Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02038

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
2,288,238	+		MIT1002_02036	0.68	+0.2
2,288,246	+		MIT1002_02036	0.68	-0.8
2,288,246	-		MIT1002_02036	0.68	+1.7
2,288,343	+		MIT1002_02036	0.73	+1.0
2,288,345	-		MIT1002_02036	0.73	+1.0
2,288,346	-		MIT1002_02036	0.73	-0.9
2,288,383	+		MIT1002_02036	0.75	-0.7
2,288,402	+		MIT1002_02036	0.76	+0.8
2,288,421	-		MIT1002_02036	0.77	-0.2
2,288,428	-		MIT1002_02036	0.77	-0.9
2,288,472	+		MIT1002_02036	0.79	-1.1
2,288,512	+		MIT1002_02036	0.81	-0.5
2,288,512	+		MIT1002_02036	0.81	-1.2
2,288,604	+		MIT1002_02036	0.85	+0.1
2,288,621	+		MIT1002_02036	0.86	-0.3
2,288,690	+		MIT1002_02036	0.90	-0.3
2,288,696	-		MIT1002_02036	0.90	-1.4
2,288,791	+				-0.3
2,288,887	-				-1.0
2,288,895	-				-0.2
2,288,960	-		MIT1002_02037	0.24	-0.6
2,289,026	-		MIT1002_02037	0.52	+1.9
2,289,026	-		MIT1002_02037	0.52	+0.2
2,289,047	+		MIT1002_02037	0.61	-0.6
2,289,047	+		MIT1002_02037	0.61	+0.0
2,289,047	+		MIT1002_02037	0.61	+0.5
2,289,055	-		MIT1002_02037	0.64	+1.9
2,289,194	-				-0.3
2,289,196	+				-1.9
2,289,205	+				-0.9
2,289,232	+				-2.1
2,289,232	+				-0.3
2,289,232	+				+0.3
2,289,240	-				+1.3
2,289,240	-				+0.4
2,289,240	-				-0.4
2,289,356	-		MIT1002_02038	0.11	+0.1
2,289,356	-		MIT1002_02038	0.11	+0.7
2,289,389	-		MIT1002_02038	0.13	+0.1
2,289,404	-		MIT1002_02038	0.14	+0.9
2,289,410	-		MIT1002_02038	0.14	+2.7
2,289,433	-		MIT1002_02038	0.15	-0.0
2,289,441	+		MIT1002_02038	0.16	+0.6
2,289,526	-		MIT1002_02038	0.20	-1.6
2,289,577	-		MIT1002_02038	0.23	+1.4
2,289,669	+		MIT1002_02038	0.28	-0.5
2,289,770	-		MIT1002_02038	0.33	-1.4
2,289,807	+		MIT1002_02038	0.35	+0.6
2,289,807	+		MIT1002_02038	0.35	+1.6
2,289,833	-		MIT1002_02038	0.36	+1.5
2,289,901	+		MIT1002_02038	0.39	-1.1
2,289,952	+		MIT1002_02038	0.42	-2.6
2,289,993	-		MIT1002_02038	0.44	-0.2
2,290,035	+		MIT1002_02038	0.46	+1.4
2,290,035	+		MIT1002_02038	0.46	-0.1
2,290,035	+		MIT1002_02038	0.46	+1.3
2,290,043	-		MIT1002_02038	0.47	-0.7
2,290,043	-		MIT1002_02038	0.47	-0.2
2,290,043	-		MIT1002_02038	0.47	+0.2
2,290,104	+		MIT1002_02038	0.50	+1.7
2,290,110	+		MIT1002_02038	0.50	-2.1
2,290,144	+		MIT1002_02038	0.52	-0.2
2,290,152	-		MIT1002_02038	0.52	+1.8
2,290,152	-		MIT1002_02038	0.52	-3.5
2,290,188	+		MIT1002_02038	0.54	-0.8
2,290,197	-		MIT1002_02038	0.55	+1.3
2,290,197	-		MIT1002_02038	0.55	-0.1
2,290,197	-		MIT1002_02038	0.55	-0.3
2,290,230	-		MIT1002_02038	0.56	-2.1
2,290,258	+		MIT1002_02038	0.58	+0.1
2,290,284	-		MIT1002_02038	0.59	+0.6
2,290,304	-		MIT1002_02038	0.60	-1.0
2,290,342	+		MIT1002_02038	0.62	-0.6
2,290,441	-		MIT1002_02038	0.67	+0.3
2,290,445	+		MIT1002_02038	0.67	+0.2
2,290,534	-		MIT1002_02038	0.72	+0.9
2,290,534	-		MIT1002_02038	0.72	-1.2
2,290,568	+		MIT1002_02038	0.74	-0.3
2,290,583	-		MIT1002_02038	0.75	+0.7
2,290,667	+		MIT1002_02038	0.79	-1.9
2,290,697	+		MIT1002_02038	0.80	-0.3
2,290,797	+		MIT1002_02038	0.86	-0.4
2,290,869	+		MIT1002_02038	0.89	+0.3
2,290,877	-		MIT1002_02038	0.90	+0.4
2,290,889	+				+0.8
2,290,910	+				+2.6
2,290,918	-				-1.9
2,290,918	-				+1.7
2,291,175	-				+0.1
2,291,244	+				-0.2
2,291,280	-		MIT1002_02039	0.11	-1.0
2,291,280	-		MIT1002_02039	0.11	+0.2
2,291,378	-		MIT1002_02039	0.16	-0.6
2,291,400	-		MIT1002_02039	0.18	+0.3
2,291,473	-		MIT1002_02039	0.22	-0.8
2,291,486	-		MIT1002_02039	0.23	+1.0
2,291,550	+		MIT1002_02039	0.26	+0.3
2,291,650	+		MIT1002_02039	0.32	-0.5
2,291,651	-		MIT1002_02039	0.32	-0.6
2,291,651	-		MIT1002_02039	0.32	-0.3
2,291,661	-		MIT1002_02039	0.33	+0.4
2,291,666	-		MIT1002_02039	0.33	-1.4
2,291,682	+		MIT1002_02039	0.34	+0.9
2,291,685	-		MIT1002_02039	0.34	+2.0
2,291,695	-		MIT1002_02039	0.35	-0.7
2,291,706	+		MIT1002_02039	0.35	-0.7
2,291,706	+		MIT1002_02039	0.35	-0.3
2,291,716	+		MIT1002_02039	0.36	-2.6
2,291,716	+		MIT1002_02039	0.36	-2.3
2,291,724	-		MIT1002_02039	0.36	-1.5
2,291,811	+		MIT1002_02039	0.41	+0.1
2,291,811	+		MIT1002_02039	0.41	+1.4
2,291,811	+		MIT1002_02039	0.41	+0.2
2,291,819	+		MIT1002_02039	0.42	+0.5
2,291,834	+		MIT1002_02039	0.42	+0.4
2,291,842	-		MIT1002_02039	0.43	+0.3
2,291,848	+		MIT1002_02039	0.43	-2.6
2,291,976	+		MIT1002_02039	0.51	+0.3
2,292,008	+		MIT1002_02039	0.52	+0.1