Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00491

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00490 and MIT1002_00491 are separated by 156 nucleotidesMIT1002_00491 and MIT1002_00492 are separated by 121 nucleotidesMIT1002_00492 and MIT1002_00493 are separated by 32 nucleotides MIT1002_00490: MIT1002_00490 - Divergent polysaccharide deacetylase, at 534,310 to 535,215 _00490 MIT1002_00491: MIT1002_00491 - MerC mercury resistance protein, at 535,372 to 535,800 _00491 MIT1002_00492: MIT1002_00492 - Glycerophosphoryl diester phosphodiesterase, at 535,922 to 536,614 _00492 MIT1002_00493: MIT1002_00493 - threonine and homoserine efflux system, at 536,647 to 537,522 _00493 Position (kb) 535 536Strain fitness (log2 ratio) -2 -1 0 1 2at 534.543 kb on + strand, within MIT1002_00490at 534.548 kb on + strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.584 kb on + strand, within MIT1002_00490at 534.589 kb on + strand, within MIT1002_00490at 534.592 kb on - strand, within MIT1002_00490at 534.614 kb on - strand, within MIT1002_00490at 534.648 kb on - strand, within MIT1002_00490at 534.648 kb on - strand, within MIT1002_00490at 534.670 kb on - strand, within MIT1002_00490at 534.773 kb on + strand, within MIT1002_00490at 534.791 kb on - strand, within MIT1002_00490at 534.809 kb on + strand, within MIT1002_00490at 534.816 kb on - strand, within MIT1002_00490at 534.822 kb on - strand, within MIT1002_00490at 534.899 kb on - strand, within MIT1002_00490at 534.973 kb on + strand, within MIT1002_00490at 534.998 kb on + strand, within MIT1002_00490at 534.998 kb on + strand, within MIT1002_00490at 535.006 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.012 kb on - strand, within MIT1002_00490at 535.089 kb on + strand, within MIT1002_00490at 535.102 kb on + strand, within MIT1002_00490at 535.112 kb on + strand, within MIT1002_00490at 535.120 kb on - strand, within MIT1002_00490at 535.145 kb on + strandat 535.156 kb on + strandat 535.156 kb on + strandat 535.156 kb on + strandat 535.191 kb on + strandat 535.191 kb on + strandat 535.199 kb on - strandat 535.209 kb on - strandat 535.438 kb on + strand, within MIT1002_00491at 535.448 kb on + strand, within MIT1002_00491at 535.470 kb on - strand, within MIT1002_00491at 535.479 kb on - strand, within MIT1002_00491at 535.517 kb on - strand, within MIT1002_00491at 535.517 kb on - strand, within MIT1002_00491at 535.517 kb on - strand, within MIT1002_00491at 535.528 kb on + strand, within MIT1002_00491at 535.536 kb on - strand, within MIT1002_00491at 535.582 kb on - strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.680 kb on - strand, within MIT1002_00491at 535.680 kb on - strand, within MIT1002_00491at 535.680 kb on - strand, within MIT1002_00491at 535.688 kb on - strand, within MIT1002_00491at 535.691 kb on + strand, within MIT1002_00491at 535.701 kb on + strand, within MIT1002_00491at 535.722 kb on + strand, within MIT1002_00491at 535.751 kb on - strand, within MIT1002_00491at 535.865 kb on + strandat 535.865 kb on + strandat 535.873 kb on - strandat 535.888 kb on + strandat 535.927 kb on - strandat 536.077 kb on - strand, within MIT1002_00492at 536.088 kb on + strand, within MIT1002_00492at 536.189 kb on - strand, within MIT1002_00492at 536.281 kb on + strand, within MIT1002_00492at 536.289 kb on - strand, within