Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00454

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00453 and MIT1002_00454 are separated by 136 nucleotidesMIT1002_00454 and MIT1002_00455 are separated by 44 nucleotides MIT1002_00453: MIT1002_00453 - type IV pilus assembly protein PilM, at 493,808 to 494,875 _00453 MIT1002_00454: MIT1002_00454 - Penicillin-binding protein 1A, at 495,012 to 497,675 _00454 MIT1002_00455: MIT1002_00455 - NAD-dependent malic enzyme, at 497,720 to 499,444 _00455 Position (kb) 495 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 494.160 kb on - strand, within MIT1002_00453at 494.170 kb on - strand, within MIT1002_00453at 494.206 kb on + strand, within MIT1002_00453at 494.220 kb on - strand, within MIT1002_00453at 494.287 kb on + strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.336 kb on + strand, within MIT1002_00453at 494.418 kb on - strand, within MIT1002_00453at 494.530 kb on + strand, within MIT1002_00453at 494.584 kb on + strand, within MIT1002_00453at 494.584 kb on + strand, within MIT1002_00453at 494.710 kb on + strand, within MIT1002_00453at 494.756 kb on + strand, within MIT1002_00453at 494.756 kb on + strand, within MIT1002_00453at 494.756 kb on + strand, within MIT1002_00453at 494.764 kb on - strand, within MIT1002_00453at 494.764 kb on - strand, within MIT1002_00453at 494.770 kb on - strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.799 kb on - strandat 494.799 kb on - strandat 494.799 kb on - strandat 494.799 kb on - strandat 494.912 kb on + strandat 494.945 kb on + strandat 494.952 kb on + strandat 495.166 kb on - strandat 495.339 kb on - strand, within MIT1002_00454at 496.063 kb on + strand, within MIT1002_00454at 496.237 kb on + strand, within MIT1002_00454at 496.319 kb on + strand, within MIT1002_00454at 496.348 kb on + strand, within MIT1002_00454at 496.356 kb on - strand, within MIT1002_00454at 496.356 kb on - strand, within MIT1002_00454at 496.447 kb on + strand, within MIT1002_00454at 496.514 kb on - strand, within MIT1002_00454at 496.526 kb on - strand, within MIT1002_00454at 496.526 kb on - strand, within MIT1002_00454at 496.585 kb on - strand, within MIT1002_00454at 496.695 kb on - strand, within MIT1002_00454at 496.761 kb on + strand, within MIT1002_00454at 497.249 kb on + strand, within MIT1002_00454at 497.257 kb on - strand, within MIT1002_00454at 497.395 kb on + strand, within MIT1002_00454at 497.522 kb on - strandat 497.547 kb on + strandat 497.644 kb on - strandat 497.697 kb on - strandat 497.698 kb on - strandat 497.710 kb on + strandat 497.876 kb on + strandat 497.884 kb on - strandat 497.892 kb on + strandat 497.922 kb on - strand, within MIT1002_00455at 497.922 kb on - strand, within MIT1002_00455at 497.954 kb on + strand, within MIT1002_00455at 497.962 kb on - strand, within MIT1002_00455at 498.053 kb on + strand, within MIT1002_00455at 498.060 kb on - strand, within MIT1002_00455at 498.096 kb on - strand, within MIT1002_00455at 498.117 kb on + strand, within MIT1002_00455at 498.168 kb on + strand, within MIT1002_00455at 498.277 kb on + strand, within MIT1002_00455at 498.277 kb on + strand, within MIT1002_00455at 498.285 kb on - strand, within MIT1002_00455at 498.373 kb on + strand, within MIT1002_00455at 498.381 kb on - strand, within MIT1002_00455at 498.459 kb on + strand, within MIT1002_00455at 498.468 kb on + strand, within MIT1002_00455at 498.496 kb on + strand, within MIT1002_00455at 498.496 kb on + strand, within MIT1002_00455at 498.504 kb on - strand, within MIT1002_00455at 498.504 kb on - strand, within MIT1002_00455at 498.564 kb on + strand, within MIT1002_00455at 498.567 kb on + strand, within MIT1002_00455at 498.630 kb on + strand, within MIT1002_00455at 498.639 kb on - strand, within MIT1002_00455at 498.665 kb on + strand, within MIT1002_00455at 498.665 kb on + strand, within MIT1002_00455

