Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00594

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00593 and MIT1002_00594 are separated by 26 nucleotidesMIT1002_00594 and MIT1002_00595 are separated by 425 nucleotides MIT1002_00593: MIT1002_00593 - Type I restriction enzyme EcoR124II R protein, at 640,593 to 643,706 _00593 MIT1002_00594: MIT1002_00594 - hypothetical protein, at 643,733 to 644,767 _00594 MIT1002_00595: MIT1002_00595 - hypothetical protein, at 645,193 to 645,717 _00595 Position (kb) 643 644 645Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 642.784 kb on + strand, within MIT1002_00593at 642.805 kb on + strand, within MIT1002_00593at 642.891 kb on - strand, within MIT1002_00593at 642.932 kb on + strand, within MIT1002_00593at 643.006 kb on + strand, within MIT1002_00593at 643.014 kb on - strand, within MIT1002_00593at 643.065 kb on - strand, within MIT1002_00593at 643.189 kb on - strand, within MIT1002_00593at 643.203 kb on + strand, within MIT1002_00593at 643.320 kb on + strand, within MIT1002_00593at 643.545 kb on + strandat 643.679 kb on + strandat 643.679 kb on + strandat 643.686 kb on + strandat 643.687 kb on - strandat 643.687 kb on - strandat 643.694 kb on - strandat 643.700 kb on + strandat 643.700 kb on + strandat 643.700 kb on + strandat 643.731 kb on - strandat 643.756 kb on + strandat 643.823 kb on - strandat 643.872 kb on + strand, within MIT1002_00594at 643.914 kb on + strand, within MIT1002_00594at 643.959 kb on + strand, within MIT1002_00594at 643.967 kb on - strand, within MIT1002_00594at 644.001 kb on - strand, within MIT1002_00594at 644.071 kb on + strand, within MIT1002_00594at 644.129 kb on + strand, within MIT1002_00594at 644.129 kb on + strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.403 kb on + strand, within MIT1002_00594at 644.403 kb on + strand, within MIT1002_00594at 644.416 kb on + strand, within MIT1002_00594at 644.438 kb on - strand, within MIT1002_00594at 644.466 kb on + strand, within MIT1002_00594at 644.474 kb on - strand, within MIT1002_00594at 644.752 kb on + strandat 644.752 kb on + strandat 644.752 kb on + strandat 644.760 kb on - strandat 644.833 kb on + strandat 644.933 kb on - strandat 644.986 kb on - strandat 644.986 kb on - strandat 644.993 kb on - strandat 645.050 kb on + strandat 645.058 kb on - strandat 645.058 kb on - strandat 645.196 kb on - strandat 645.234 kb on + strandat 645.273 kb on + strand, within MIT1002_00595at 645.273 kb on + strand, within MIT1002_00595at 645.291 kb on + strand, within MIT1002_00595at 645.299 kb on + strand, within MIT1002_00595at 645.300 kb on - strand, within MIT1002_00595at 645.307 kb on - strand, within MIT1002_00595at 645.385 kb on + strand, within MIT1002_00595at 645.388 kb on - strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.403 kb on - strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.413 kb on - strand, within MIT1002_00595at 645.430 kb on - strand, within MIT1002_00595at 645.493 kb on + strand, within MIT1002_00595at 645.501 kb on - strand, within MIT1002_00595at 645.589 kb on + strand, within MIT1002_00595at 645.605 kb on + strand, within MIT1002_00595at 645.640 kb on + strand, within MIT1002_00595at 645.648 kb on - strand, within MIT1002_00595at 645.699 kb on + strandat 645.706 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.719 kb on - strandat 645.719 kb on - strandat 645.746 kb on + strandat 645.754 kb on - strandat 645.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
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642,784 + MIT1002_00593 0.70 +2.0
642,805 + MIT1002_00593 0.71 +0.6
642,891 - MIT1002_00593 0.74 +1.3
642,932 + MIT1002_00593 0.75 -1.5
643,006 + MIT1002_00593 0.77 -2.3
643,014 - MIT1002_00593 0.78 -1.7
643,065 - MIT1002_00593 0.79 -2.5
643,189 - MIT1002_00593 0.83 +0.3
643,203 + MIT1002_00593 0.84 +0.4
643,320 + MIT1002_00593 0.88 +0.2
643,545 + +1.0
643,679 + -0.3
643,679 + -0.1
643,686 + +0.3
643,687 - -0.7
643,687 - -0.2
643,694 - -0.2
643,700 + +1.4
643,700 + +0.6
643,700 + +2.9
643,731 - +0.9
643,756 + -0.7
643,823 - +0.2
643,872 + MIT1002_00594 0.13 +2.3
643,914 + MIT1002_00594 0.17 +0.4
643,959 + MIT1002_00594 0.22 -0.7
643,967 - MIT1002_00594 0.23 +0.3
644,001 - MIT1002_00594 0.26 +0.2
644,071 + MIT1002_00594 0.33 -1.7
644,129 + MIT1002_00594 0.38 -0.1
644,129 + MIT1002_00594 0.38 -1.5
644,137 - MIT1002_00594 0.39 -0.1
644,137 - MIT1002_00594 0.39 +0.2
644,137 - MIT1002_00594 0.39 -0.3
644,137 - MIT1002_00594 0.39 -0.3
644,403 + MIT1002_00594 0.65 -2.4
644,403 + MIT1002_00594 0.65 -1.2
644,416 + MIT1002_00594 0.66 +0.3
644,438 - MIT1002_00594 0.68 +1.7
644,466 + MIT1002_00594 0.71 +0.1
644,474 - MIT1002_00594 0.72 -0.1
644,752 + +0.8
644,752 + +0.4
644,752 + -0.3
644,760 - +2.3
644,833 + +1.0
644,933 - -0.7
644,986 - -0.6
644,986 - +2.4
644,993 - +0.1
645,050 + +2.7
645,058 - -0.2
645,058 - -3.2
645,196 - -1.4
645,234 + +1.2
645,273 + MIT1002_00595 0.15 +0.6
645,273 + MIT1002_00595 0.15 -0.5
645,291 + MIT1002_00595 0.19 +0.4
645,299 + MIT1002_00595 0.20 -0.3
645,300 - MIT1002_00595 0.20 -0.5
645,307 - MIT1002_00595 0.22 +1.3
645,385 + MIT1002_00595 0.37 +0.7
645,388 - MIT1002_00595 0.37 -1.0
645,390 + MIT1002_00595 0.38 +2.1
645,390 + MIT1002_00595 0.38 +0.7
645,390 + MIT1002_00595 0.38 +0.3
645,398 - MIT1002_00595 0.39 -0.3
645,398 - MIT1002_00595 0.39 +0.1
645,403 - MIT1002_00595 0.40 +0.1
645,405 + MIT1002_00595 0.40 +1.9
645,405 + MIT1002_00595 0.40 -1.3
645,413 - MIT1002_00595 0.42 -0.6
645,430 - MIT1002_00595 0.45 -0.9
645,493 + MIT1002_00595 0.57 +0.5
645,501 - MIT1002_00595 0.59 +1.0
645,589 + MIT1002_00595 0.75 -2.0
645,605 + MIT1002_00595 0.78 -0.6
645,640 + MIT1002_00595 0.85 +2.1
645,648 - MIT1002_00595 0.87 -0.4
645,699 + -1.0
645,706 + +0.5
645,711 + -0.1
645,711 + +0.2
645,711 + +0.2
645,719 - -0.3
645,719 - -0.2
645,746 + -0.0
645,754 - +0.3
645,754 - -0.1

Or see this region's nucleotide sequence