Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00250

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00248 and MIT1002_00249 are separated by 418 nucleotidesMIT1002_00249 and MIT1002_00250 overlap by 1 nucleotidesMIT1002_00250 and MIT1002_00251 overlap by 4 nucleotides MIT1002_00248: MIT1002_00248 - hypothetical protein, at 276,115 to 276,249 _00248 MIT1002_00249: MIT1002_00249 - Protein of unknown function, DUF, at 276,668 to 277,177 _00249 MIT1002_00250: MIT1002_00250 - type I secretion outer membrane protein, TolC family, at 277,177 to 278,541 _00250 MIT1002_00251: MIT1002_00251 - Cation efflux system protein CusB precursor, at 278,538 to 280,556 _00251 Position (kb) 277 278 279Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 276.319 kb on + strandat 276.379 kb on + strandat 276.486 kb on - strandat 276.494 kb on - strandat 276.496 kb on + strandat 276.496 kb on + strandat 276.501 kb on + strandat 276.501 kb on + strandat 276.501 kb on + strandat 276.504 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.554 kb on - strandat 276.554 kb on - strandat 276.564 kb on - strandat 276.590 kb on - strandat 276.598 kb on + strandat 276.604 kb on + strandat 276.612 kb on - strandat 276.635 kb on - strandat 276.697 kb on + strandat 276.737 kb on - strand, within MIT1002_00249at 276.760 kb on - strand, within MIT1002_00249at 276.770 kb on - strand, within MIT1002_00249at 276.794 kb on - strand, within MIT1002_00249at 276.819 kb on - strand, within MIT1002_00249at 276.819 kb on - strand, within MIT1002_00249at 276.831 kb on + strand, within MIT1002_00249at 276.925 kb on + strand, within MIT1002_00249at 276.974 kb on + strand, within MIT1002_00249at 277.036 kb on - strand, within MIT1002_00249at 277.098 kb on - strand, within MIT1002_00249at 277.133 kb on + strandat 277.141 kb on - strandat 277.156 kb on + strandat 277.158 kb on + strandat 277.158 kb on - strandat 277.313 kb on + strandat 277.316 kb on - strand, within MIT1002_00250at 277.339 kb on - strand, within MIT1002_00250at 277.344 kb on - strand, within MIT1002_00250at 277.349 kb on - strand, within MIT1002_00250at 277.349 kb on - strand, within MIT1002_00250at 277.349 kb on - strand, within MIT1002_00250at 277.434 kb on + strand, within MIT1002_00250at 277.434 kb on + strand, within MIT1002_00250at 277.454 kb on - strand, within MIT1002_00250at 277.523 kb on + strand, within MIT1002_00250at 277.531 kb on - strand, within MIT1002_00250at 277.534 kb on + strand, within MIT1002_00250at 277.534 kb on + strand, within MIT1002_00250at 277.536 kb on - strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.547 kb on - strand, within MIT1002_00250at 277.547 kb on - strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.624 kb on - strand, within MIT1002_00250at 277.664 kb on - strand, within MIT1002_00250at 277.690 kb on + strand, within MIT1002_00250at 277.919 kb on - strand, within MIT1002_00250at 278.029 kb on - strand, within MIT1002_00250at 278.069 kb on - strand, within MIT1002_00250at 278.076 kb on + strand, within MIT1002_00250at 278.088 kb on + strand, within MIT1002_00250at 278.192 kb on + strand, within MIT1002_00250at 278.199 kb on - strand, within MIT1002_00250at 278.200 kb on - strand, within MIT1002_00250at 278.200 kb on - strand, within MIT1002_00250at 278.270 kb on - strand, within MIT1002_00250at 278.345 kb on + strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.440 kb on + strandat 278.440 kb on + strandat 278.450 kb on + strandat 278.553 kb on + strandat 278.569 kb on + strandat 278.581 kb on + strandat 278.583 kb on + strandat 278.630 kb on - strandat 278.669 kb on + strandat 278.677 kb on - strandat 278.677 kb on - strandat 278.677 kb on - strandat 278.677 kb on - strandat 278.818 kb on + strand, within MIT1002_00251at 278.824 kb on + strand, within MIT1002_00251at 278.841 kb on + strand, within MIT1002_00251at 278.849 kb on - strand, within MIT1002_00251at 278.886 kb on + strand, within MIT1002_00251at 278.889 kb on - strand, within MIT1002_00251at 278.993 kb on + strand, within MIT1002_00251at 279.009 kb on - strand, within MIT1002_00251at 279.023 kb on - strand, within MIT1002_00251at 279.077 kb on - strand, within MIT1002_00251at 279.163 kb on + strand, within MIT1002_00251at 279.180 kb on + strand, within MIT1002_00251at 279.180 kb on + strand, within MIT1002_00251at 279.272 kb on + strand, within MIT1002_00251at 279.272 kb on + strand, within MIT1002_00251at 279.272 kb on + strand, within MIT1002_00251at 279.280 kb on - strand, within MIT1002_00251at 279.280 kb on - strand, within MIT1002_00251at 279.282 kb on + strand, within MIT1002_00251at 279.291 kb on - strand, within MIT1002_00251at 279.400 kb on + strand, within MIT1002_00251at 279.400 kb on + strand, within MIT1002_00251at 279.408 kb on - strand, within MIT1002_00251at 279.408 kb on - strand, within MIT1002_00251at 279.408 kb on - strand, within MIT1002_00251at 279.423 kb on - strand, within MIT1002_00251at 279.423 kb on - strand, within MIT1002_00251at 279.425 kb on + strand, within MIT1002_00251

