Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00807

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00805 and MIT1002_00806 are separated by 90 nucleotidesMIT1002_00806 and MIT1002_00807 overlap by 4 nucleotidesMIT1002_00807 and MIT1002_00808 overlap by 11 nucleotidesMIT1002_00808 and MIT1002_00809 overlap by 17 nucleotides MIT1002_00805: MIT1002_00805 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 892,362 to 893,099 _00805 MIT1002_00806: MIT1002_00806 - hypothetical protein, at 893,190 to 893,891 _00806 MIT1002_00807: MIT1002_00807 - hypothetical protein, at 893,888 to 894,652 _00807 MIT1002_00808: MIT1002_00808 - hypothetical protein, at 894,642 to 895,007 _00808 MIT1002_00809: MIT1002_00809 - Sensor protein QseC, at 894,991 to 896,280 _00809 Position (kb) 893 894 895Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 892.907 kb on + strand, within MIT1002_00805at 892.966 kb on + strand, within MIT1002_00805at 893.038 kb on + strandat 893.054 kb on - strandat 893.133 kb on - strandat 893.166 kb on - strandat 893.211 kb on + strandat 893.307 kb on + strand, within MIT1002_00806at 893.318 kb on + strand, within MIT1002_00806at 893.352 kb on - strand, within MIT1002_00806at 893.431 kb on + strand, within MIT1002_00806at 893.604 kb on + strand, within MIT1002_00806at 893.607 kb on - strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.792 kb on - strand, within MIT1002_00806at 893.792 kb on - strand, within MIT1002_00806at 893.980 kb on + strand, within MIT1002_00807at 894.071 kb on + strand, within MIT1002_00807at 894.093 kb on - strand, within MIT1002_00807at 894.137 kb on + strand, within MIT1002_00807at 894.234 kb on + strand, within MIT1002_00807at 894.239 kb on + strand, within MIT1002_00807at 894.242 kb on - strand, within MIT1002_00807at 894.242 kb on - strand, within MIT1002_00807at 894.327 kb on + strand, within MIT1002_00807at 894.340 kb on - strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.366 kb on - strand, within MIT1002_00807at 894.366 kb on - strand, within MIT1002_00807at 894.372 kb on - strand, within MIT1002_00807at 894.377 kb on - strand, within MIT1002_00807at 894.413 kb on + strand, within MIT1002_00807at 894.447 kb on + strand, within MIT1002_00807at 894.472 kb on + strand, within MIT1002_00807at 894.498 kb on + strand, within MIT1002_00807at 894.509 kb on + strand, within MIT1002_00807at 894.509 kb on + strand, within MIT1002_00807at 894.606 kb on - strandat 894.711 kb on - strand, within MIT1002_00808at 894.748 kb on + strand, within MIT1002_00808at 894.818 kb on - strand, within MIT1002_00808at 894.934 kb on - strand, within MIT1002_00808at 894.966 kb on - strand, within MIT1002_00808at 895.058 kb on - strandat 895.062 kb on + strandat 895.070 kb on - strandat 895.075 kb on - strandat 895.094 kb on + strandat 895.099 kb on + strandat 895.104 kb on + strandat 895.176 kb on + strand, within MIT1002_00809at 895.176 kb on + strand, within MIT1002_00809at 895.179 kb on - strand, within MIT1002_00809at 895.184 kb on - strand, within MIT1002_00809at 895.184 kb on - strand, within MIT1002_00809at 895.297 kb on + strand, within MIT1002_00809at 895.297 kb on + strand, within MIT1002_00809at 895.305 kb on - strand, within MIT1002_00809at 895.309 kb on + strand, within MIT1002_00809at 895.312 kb on + strand, within MIT1002_00809at 895.323 kb on + strand, within MIT1002_00809at 895.403 kb on + strand, within MIT1002_00809at 895.461 kb on + strand, within MIT1002_00809at 895.469 kb on - strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.534 kb on - strand, within MIT1002_00809at 895.610 kb on + strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