MIT1002_00492at 536.291 kb on + strand, within MIT1002_00492at 536.301 kb on - strand, within MIT1002_00492at 536.303 kb on + strand, within MIT1002_00492at 536.303 kb on + strand, within MIT1002_00492at 536.383 kb on + strand, within MIT1002_00492at 536.419 kb on - strand, within MIT1002_00492at 536.464 kb on - strand, within MIT1002_00492at 536.464 kb on - strand, within MIT1002_00492at 536.472 kb on - strand, within MIT1002_00492at 536.505 kb on - strand, within MIT1002_00492at 536.548 kb on + strandat 536.557 kb on + strandat 536.565 kb on - strandat 536.575 kb on - strandat 536.670 kb on + strandat 536.686 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
remove
534,543 + MIT1002_00490 0.26 -0.3
534,548 + MIT1002_00490 0.26 +1.0
534,551 - MIT1002_00490 0.27 -0.5
534,551 - MIT1002_00490 0.27 -0.3
534,551 - MIT1002_00490 0.27 -1.0
534,551 - MIT1002_00490 0.27 +0.4
534,584 + MIT1002_00490 0.30 -0.7
534,589 + MIT1002_00490 0.31 +1.1
534,592 - MIT1002_00490 0.31 -1.2
534,614 - MIT1002_00490 0.34 +0.9
534,648 - MIT1002_00490 0.37 -1.2
534,648 - MIT1002_00490 0.37 -1.3
534,670 - MIT1002_00490 0.40 -0.0
534,773 + MIT1002_00490 0.51 -0.3
534,791 - MIT1002_00490 0.53 +0.5
534,809 + MIT1002_00490 0.55 -0.7
534,816 - MIT1002_00490 0.56 +0.9
534,822 - MIT1002_00490 0.57 -1.9
534,899 - MIT1002_00490 0.65 -1.9
534,973 + MIT1002_00490 0.73 -0.5
534,998 + MIT1002_00490 0.76 -1.0
534,998 + MIT1002_00490 0.76 +0.2
535,006 - MIT1002_00490 0.77 +0.7
535,011 - MIT1002_00490 0.77 -2.0
535,011 - MIT1002_00490 0.77 -1.5
535,011 - MIT1002_00490 0.77 -2.2
535,012 - MIT1002_00490 0.77 -1.7
535,089 + MIT1002_00490 0.86 +2.7
535,102 + MIT1002_00490 0.87 +0.5
535,112 + MIT1002_00490 0.89 -0.3
535,120 - MIT1002_00490 0.89 +1.0
535,145 + -0.7
535,156 + -0.1
535,156 + -0.4
535,156 + +0.8
535,191 + -0.1
535,191 + -1.3
535,199 - -1.5
535,209 - -0.4
535,438 + MIT1002_00491 0.15 -1.7
535,448 + MIT1002_00491 0.18 -0.6
535,470 - MIT1002_00491 0.23 +0.5
535,479 - MIT1002_00491 0.25 -1.5
535,517 - MIT1002_00491 0.34 +0.9
535,517 - MIT1002_00491 0.34 +0.0
535,517 - MIT1002_00491 0.34 -1.5
535,528 + MIT1002_00491 0.36 -0.8
535,536 - MIT1002_00491 0.38 -2.0
535,582 - MIT1002_00491 0.49 -0.2
535,672 + MIT1002_00491 0.70 -0.9
535,672 + MIT1002_00491 0.70 -1.4
535,672 + MIT1002_00491 0.70 +1.1
535,672 + MIT1002_00491 0.70 +1.7
535,680 - MIT1002_00491 0.72 +0.9
535,680 - MIT1002_00491 0.72 -0.9
535,680 - MIT1002_00491 0.72 -0.6
535,688 - MIT1002_00491 0.74 -1.2
535,691 + MIT1002_00491 0.74 -0.8
535,701 + MIT1002_00491 0.77 -0.2
535,722 + MIT1002_00491 0.82 -0.2
535,751 - MIT1002_00491 0.88 -0.7
535,865 + +0.5
535,865 + +1.3
535,873 - +0.2
535,888 + -0.1
535,927 - +0.3
536,077 - MIT1002_00492 0.22 -0.8
536,088 + MIT1002_00492 0.24 +0.9
536,189 - MIT1002_00492 0.39 -0.7
536,281 + MIT1002_00492 0.52 +1.6
536,289 - MIT1002_00492 0.53 -0.4
536,291 + MIT1002_00492 0.53 +0.8
536,301 - MIT1002_00492 0.55 -0.5
536,303 + MIT1002_00492 0.55 -0.9
536,303 + MIT1002_00492 0.55 +0.6
536,383 + MIT1002_00492 0.67 -0.2
536,419 - MIT1002_00492 0.72 -0.3
536,464 - MIT1002_00492 0.78 -2.5
536,464 - MIT1002_00492 0.78 +0.1
536,472 - MIT1002_00492 0.79 +0.9
536,505 - MIT1002_00492 0.84 -1.2
536,548 + -0.1
536,557 + -1.9
536,565 - -1.3
536,575 - -2.2
536,670 + -0.1
536,686 - -0.2

Or see this region's nucleotide sequence