Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00350

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00349 and MIT1002_00350 are separated by 126 nucleotidesMIT1002_00350 and MIT1002_00351 overlap by 20 nucleotides MIT1002_00349: MIT1002_00349 - hypothetical protein, at 374,270 to 376,528 _00349 MIT1002_00350: MIT1002_00350 - hypothetical protein, at 376,655 to 376,855 _00350 MIT1002_00351: MIT1002_00351 - Degradation activator, at 376,836 to 377,870 _00351 Position (kb) 376 377Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 375.691 kb on - strand, within MIT1002_00349at 375.701 kb on + strand, within MIT1002_00349at 375.729 kb on - strand, within MIT1002_00349at 375.737 kb on + strand, within MIT1002_00349at 375.744 kb on + strand, within MIT1002_00349at 375.745 kb on - strand, within MIT1002_00349at 375.755 kb on + strand, within MIT1002_00349at 375.763 kb on - strand, within MIT1002_00349at 375.763 kb on - strand, within MIT1002_00349at 375.777 kb on + strand, within MIT1002_00349at 375.793 kb on + strand, within MIT1002_00349at 375.853 kb on - strand, within MIT1002_00349at 375.888 kb on - strand, within MIT1002_00349at 375.904 kb on + strand, within MIT1002_00349at 375.959 kb on + strand, within MIT1002_00349at 376.014 kb on - strand, within MIT1002_00349at 376.063 kb on + strand, within MIT1002_00349at 376.070 kb on + strand, within MIT1002_00349at 376.071 kb on - strand, within MIT1002_00349at 376.077 kb on - strand, within MIT1002_00349at 376.078 kb on - strand, within MIT1002_00349at 376.089 kb on + strand, within MIT1002_00349at 376.140 kb on + strand, within MIT1002_00349at 376.148 kb on - strand, within MIT1002_00349at 376.161 kb on + strand, within MIT1002_00349at 376.169 kb on - strand, within MIT1002_00349at 376.183 kb on - strand, within MIT1002_00349at 376.196 kb on + strand, within MIT1002_00349at 376.208 kb on + strand, within MIT1002_00349at 376.287 kb on + strand, within MIT1002_00349at 376.287 kb on + strand, within MIT1002_00349at 376.386 kb on + strandat 376.396 kb on + strandat 376.471 kb on + strandat 376.471 kb on + strandat 376.471 kb on + strandat 376.479 kb on - strandat 376.479 kb on - strandat 376.485 kb on - strandat 376.486 kb on + strandat 376.566 kb on - strandat 376.602 kb on - strandat 376.722 kb on + strand, within MIT1002_00350at 376.772 kb on + strand, within MIT1002_00350at 376.780 kb on - strand, within MIT1002_00350at 376.860 kb on + strandat 376.870 kb on + strandat 376.911 kb on - strandat 376.963 kb on + strand, within MIT1002_00351at 376.983 kb on + strand, within MIT1002_00351at 377.061 kb on - strand, within MIT1002_00351at 377.066 kb on + strand, within MIT1002_00351at 377.076 kb on + strand, within MIT1002_00351at 377.086 kb on + strand, within MIT1002_00351at 377.091 kb on - strand, within MIT1002_00351at 377.094 kb on - strand, within MIT1002_00351at 377.119 kb on + strand, within MIT1002_00351at 377.152 kb on + strand, within MIT1002_00351at 377.218 kb on - strand, within MIT1002_00351at 377.233 kb on - strand, within MIT1002_00351at 377.246 kb on + strand, within MIT1002_00351at 377.254 kb on - strand, within MIT1002_00351at 377.306 kb on - strand, within MIT1002_00351at 377.365 kb on + strand, within