Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00256 and MIT1002_00257 are separated by 34 nucleotides MIT1002_00257 and MIT1002_00258 are separated by 68 nucleotides MIT1002_00258 and MIT1002_00259 are separated by 263 nucleotides
MIT1002_00256: MIT1002_00256 - hypothetical protein, at 285,275 to 285,754
_00256
MIT1002_00257: MIT1002_00257 - hypothetical protein, at 285,789 to 286,271
_00257
MIT1002_00258: MIT1002_00258 - putative membrane protein, at 286,340 to 286,984
_00258
MIT1002_00259: MIT1002_00259 - hypothetical protein, at 287,248 to 288,231
_00259
Position (kb) 286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 285.386 kb on + strand, within MIT1002_00256 at 285.386 kb on + strand, within MIT1002_00256 at 285.386 kb on + strand, within MIT1002_00256 at 285.394 kb on - strand, within MIT1002_00256 at 285.458 kb on + strand, within MIT1002_00256 at 285.458 kb on + strand, within MIT1002_00256 at 285.466 kb on - strand, within MIT1002_00256 at 285.466 kb on - strand, within MIT1002_00256 at 285.511 kb on + strand, within MIT1002_00256 at 285.524 kb on - strand, within MIT1002_00256 at 285.707 kb on - strand at 285.709 kb on + strand at 285.717 kb on - strand at 285.717 kb on - strand at 285.717 kb on - strand at 285.717 kb on - strand at 285.719 kb on - strand at 285.721 kb on + strand at 285.749 kb on + strand at 285.749 kb on + strand at 285.752 kb on - strand at 285.755 kb on + strand at 285.850 kb on + strand, within MIT1002_00257 at 285.909 kb on + strand, within MIT1002_00257 at 285.909 kb on + strand, within MIT1002_00257 at 285.917 kb on - strand, within MIT1002_00257 at 285.926 kb on + strand, within MIT1002_00257 at 285.992 kb on + strand, within MIT1002_00257 at 285.992 kb on + strand, within MIT1002_00257 at 286.000 kb on + strand, within MIT1002_00257 at 286.096 kb on - strand, within MIT1002_00257 at 286.098 kb on + strand, within MIT1002_00257 at 286.113 kb on + strand, within MIT1002_00257 at 286.218 kb on - strand, within MIT1002_00257 at 286.234 kb on + strand at 286.257 kb on + strand at 286.257 kb on + strand at 286.265 kb on - strand at 286.284 kb on - strand at 286.342 kb on - strand at 286.412 kb on + strand, within MIT1002_00258 at 286.436 kb on + strand, within MIT1002_00258 at 286.458 kb on + strand, within MIT1002_00258 at 286.458 kb on + strand, within MIT1002_00258 at 286.458 kb on + strand, within MIT1002_00258 at 286.458 kb on + strand, within MIT1002_00258 at 286.533 kb on - strand, within MIT1002_00258 at 286.533 kb on - strand, within MIT1002_00258 at 286.537 kb on + strand, within MIT1002_00258 at 286.537 kb on + strand, within MIT1002_00258 at 286.545 kb on - strand, within MIT1002_00258 at 286.545 kb on - strand, within MIT1002_00258 at 286.707 kb on - strand, within MIT1002_00258 at 286.707 kb on - strand, within MIT1002_00258 at 286.707 kb on - strand, within MIT1002_00258 at 286.754 kb on + strand, within MIT1002_00258 at 286.800 kb on + strand, within MIT1002_00258 at 286.853 kb on - strand, within MIT1002_00258 at 286.881 kb on + strand, within MIT1002_00258 at 286.900 kb on + strand, within MIT1002_00258 at 286.900 kb on + strand, within MIT1002_00258 at 286.908 kb on - strand, within MIT1002_00258 at 286.908 kb on - strand, within MIT1002_00258 at 286.913 kb on - strand, within MIT1002_00258 at 286.921 kb on - strand at 286.938 kb on + strand at 286.948 kb on + strand at 286.948 kb on + strand at 286.948 kb on + strand at 286.948 kb on + strand at 286.956 kb on - strand at 286.956 kb on - strand at 286.956 kb on - strand at 286.956 kb on - strand at 286.956 kb on - strand at 286.966 kb on - strand at 286.971 kb on + strand at 286.992 kb on - strand at 287.081 kb on - strand at 287.091 kb on + strand at 287.099 kb on - strand at 287.099 kb on - strand at 287.099 kb on - strand at 287.099 kb on - strand at 287.104 kb on + strand at 287.104 kb on + strand at 287.179 kb on - strand at 287.181 kb on + strand at 287.181 kb on + strand at 287.181 kb on + strand at 287.181 kb on + strand at 287.181 kb on + strand at 287.189 kb on - strand at 287.262 kb on + strand at 287.314 kb on - strand at 287.436 kb on + strand, within MIT1002_00259 at 287.661 kb on - strand, within MIT1002_00259 at 287.687 kb on + strand, within MIT1002_00259 at 287.688 kb on + strand, within MIT1002_00259 at 287.761 kb on + strand, within MIT1002_00259 at 287.813 kb on - strand, within MIT1002_00259 at 287.813 kb on - strand, within MIT1002_00259 at 287.867 kb on - strand, within MIT1002_00259 at 287.953 kb on - strand, within MIT1002_00259 at 287.953 kb on - strand, within MIT1002_00259 at 287.970 kb on + strand, within MIT1002_00259 at 287.978 kb on - strand, within MIT1002_00259
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 285,386 + MIT1002_00256 0.23 +0.2 285,386 + MIT1002_00256 0.23 +0.9 285,386 + MIT1002_00256 0.23 -0.4 285,394 - MIT1002_00256 0.25 -0.2 285,458 + MIT1002_00256 0.38 -1.5 285,458 + MIT1002_00256 0.38 -0.6 285,466 - MIT1002_00256 0.40 +0.2 285,466 - MIT1002_00256 0.40 +1.4 285,511 + MIT1002_00256 0.49 -0.1 285,524 - MIT1002_00256 0.52 +0.2 285,707 - +0.3 285,709 + +0.0 285,717 - -0.2 285,717 - -1.0 285,717 - -0.1 285,717 - +0.5 285,719 - +0.4 285,721 + -0.9 285,749 + -0.0 285,749 + -1.0 285,752 - -1.6 285,755 + +0.8 285,850 + MIT1002_00257 0.13 -0.2 285,909 + MIT1002_00257 0.25 +0.5 285,909 + MIT1002_00257 0.25 +1.2 285,917 - MIT1002_00257 0.27 +0.5 285,926 + MIT1002_00257 0.28 +0.2 285,992 + MIT1002_00257 0.42 +0.7 285,992 + MIT1002_00257 0.42 -1.2 286,000 + MIT1002_00257 0.44 +0.8 286,096 - MIT1002_00257 0.64 -0.2 286,098 + MIT1002_00257 0.64 -0.7 286,113 + MIT1002_00257 0.67 -1.0 286,218 - MIT1002_00257 0.89 +0.5 286,234 + -1.8 286,257 + -0.2 286,257 + -2.3 286,265 - -0.1 286,284 - +0.1 286,342 - +1.4 286,412 + MIT1002_00258 0.11 -0.5 286,436 + MIT1002_00258 0.15 -1.5 286,458 + MIT1002_00258 0.18 -0.1 286,458 + MIT1002_00258 0.18 -0.2 286,458 + MIT1002_00258 0.18 -0.7 286,458 + MIT1002_00258 0.18 -1.2 286,533 - MIT1002_00258 0.30 +0.3 286,533 - MIT1002_00258 0.30 -1.7 286,537 + MIT1002_00258 0.31 -0.1 286,537 + MIT1002_00258 0.31 -0.6 286,545 - MIT1002_00258 0.32 -3.1 286,545 - MIT1002_00258 0.32 -0.1 286,707 - MIT1002_00258 0.57 -0.6 286,707 - MIT1002_00258 0.57 +0.6 286,707 - MIT1002_00258 0.57 -0.0 286,754 + MIT1002_00258 0.64 -1.1 286,800 + MIT1002_00258 0.71 +2.5 286,853 - MIT1002_00258 0.80 +1.2 286,881 + MIT1002_00258 0.84 +0.3 286,900 + MIT1002_00258 0.87 +1.2 286,900 + MIT1002_00258 0.87 -0.8 286,908 - MIT1002_00258 0.88 +0.6 286,908 - MIT1002_00258 0.88 -0.7 286,913 - MIT1002_00258 0.89 +0.2 286,921 - -0.7 286,938 + +0.1 286,948 + -1.3 286,948 + -0.0 286,948 + +0.9 286,948 + -1.8 286,956 - -0.3 286,956 - -0.3 286,956 - -1.1 286,956 - -0.2 286,956 - +1.0 286,966 - -1.0 286,971 + +1.5 286,992 - +0.5 287,081 - +0.4 287,091 + +0.7 287,099 - -0.8 287,099 - +0.1 287,099 - -0.0 287,099 - -0.5 287,104 + +0.3 287,104 + +0.4 287,179 - +1.3 287,181 + -0.7 287,181 + -0.5 287,181 + -0.8 287,181 + -1.2 287,181 + -0.8 287,189 - -1.4 287,262 + +0.0 287,314 - +0.5 287,436 + MIT1002_00259 0.19 +0.2 287,661 - MIT1002_00259 0.42 +0.3 287,687 + MIT1002_00259 0.45 +1.9 287,688 + MIT1002_00259 0.45 +0.1 287,761 + MIT1002_00259 0.52 -0.7 287,813 - MIT1002_00259 0.57 -1.1 287,813 - MIT1002_00259 0.57 -0.7 287,867 - MIT1002_00259 0.63 +1.7 287,953 - MIT1002_00259 0.72 +0.2 287,953 - MIT1002_00259 0.72 +0.9 287,970 + MIT1002_00259 0.73 -0.5 287,978 - MIT1002_00259 0.74 +0.2
Or see this region's nucleotide sequence