Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00535 and MIT1002_00536 are separated by 52 nucleotides MIT1002_00536 and MIT1002_00537 are separated by 77 nucleotides MIT1002_00537 and MIT1002_00538 are separated by 100 nucleotides
MIT1002_00535: MIT1002_00535 - putative dioxygenase of extradiol dioxygenase family protein, at 582,573 to 582,989
_00535
MIT1002_00536: MIT1002_00536 - putative iron-regulated membrane protein, at 583,042 to 583,761
_00536
MIT1002_00537: MIT1002_00537 - NYN domain protein, at 583,839 to 584,309
_00537
MIT1002_00538: MIT1002_00538 - Gamma-glutamyltranspeptidase precursor, at 584,410 to 586,128
_00538
Position (kb) 583
584
585 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 582.975 kb on - strand at 582.999 kb on + strand at 582.999 kb on - strand at 583.027 kb on - strand at 583.029 kb on + strand at 583.037 kb on - strand at 583.040 kb on + strand at 583.091 kb on + strand at 583.100 kb on - strand at 583.142 kb on + strand, within MIT1002_00536 at 583.241 kb on + strand, within MIT1002_00536 at 583.261 kb on - strand, within MIT1002_00536 at 583.320 kb on - strand, within MIT1002_00536 at 583.320 kb on - strand, within MIT1002_00536 at 583.322 kb on + strand, within MIT1002_00536 at 583.383 kb on - strand, within MIT1002_00536 at 583.401 kb on - strand, within MIT1002_00536 at 583.410 kb on + strand, within MIT1002_00536 at 583.502 kb on + strand, within MIT1002_00536 at 583.522 kb on - strand, within MIT1002_00536 at 583.570 kb on - strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.603 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.629 kb on + strand, within MIT1002_00536 at 583.683 kb on - strand, within MIT1002_00536 at 583.693 kb on - strand at 583.693 kb on - strand at 583.701 kb on - strand at 583.716 kb on + strand at 583.724 kb on - strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.856 kb on - strand at 583.885 kb on - strand at 583.885 kb on - strand at 583.896 kb on - strand, within MIT1002_00537 at 583.985 kb on - strand, within MIT1002_00537 at 584.055 kb on - strand, within MIT1002_00537 at 584.056 kb on - strand, within MIT1002_00537 at 584.070 kb on + strand, within MIT1002_00537 at 584.110 kb on - strand, within MIT1002_00537 at 584.119 kb on + strand, within MIT1002_00537 at 584.126 kb on - strand, within MIT1002_00537 at 584.137 kb on + strand, within MIT1002_00537 at 584.184 kb on + strand, within MIT1002_00537 at 584.222 kb on + strand, within MIT1002_00537 at 584.231 kb on - strand, within MIT1002_00537 at 584.335 kb on - strand at 584.388 kb on + strand at 584.401 kb on - strand at 584.401 kb on - strand at 584.401 kb on - strand at 584.407 kb on + strand at 584.428 kb on + strand at 584.436 kb on - strand at 584.530 kb on - strand at 584.530 kb on - strand at 584.535 kb on - strand at 584.542 kb on - strand at 584.567 kb on - strand at 584.621 kb on + strand, within MIT1002_00538 at 584.623 kb on + strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.662 kb on + strand, within MIT1002_00538 at 584.751 kb on + strand, within MIT1002_00538 at 584.751 kb on + strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.787 kb on + strand, within MIT1002_00538 at 584.795 kb on - strand, within MIT1002_00538 at 584.814 kb on - strand, within MIT1002_00538 at 584.817 kb on + strand, within MIT1002_00538 at 584.890 kb on + strand, within MIT1002_00538 at 584.890 kb on + strand, within MIT1002_00538 at 584.898 kb on - strand, within MIT1002_00538 at 584.911 kb on - strand, within MIT1002_00538 at 584.921 kb on - strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.954 kb on + strand, within MIT1002_00538 at 584.959 kb on + strand, within MIT1002_00538 at 584.976 kb on + strand, within MIT1002_00538 