Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01936

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
2,148,602	-		MIT1002_01934	0.24	-0.9
2,148,668	+		MIT1002_01934	0.38	-0.5
2,148,675	-		MIT1002_01934	0.39	-0.0
2,148,708	+		MIT1002_01934	0.46	+0.5
2,148,759	+		MIT1002_01934	0.57	-1.4
2,148,785	+		MIT1002_01934	0.63	+0.4
2,148,832	+		MIT1002_01934	0.73	-0.2
2,148,892	-		MIT1002_01934	0.85	+1.2
2,148,892	-		MIT1002_01934	0.85	-0.9
2,148,892	-		MIT1002_01934	0.85	-1.6
2,148,939	-				-0.0
2,148,954	-				+0.4
2,148,955	-				+0.5
2,149,008	+				-0.7
2,149,016	-				-1.9
2,149,016	-				-0.8
2,149,019	+				-2.7
2,149,048	+				-1.2
2,149,082	+				+0.2
2,149,083	+				+0.2
2,149,150	+		MIT1002_01935	0.24	+1.8
2,149,199	-		MIT1002_01935	0.36	+0.7
2,149,287	-		MIT1002_01935	0.57	-1.3
2,149,287	-		MIT1002_01935	0.57	-1.0
2,149,345	+		MIT1002_01935	0.71	+0.1
2,149,366	-		MIT1002_01935	0.76	-0.2
2,149,411	-		MIT1002_01935	0.87	-0.4
2,149,487	-				-1.2
2,149,574	+				+0.6
2,149,631	-				-0.5
2,149,653	-				+0.9
2,149,670	-		MIT1002_01936	0.12	-2.7
2,149,680	-		MIT1002_01936	0.13	-0.6
2,149,680	-		MIT1002_01936	0.13	-0.7
2,149,680	-		MIT1002_01936	0.13	-3.5
2,149,728	+		MIT1002_01936	0.20	-0.9
2,149,728	+		MIT1002_01936	0.20	+0.6
2,149,731	-		MIT1002_01936	0.20	+0.0
2,149,811	+		MIT1002_01936	0.30	-1.3
2,149,831	-		MIT1002_01936	0.33	-3.5
2,149,833	-		MIT1002_01936	0.33	-0.9
2,149,838	-		MIT1002_01936	0.34	+0.1
2,149,864	-		MIT1002_01936	0.37	-0.8
2,149,917	+		MIT1002_01936	0.44	-2.1
2,149,990	+		MIT1002_01936	0.53	+0.4
2,150,000	-		MIT1002_01936	0.55	+0.2
2,150,027	+		MIT1002_01936	0.58	+0.5
2,150,060	-		MIT1002_01936	0.62	-1.3
2,150,116	-		MIT1002_01936	0.69	-1.0
2,150,204	-		MIT1002_01936	0.81	+0.1
2,150,204	-		MIT1002_01936	0.81	-0.8
2,150,229	-		MIT1002_01936	0.84	+0.3
2,150,279	-				-0.8
2,150,304	-				-0.0
2,150,360	-				-0.1
2,150,416	+				-0.5
2,150,422	-				-3.2
2,150,424	-				+0.2
2,150,424	-				-3.5
2,150,436	+				-0.3
2,150,456	+				+0.3
2,150,514	+				+1.9
2,150,576	+				-0.2
2,150,784	+		MIT1002_01937	0.22	-0.6
2,150,810	+		MIT1002_01937	0.25	-1.3
2,150,929	-		MIT1002_01937	0.37	+1.2
2,150,956	+		MIT1002_01937	0.40	+1.3
2,150,956	-		MIT1002_01937	0.40	+1.7
2,150,956	-		MIT1002_01937	0.40	-1.2
2,151,133	+		MIT1002_01937	0.58	+0.3
2,151,141	-		MIT1002_01937	0.59	+0.6
2,151,141	-		MIT1002_01937	0.59	+1.6
2,151,185	+		MIT1002_01937	0.63	+0.0
2,151,198	-		MIT1002_01937	0.65	-1.0
2,151,210	-		MIT1002_01937	0.66	-0.4
2,151,242	-		MIT1002_01937	0.69	-1.4
2,151,289	+		MIT1002_01937	0.74	+0.3
2,151,305	+		MIT1002_01937	0.76	+0.4
2,151,351	+		MIT1002_01937	0.81	-0.8