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892,907 + MIT1002_00805 0.74 -0.0
892,966 + MIT1002_00805 0.82 +0.0
893,038 + -0.0
893,054 - +1.3
893,133 - +0.0
893,166 - -0.5
893,211 + -1.0
893,307 + MIT1002_00806 0.17 +2.3
893,318 + MIT1002_00806 0.18 -0.5
893,352 - MIT1002_00806 0.23 -3.0
893,431 + MIT1002_00806 0.34 +0.1
893,604 + MIT1002_00806 0.59 +0.6
893,607 - MIT1002_00806 0.59 +0.9
893,784 + MIT1002_00806 0.85 +0.1
893,784 + MIT1002_00806 0.85 -0.7
893,784 + MIT1002_00806 0.85 -1.3
893,784 + MIT1002_00806 0.85 -1.1
893,784 + MIT1002_00806 0.85 +0.8
893,792 - MIT1002_00806 0.86 -1.3
893,792 - MIT1002_00806 0.86 +2.3
893,980 + MIT1002_00807 0.12 -0.5
894,071 + MIT1002_00807 0.24 -0.2
894,093 - MIT1002_00807 0.27 +0.2
894,137 + MIT1002_00807 0.33 +1.8
894,234 + MIT1002_00807 0.45 -0.0
894,239 + MIT1002_00807 0.46 +1.1
894,242 - MIT1002_00807 0.46 -0.6
894,242 - MIT1002_00807 0.46 +1.0
894,327 + MIT1002_00807 0.57 +1.0
894,340 - MIT1002_00807 0.59 -0.6
894,358 + MIT1002_00807 0.61 -0.2
894,358 + MIT1002_00807 0.61 -1.3
894,358 + MIT1002_00807 0.61 -1.3
894,364 + MIT1002_00807 0.62 -0.1
894,364 + MIT1002_00807 0.62 -0.3
894,364 + MIT1002_00807 0.62 -3.0
894,364 + MIT1002_00807 0.62 -0.9
894,364 + MIT1002_00807 0.62 +0.6
894,366 - MIT1002_00807 0.62 -0.4
894,366 - MIT1002_00807 0.62 -0.8
894,372 - MIT1002_00807 0.63 -0.7
894,377 - MIT1002_00807 0.64 -0.2
894,413 + MIT1002_00807 0.69 -0.3
894,447 + MIT1002_00807 0.73 -0.9
894,472 + MIT1002_00807 0.76 -0.6
894,498 + MIT1002_00807 0.80 -1.3
894,509 + MIT1002_00807 0.81 -0.1
894,509 + MIT1002_00807 0.81 -1.9
894,606 - +0.7
894,711 - MIT1002_00808 0.19 -0.3
894,748 + MIT1002_00808 0.29 -2.1
894,818 - MIT1002_00808 0.48 -0.5
894,934 - MIT1002_00808 0.80 +2.8
894,966 - MIT1002_00808 0.89 +0.0
895,058 - -3.3
895,062 + +0.5
895,070 - +0.1
895,075 - -2.6
895,094 + +0.1
895,099 + -0.3
895,104 + -0.6
895,176 + MIT1002_00809 0.14 -1.0
895,176 + MIT1002_00809 0.14 +0.6
895,179 - MIT1002_00809 0.15 +1.0
895,184 - MIT1002_00809 0.15 -2.0
895,184 - MIT1002_00809 0.15 -0.3
895,297 + MIT1002_00809 0.24 -0.2
895,297 + MIT1002_00809 0.24 -0.7
895,305 - MIT1002_00809 0.24 -2.1
895,309 + MIT1002_00809 0.25 -0.6
895,312 + MIT1002_00809 0.25 +1.1
895,323 + MIT1002_00809 0.26 -3.5
895,403 + MIT1002_00809 0.32 -1.1
895,461 + MIT1002_00809 0.36 +0.2
895,469 - MIT1002_00809 0.37 +0.2
895,526 + MIT1002_00809 0.41 -0.5
895,526 + MIT1002_00809 0.41 -0.2
895,526 + MIT1002_00809 0.41 -0.5
895,526 + MIT1002_00809 0.41 -0.6
895,534 - MIT1002_00809 0.42 +0.9
895,610 + MIT1002_00809 0.48 +0.5
895,618 - MIT1002_00809 0.49 -0.3
895,618 - MIT1002_00809 0.49 -0.3
895,618 - MIT1002_00809 0.49 -0.1
895,618 - MIT1002_00809 0.49 +0.5
895,618 - MIT1002_00809 0.49 -0.4

Or see this region's nucleotide sequence