Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02762

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02761 and MIT1002_02762 are separated by 325 nucleotidesMIT1002_02762 and MIT1002_02763 are separated by 42 nucleotidesMIT1002_02763 and MIT1002_02764 are separated by 7 nucleotidesMIT1002_02764 and MIT1002_02765 are separated by 169 nucleotidesMIT1002_02765 and MIT1002_02766 are separated by 42 nucleotidesMIT1002_02766 and MIT1002_02767 are separated by 7 nucleotidesMIT1002_02767 and MIT1002_02768 are separated by 88 nucleotidesMIT1002_02768 and MIT1002_02769 are separated by 24 nucleotides MIT1002_02761: MIT1002_02761 - Trigger factor, at 3,067,486 to 3,068,790 _02761 MIT1002_02762: MIT1002_02762 - tRNA-Pro, at 3,069,116 to 3,069,192 _02762 MIT1002_02763: MIT1002_02763 - tRNA-Leu, at 3,069,235 to 3,069,319 _02763 MIT1002_02764: MIT1002_02764 - tRNA-His, at 3,069,327 to 3,069,402 _02764 MIT1002_02765: MIT1002_02765 - tRNA-Pro, at 3,069,572 to 3,069,648 _02765 MIT1002_02766: MIT1002_02766 - tRNA-Leu, at 3,069,691 to 3,069,775 _02766 MIT1002_02767: MIT1002_02767 - tRNA-His, at 3,069,783 to 3,069,858 _02767 MIT1002_02768: MIT1002_02768 - tRNA-Arg, at 3,069,947 to 3,070,023 _02768 MIT1002_02769: MIT1002_02769 - tRNA-Pro, at 3,070,048 to 3,070,124 _02769 Position (kb) 3069 3070Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3068.371 kb on - strand, within MIT1002_02761at 3068.974 kb on + strandat 3068.982 kb on - strandat 3068.982 kb on - strandat 3069.118 kb on - strandat 3069.147 kb on - strand, within MIT1002_02762at 3069.170 kb on + strand, within MIT1002_02762at 3069.180 kb on + strand, within MIT1002_02762at 3069.258 kb on - strand, within MIT1002_02763at 3069.405 kb on + strandat 3069.408 kb on - strandat 3069.413 kb on - strandat 3069.463 kb on + strandat 3069.662 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
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3,068,371 - MIT1002_02761 0.68 +1.9
3,068,974 + -0.7
3,068,982 - -3.5
3,068,982 - -0.7
3,069,118 - -0.2
3,069,147 - MIT1002_02762 0.40 -0.1
3,069,170 + MIT1002_02762 0.70 -1.1
3,069,180 + MIT1002_02762 0.83 -0.6
3,069,258 - MIT1002_02763 0.27 +1.2
3,069,405 + +0.2
3,069,408 - +0.6
3,069,413 - +1.3
3,069,463 + -0.2
3,069,662 + -0.2

Or see this region's nucleotide sequence