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
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276,319 + -0.2
276,379 + +0.4
276,486 - +0.0
276,494 - -1.6
276,496 + +0.5
276,496 + -0.6
276,501 + +0.3
276,501 + +1.1
276,501 + -0.5
276,504 - -0.2
276,509 - +1.0
276,509 - +0.2
276,509 - +1.5
276,509 - +0.6
276,509 - -0.3
276,509 - -0.4
276,554 - -0.5
276,554 - +0.7
276,564 - -0.5
276,590 - -0.2
276,598 + +0.1
276,604 + -1.2
276,612 - +0.0
276,635 - +0.5
276,697 + -1.4
276,737 - MIT1002_00249 0.14 -0.5
276,760 - MIT1002_00249 0.18 +0.1
276,770 - MIT1002_00249 0.20 -0.2
276,794 - MIT1002_00249 0.25 +0.2
276,819 - MIT1002_00249 0.30 +0.1
276,819 - MIT1002_00249 0.30 -0.2
276,831 + MIT1002_00249 0.32 +0.1
276,925 + MIT1002_00249 0.50 -1.0
276,974 + MIT1002_00249 0.60 -0.4
277,036 - MIT1002_00249 0.72 +0.3
277,098 - MIT1002_00249 0.84 +0.1
277,133 + -1.4
277,141 - +0.3
277,156 + -1.7
277,158 + +0.8
277,158 - -0.9
277,313 + -0.8
277,316 - MIT1002_00250 0.10 -0.3
277,339 - MIT1002_00250 0.12 +0.7
277,344 - MIT1002_00250 0.12 +0.6
277,349 - MIT1002_00250 0.13 -0.3
277,349 - MIT1002_00250 0.13 +0.3
277,349 - MIT1002_00250 0.13 -1.6
277,434 + MIT1002_00250 0.19 +0.4
277,434 + MIT1002_00250 0.19 -1.0
277,454 - MIT1002_00250 0.20 +0.2
277,523 + MIT1002_00250 0.25 -1.4
277,531 - MIT1002_00250 0.26 -0.1
277,534 + MIT1002_00250 0.26 -0.4
277,534 + MIT1002_00250 0.26 -0.4
277,536 - MIT1002_00250 0.26 -0.1
277,539 + MIT1002_00250 0.27 +0.2
277,539 + MIT1002_00250 0.27 +1.1
277,539 + MIT1002_00250 0.27 -1.4
277,539 + MIT1002_00250 0.27 -1.1
277,539 + MIT1002_00250 0.27 +0.7
277,547 - MIT1002_00250 0.27 -4.8
277,547 - MIT1002_00250 0.27 -0.0
277,616 + MIT1002_00250 0.32 -1.5
277,616 + MIT1002_00250 0.32 -2.0
277,616 + MIT1002_00250 0.32 +0.3
277,616 + MIT1002_00250 0.32 -0.5
277,624 - MIT1002_00250 0.33 -1.6
277,664 - MIT1002_00250 0.36 -1.0
277,690 + MIT1002_00250 0.38 -0.5
277,919 - MIT1002_00250 0.54 -0.8
278,029 - MIT1002_00250 0.62 +0.3
278,069 - MIT1002_00250 0.65 -0.7
278,076 + MIT1002_00250 0.66 -0.7
278,088 + MIT1002_00250 0.67 -1.0
278,192 + MIT1002_00250 0.74 -1.8
278,199 - MIT1002_00250 0.75 +0.0
278,200 - MIT1002_00250 0.75 +0.7
278,200 - MIT1002_00250 0.75 +0.6
278,270 - MIT1002_00250 0.80 -0.8
278,345 + MIT1002_00250 0.86 +0.2
278,370 - MIT1002_00250 0.87 -0.6
278,370 - MIT1002_00250 0.87 +0.4
278,370 - MIT1002_00250 0.87 -0.1
278,370 - MIT1002_00250 0.87 -2.1
278,440 + -0.0
278,440 + -0.9
278,450 + +0.5
278,553 + +0.8
278,569 + -0.5
278,581 + -0.5
278,583 + -1.8
278,630 - -0.8
278,669 + +0.1
278,677 - -0.7
278,677 - -0.2
278,677 - -2.7
278,677 - +0.3
278,818 + MIT1002_00251 0.14 +0.1
278,824 + MIT1002_00251 0.14 -0.3
278,841 + MIT1002_00251 0.15 -2.4
278,849 - MIT1002_00251 0.15 -0.8
278,886 + MIT1002_00251 0.17 -3.3
278,889 - MIT1002_00251 0.17 +1.0
278,993 + MIT1002_00251 0.23 +0.7
279,009 - MIT1002_00251 0.23 -0.5
279,023 - MIT1002_00251 0.24 -0.6
279,077 - MIT1002_00251 0.27 +0.1
279,163 + MIT1002_00251 0.31 +1.1
279,180 + MIT1002_00251 0.32 +0.5
279,180 + MIT1002_00251 0.32 +0.3
279,272 + MIT1002_00251 0.36 -0.6
279,272 + MIT1002_00251 0.36 +0.7
279,272 + MIT1002_00251 0.36 -0.4
279,280 - MIT1002_00251 0.37 -0.2
279,280 - MIT1002_00251 0.37 -0.8
279,282 + MIT1002_00251 0.37 +0.1
279,291 - MIT1002_00251 0.37 -0.0
279,400 + MIT1002_00251 0.43 +0.2
279,400 + MIT1002_00251 0.43 -0.1
279,408 - MIT1002_00251 0.43 +0.8
279,408 - MIT1002_00251 0.43 -0.6
279,408 - MIT1002_00251 0.43 -0.8
279,423 - MIT1002_00251 0.44 -0.7
279,423 - MIT1002_00251 0.44 +1.0
279,425 + MIT1002_00251 0.44 +0.4

Or see this region's nucleotide sequence