MIT1002_00351at 377.425 kb on + strand, within MIT1002_00351at 377.460 kb on + strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.483 kb on - strand, within MIT1002_00351at 377.518 kb on + strand, within MIT1002_00351at 377.526 kb on - strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.651 kb on + strand, within MIT1002_00351at 377.703 kb on - strand, within MIT1002_00351at 377.831 kb on - strandat 377.833 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.853 kb on + strandat 377.853 kb on + strandat 377.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
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375,691 - MIT1002_00349 0.63 +0.2
375,701 + MIT1002_00349 0.63 +0.2
375,729 - MIT1002_00349 0.65 +0.8
375,737 + MIT1002_00349 0.65 +1.0
375,744 + MIT1002_00349 0.65 -0.1
375,745 - MIT1002_00349 0.65 -0.4
375,755 + MIT1002_00349 0.66 +0.9
375,763 - MIT1002_00349 0.66 -0.5
375,763 - MIT1002_00349 0.66 +0.4
375,777 + MIT1002_00349 0.67 -0.1
375,793 + MIT1002_00349 0.67 -0.1
375,853 - MIT1002_00349 0.70 -0.1
375,888 - MIT1002_00349 0.72 +0.8
375,904 + MIT1002_00349 0.72 +0.9
375,959 + MIT1002_00349 0.75 +0.3
376,014 - MIT1002_00349 0.77 -0.2
376,063 + MIT1002_00349 0.79 -0.4
376,070 + MIT1002_00349 0.80 +1.5
376,071 - MIT1002_00349 0.80 +0.0
376,077 - MIT1002_00349 0.80 +0.2
376,078 - MIT1002_00349 0.80 -0.9
376,089 + MIT1002_00349 0.81 +0.2
376,140 + MIT1002_00349 0.83 +1.0
376,148 - MIT1002_00349 0.83 +0.5
376,161 + MIT1002_00349 0.84 -0.0
376,169 - MIT1002_00349 0.84 -0.0
376,183 - MIT1002_00349 0.85 -0.5
376,196 + MIT1002_00349 0.85 -1.6
376,208 + MIT1002_00349 0.86 -0.8
376,287 + MIT1002_00349 0.89 +0.9
376,287 + MIT1002_00349 0.89 +0.2
376,386 + +1.8
376,396 + +2.2
376,471 + -0.5
376,471 + -2.0
376,471 + -0.0
376,479 - +0.7
376,479 - -0.1
376,485 - -0.3
376,486 + -0.2
376,566 - +0.2
376,602 - +0.4
376,722 + MIT1002_00350 0.33 -0.6
376,772 + MIT1002_00350 0.58 -1.5
376,780 - MIT1002_00350 0.62 -2.1
376,860 + -1.1
376,870 + -0.7
376,911 - +0.4
376,963 + MIT1002_00351 0.12 -0.4
376,983 + MIT1002_00351 0.14 -0.5
377,061 - MIT1002_00351 0.22 -3.6
377,066 + MIT1002_00351 0.22 -0.9
377,076 + MIT1002_00351 0.23 -0.8
377,086 + MIT1002_00351 0.24 -0.7
377,091 - MIT1002_00351 0.25 -1.7
377,094 - MIT1002_00351 0.25 +0.7
377,119 + MIT1002_00351 0.27 +0.1
377,152 + MIT1002_00351 0.31 -0.7
377,218 - MIT1002_00351 0.37 -1.8
377,233 - MIT1002_00351 0.38 -0.1
377,246 + MIT1002_00351 0.40 -0.7
377,254 - MIT1002_00351 0.40 -2.7
377,306 - MIT1002_00351 0.45 +0.2
377,365 + MIT1002_00351 0.51 +0.1
377,425 + MIT1002_00351 0.57 +0.1
377,460 + MIT1002_00351 0.60 -2.5
377,468 - MIT1002_00351 0.61 -1.2
377,468 - MIT1002_00351 0.61 -2.0
377,468 - MIT1002_00351 0.61 +0.7
377,468 - MIT1002_00351 0.61 -2.6
377,483 - MIT1002_00351 0.63 -0.8
377,518 + MIT1002_00351 0.66 -3.5
377,526 - MIT1002_00351 0.67 -1.8
377,648 + MIT1002_00351 0.78 -2.0
377,648 + MIT1002_00351 0.78 -0.7
377,648 + MIT1002_00351 0.78 -0.3
377,651 + MIT1002_00351 0.79 -2.2
377,703 - MIT1002_00351 0.84 +0.7
377,831 - -4.0
377,833 + -3.2
377,848 + +0.9
377,848 + -0.4
377,848 + -1.2
377,848 + -0.1
377,848 + -0.3
377,848 + +1.2
377,848 + -0.2
377,853 + -0.6
377,853 + +0.3
377,854 - -0.2

Or see this region's nucleotide sequence