Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00812 and MIT1002_00813 are separated by 12 nucleotides MIT1002_00813 and MIT1002_00814 are separated by 437 nucleotides MIT1002_00814 and MIT1002_00815 are separated by 1 nucleotides
MIT1002_00812: MIT1002_00812 - 50S ribosomal protein L13, at 898,194 to 898,622
_00812
MIT1002_00813: MIT1002_00813 - 30S ribosomal protein S9, at 898,635 to 899,027
_00813
MIT1002_00814: MIT1002_00814 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 899,465 to 900,097
_00814
MIT1002_00815: MIT1002_00815 - Cytochrome b/c1, at 900,099 to 901,364
_00815
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 899.115 kb on - strand at 899.134 kb on - strand at 899.153 kb on + strand at 899.153 kb on + strand at 899.207 kb on + strand at 899.232 kb on - strand at 899.344 kb on - strand at 899.388 kb on - strand at 899.403 kb on - strand at 899.415 kb on + strand at 899.425 kb on + strand at 899.484 kb on + strand at 899.539 kb on + strand, within MIT1002_00814 at 899.662 kb on - strand, within MIT1002_00814 at 899.684 kb on - strand, within MIT1002_00814 at 899.715 kb on - strand, within MIT1002_00814 at 899.773 kb on - strand, within MIT1002_00814 at 899.791 kb on + strand, within MIT1002_00814 at 899.872 kb on - strand, within MIT1002_00814 at 899.879 kb on + strand, within MIT1002_00814 at 899.887 kb on - strand, within MIT1002_00814 at 899.889 kb on + strand, within MIT1002_00814 at 899.892 kb on + strand, within MIT1002_00814 at 899.986 kb on + strand, within MIT1002_00814 at 900.075 kb on + strand at 900.083 kb on - strand at 900.134 kb on - strand at 900.139 kb on - strand at 900.523 kb on - strand, within MIT1002_00815 at 900.932 kb on - strand, within MIT1002_00815
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 899,115 - -1.8 899,134 - +2.4 899,153 + +0.3 899,153 + +1.1 899,207 + +0.7 899,232 - +1.1 899,344 - -2.1 899,388 - +0.2 899,403 - -0.2 899,415 + -1.1 899,425 + -2.8 899,484 + -1.8 899,539 + MIT1002_00814 0.12 -0.8 899,662 - MIT1002_00814 0.31 -0.7 899,684 - MIT1002_00814 0.35 -0.5 899,715 - MIT1002_00814 0.39 -2.3 899,773 - MIT1002_00814 0.49 +0.2 899,791 + MIT1002_00814 0.52 -2.0 899,872 - MIT1002_00814 0.64 -1.6 899,879 + MIT1002_00814 0.65 +1.4 899,887 - MIT1002_00814 0.67 -1.1 899,889 + MIT1002_00814 0.67 -1.1 899,892 + MIT1002_00814 0.67 -2.1 899,986 + MIT1002_00814 0.82 -0.6 900,075 + +2.0 900,083 - -0.1 900,134 - -1.8 900,139 - -0.5 900,523 - MIT1002_00815 0.33 -1.9 900,932 - MIT1002_00815 0.66 -3.1
Or see this region's nucleotide sequence