Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02761 and MIT1002_02762 are separated by 325 nucleotides MIT1002_02762 and MIT1002_02763 are separated by 42 nucleotides MIT1002_02763 and MIT1002_02764 are separated by 7 nucleotides MIT1002_02764 and MIT1002_02765 are separated by 169 nucleotides MIT1002_02765 and MIT1002_02766 are separated by 42 nucleotides MIT1002_02766 and MIT1002_02767 are separated by 7 nucleotides MIT1002_02767 and MIT1002_02768 are separated by 88 nucleotides MIT1002_02768 and MIT1002_02769 are separated by 24 nucleotides
MIT1002_02761: MIT1002_02761 - Trigger factor, at 3,067,486 to 3,068,790
_02761
MIT1002_02762: MIT1002_02762 - tRNA-Pro, at 3,069,116 to 3,069,192
_02762
MIT1002_02763: MIT1002_02763 - tRNA-Leu, at 3,069,235 to 3,069,319
_02763
MIT1002_02764: MIT1002_02764 - tRNA-His, at 3,069,327 to 3,069,402
_02764
MIT1002_02765: MIT1002_02765 - tRNA-Pro, at 3,069,572 to 3,069,648
_02765
MIT1002_02766: MIT1002_02766 - tRNA-Leu, at 3,069,691 to 3,069,775
_02766
MIT1002_02767: MIT1002_02767 - tRNA-His, at 3,069,783 to 3,069,858
_02767
MIT1002_02768: MIT1002_02768 - tRNA-Arg, at 3,069,947 to 3,070,023
_02768
MIT1002_02769: MIT1002_02769 - tRNA-Pro, at 3,070,048 to 3,070,124
_02769
Position (kb)
3069
3070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3068.371 kb on - strand, within MIT1002_02761 at 3068.974 kb on + strand at 3068.982 kb on - strand at 3068.982 kb on - strand at 3069.118 kb on - strand at 3069.147 kb on - strand, within MIT1002_02762 at 3069.170 kb on + strand, within MIT1002_02762 at 3069.180 kb on + strand, within MIT1002_02762 at 3069.258 kb on - strand, within MIT1002_02763 at 3069.405 kb on + strand at 3069.408 kb on - strand at 3069.413 kb on - strand at 3069.463 kb on + strand at 3069.662 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 3,068,371 - MIT1002_02761 0.68 +1.9 3,068,974 + -0.7 3,068,982 - -3.5 3,068,982 - -0.7 3,069,118 - -0.2 3,069,147 - MIT1002_02762 0.40 -0.1 3,069,170 + MIT1002_02762 0.70 -1.1 3,069,180 + MIT1002_02762 0.83 -0.6 3,069,258 - MIT1002_02763 0.27 +1.2 3,069,405 + +0.2 3,069,408 - +0.6 3,069,413 - +1.3 3,069,463 + -0.2 3,069,662 + -0.2
Or see this region's nucleotide sequence