at 585.062 kb on + strand, within MIT1002_00538 at 585.119 kb on + strand, within MIT1002_00538 at 585.121 kb on + strand, within MIT1002_00538 at 585.129 kb on - strand, within MIT1002_00538 at 585.143 kb on + strand, within MIT1002_00538 at 585.185 kb on + strand, within MIT1002_00538 at 585.208 kb on - strand, within MIT1002_00538 at 585.252 kb on + strand, within MIT1002_00538 at 585.266 kb on - strand, within MIT1002_00538 at 585.276 kb on - strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 582,975 - +0.6 582,999 + +1.4 582,999 - +0.9 583,027 - +1.7 583,029 + -2.5 583,037 - +0.4 583,040 + -0.2 583,091 + +0.2 583,100 - +1.7 583,142 + MIT1002_00536 0.14 -0.2 583,241 + MIT1002_00536 0.28 -1.2 583,261 - MIT1002_00536 0.30 -0.0 583,320 - MIT1002_00536 0.39 +1.6 583,320 - MIT1002_00536 0.39 +0.3 583,322 + MIT1002_00536 0.39 -0.6 583,383 - MIT1002_00536 0.47 +0.3 583,401 - MIT1002_00536 0.50 +0.1 583,410 + MIT1002_00536 0.51 +0.5 583,502 + MIT1002_00536 0.64 +1.0 583,522 - MIT1002_00536 0.67 +0.3 583,570 - MIT1002_00536 0.73 +1.2 583,596 + MIT1002_00536 0.77 +0.1 583,596 + MIT1002_00536 0.77 -1.0 583,596 + MIT1002_00536 0.77 -0.1 583,596 + MIT1002_00536 0.77 +0.9 583,596 + MIT1002_00536 0.77 -1.2 583,603 - MIT1002_00536 0.78 -2.1 583,604 - MIT1002_00536 0.78 -0.2 583,604 - MIT1002_00536 0.78 +1.7 583,604 - MIT1002_00536 0.78 +0.6 583,629 + MIT1002_00536 0.82 -0.0 583,683 - MIT1002_00536 0.89 -7.5 583,693 - -0.2 583,693 - +0.2 583,701 - -0.0 583,716 + +0.3 583,724 - +0.5 583,732 + +0.3 583,732 + -0.9 583,732 + +2.7 583,732 + +0.2 583,856 - +0.7 583,885 - +0.2 583,885 - +1.1 583,896 - MIT1002_00537 0.12 -0.0 583,985 - MIT1002_00537 0.31 +0.8 584,055 - MIT1002_00537 0.46 +0.2 584,056 - MIT1002_00537 0.46 +0.3 584,070 + MIT1002_00537 0.49 +0.2 584,110 - MIT1002_00537 0.58 +1.1 584,119 + MIT1002_00537 0.59 +1.4 584,126 - MIT1002_00537 0.61 -1.6 584,137 + MIT1002_00537 0.63 -0.7 584,184 + MIT1002_00537 0.73 +0.4 584,222 + MIT1002_00537 0.81 +1.0 584,231 - MIT1002_00537 0.83 -2.1 584,335 - +1.6 584,388 + +0.1 584,401 - +0.4 584,401 - -1.0 584,401 - +1.0 584,407 + +1.1 584,428 + -1.7 584,436 - +0.3 584,530 - +0.5 584,530 - -1.0 584,535 - +0.8 584,542 - -0.6 584,567 - +0.2 584,621 + MIT1002_00538 0.12 -3.4 584,623 + MIT1002_00538 0.12 -0.7 584,631 - MIT1002_00538 0.13 +0.2 584,631 - MIT1002_00538 0.13 +0.5 584,631 - MIT1002_00538 0.13 +0.8 584,662 + MIT1002_00538 0.15 -1.2 584,751 + MIT1002_00538 0.20 +0.1 584,751 + MIT1002_00538 0.20 -1.4 584,759 - MIT1002_00538 0.20 -2.9 584,759 - MIT1002_00538 0.20 +0.8 584,759 - MIT1002_00538 0.20 -2.2 584,759 - MIT1002_00538 0.20 -0.4 584,787 + MIT1002_00538 0.22 +1.3 584,795 - MIT1002_00538 0.22 +0.9 584,814 - MIT1002_00538 0.24 -0.4 584,817 + MIT1002_00538 0.24 -0.8 584,890 + MIT1002_00538 0.28 +1.1 584,890 + MIT1002_00538 0.28 -0.3 584,898 - MIT1002_00538 0.28 -0.4 584,911 - MIT1002_00538 0.29 +0.3 584,921 - MIT1002_00538 0.30 +1.3 584,945 + MIT1002_00538 0.31 +0.5 584,945 + MIT1002_00538 0.31 +0.4 584,945 + MIT1002_00538 0.31 -0.8 584,945 + MIT1002_00538 0.31 +0.9 584,954 + MIT1002_00538 0.32 +1.3 584,959 + MIT1002_00538 0.32 -1.3 584,976 + MIT1002_00538 0.33 -0.2 585,062 + MIT1002_00538 0.38 +1.4 585,119 + MIT1002_00538 0.41 -0.2 585,121 + MIT1002_00538 0.41 -0.0 585,129 - MIT1002_00538 0.42 -0.0 585,143 + MIT1002_00538 0.43 -0.8 585,185 + MIT1002_00538 0.45 +0.6 585,208 - MIT1002_00538 0.46 -0.4 585,252 + MIT1002_00538 0.49 -0.0 585,266 - MIT1002_00538 0.50 +1.9 585,276 - MIT1002_00538 0.50 +0.2 585,291 + MIT1002_00538 0.51 -1.5 585,291 + MIT1002_00538 0.51 +0.7 585,291 + MIT1002_00538 0.51 +0.3 585,299 - MIT1002_00538 0.52 +0.6 585,299 - MIT1002_00538 0.52 +0.4 585,299 - MIT1002_00538 0.52 -0.5
Or see this region's nucleotide sequence