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
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494,160 - MIT1002_00453 0.33 +1.0
494,170 - MIT1002_00453 0.34 -1.4
494,206 + MIT1002_00453 0.37 -1.1
494,220 - MIT1002_00453 0.39 +0.2
494,287 + MIT1002_00453 0.45 +3.4
494,295 - MIT1002_00453 0.46 -0.2
494,295 - MIT1002_00453 0.46 +0.7
494,295 - MIT1002_00453 0.46 -0.7
494,295 - MIT1002_00453 0.46 -1.0
494,336 + MIT1002_00453 0.49 -0.6
494,418 - MIT1002_00453 0.57 -3.1
494,530 + MIT1002_00453 0.68 -1.9
494,584 + MIT1002_00453 0.73 -0.1
494,584 + MIT1002_00453 0.73 -0.1
494,710 + MIT1002_00453 0.84 -0.4
494,756 + MIT1002_00453 0.89 -0.6
494,756 + MIT1002_00453 0.89 -0.3
494,756 + MIT1002_00453 0.89 +0.5
494,764 - MIT1002_00453 0.90 -1.6
494,764 - MIT1002_00453 0.90 +1.4
494,770 - -0.6
494,791 + +0.1
494,791 + +0.2
494,791 + -0.2
494,791 + +0.0
494,791 + +1.7
494,799 - -1.3
494,799 - -0.7
494,799 - -1.3
494,799 - -0.8
494,912 + +0.6
494,945 + +1.1
494,952 + +0.5
495,166 - -1.3
495,339 - MIT1002_00454 0.12 -1.6
496,063 + MIT1002_00454 0.39 -0.7
496,237 + MIT1002_00454 0.46 -0.7
496,319 + MIT1002_00454 0.49 -2.2
496,348 + MIT1002_00454 0.50 -1.6
496,356 - MIT1002_00454 0.50 -0.7
496,356 - MIT1002_00454 0.50 -1.1
496,447 + MIT1002_00454 0.54 -2.1
496,514 - MIT1002_00454 0.56 -1.3
496,526 - MIT1002_00454 0.57 -1.1
496,526 - MIT1002_00454 0.57 -0.3
496,585 - MIT1002_00454 0.59 -1.1
496,695 - MIT1002_00454 0.63 -2.8
496,761 + MIT1002_00454 0.66 -1.1
497,249 + MIT1002_00454 0.84 -0.6
497,257 - MIT1002_00454 0.84 -1.1
497,395 + MIT1002_00454 0.89 -0.7
497,522 - -0.7
497,547 + -2.1
497,644 - +0.0
497,697 - +0.9
497,698 - -2.0
497,710 + -1.3
497,876 + -0.6
497,884 - -0.3
497,892 + +1.4
497,922 - MIT1002_00455 0.12 -2.1
497,922 - MIT1002_00455 0.12 -0.8
497,954 + MIT1002_00455 0.14 -0.2
497,962 - MIT1002_00455 0.14 +0.5
498,053 + MIT1002_00455 0.19 +0.2
498,060 - MIT1002_00455 0.20 -2.4
498,096 - MIT1002_00455 0.22 -0.0
498,117 + MIT1002_00455 0.23 -1.4
498,168 + MIT1002_00455 0.26 -0.8
498,277 + MIT1002_00455 0.32 -0.1
498,277 + MIT1002_00455 0.32 +0.1
498,285 - MIT1002_00455 0.33 -0.2
498,373 + MIT1002_00455 0.38 -0.1
498,381 - MIT1002_00455 0.38 -1.0
498,459 + MIT1002_00455 0.43 -0.6
498,468 + MIT1002_00455 0.43 -1.1
498,496 + MIT1002_00455 0.45 -2.8
498,496 + MIT1002_00455 0.45 +0.7
498,504 - MIT1002_00455 0.45 -1.2
498,504 - MIT1002_00455 0.45 +1.8
498,564 + MIT1002_00455 0.49 +0.1
498,567 + MIT1002_00455 0.49 -1.9
498,630 + MIT1002_00455 0.53 +0.1
498,639 - MIT1002_00455 0.53 +0.2
498,665 + MIT1002_00455 0.55 +0.2
498,665 + MIT1002_00455 0.55 -0.6

Or see this region's nucleotide sequence