Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00232 and MIT1002_00233 are separated by 157 nucleotides MIT1002_00233 and MIT1002_00234 are separated by 154 nucleotides
MIT1002_00232: MIT1002_00232 - Beta-galactosidase, at 258,126 to 261,245
_00232
MIT1002_00233: MIT1002_00233 - Dye resistance protein, at 261,403 to 262,110
_00233
MIT1002_00234: MIT1002_00234 - Sensor protein ZraS, at 262,265 to 263,911
_00234
Position (kb) 261
262
263 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 260.420 kb on - strand, within MIT1002_00232 at 260.430 kb on + strand, within MIT1002_00232 at 260.523 kb on + strand, within MIT1002_00232 at 260.531 kb on - strand, within MIT1002_00232 at 260.631 kb on + strand, within MIT1002_00232 at 260.631 kb on + strand, within MIT1002_00232 at 260.640 kb on - strand, within MIT1002_00232 at 260.646 kb on - strand, within MIT1002_00232 at 260.646 kb on - strand, within MIT1002_00232 at 260.653 kb on + strand, within MIT1002_00232 at 260.661 kb on - strand, within MIT1002_00232 at 260.731 kb on - strand, within MIT1002_00232 at 260.731 kb on - strand, within MIT1002_00232 at 260.793 kb on - strand, within MIT1002_00232 at 260.871 kb on - strand, within MIT1002_00232 at 260.871 kb on - strand, within MIT1002_00232 at 260.874 kb on + strand, within MIT1002_00232 at 260.879 kb on + strand, within MIT1002_00232 at 260.887 kb on - strand, within MIT1002_00232 at 260.924 kb on - strand, within MIT1002_00232 at 260.937 kb on - strand at 261.027 kb on - strand at 261.099 kb on + strand at 261.099 kb on + strand at 261.107 kb on - strand at 261.107 kb on - strand at 261.119 kb on - strand at 261.132 kb on + strand at 261.140 kb on - strand at 261.172 kb on - strand at 261.234 kb on + strand at 261.252 kb on + strand at 261.260 kb on - strand at 261.399 kb on + strand at 261.399 kb on + strand at 261.402 kb on - strand at 261.407 kb on - strand at 261.516 kb on + strand, within MIT1002_00233 at 261.538 kb on + strand, within MIT1002_00233 at 261.591 kb on - strand, within MIT1002_00233 at 261.740 kb on - strand, within MIT1002_00233 at 261.877 kb on + strand, within MIT1002_00233 at 261.902 kb on + strand, within MIT1002_00233 at 261.906 kb on - strand, within MIT1002_00233 at 262.023 kb on + strand, within MIT1002_00233 at 262.031 kb on - strand, within MIT1002_00233 at 262.031 kb on - strand, within MIT1002_00233 at 262.112 kb on + strand at 262.114 kb on + strand at 262.122 kb on - strand at 262.224 kb on - strand at 262.224 kb on - strand at 262.224 kb on - strand at 262.381 kb on - strand at 262.485 kb on + strand, within MIT1002_00234 at 262.494 kb on + strand, within MIT1002_00234 at 262.531 kb on + strand, within MIT1002_00234 at 262.562 kb on - strand, within MIT1002_00234 at 262.562 kb on - strand, within MIT1002_00234 at 262.636 kb on + strand, within MIT1002_00234 at 262.636 kb on + strand, within MIT1002_00234 at 262.644 kb on - strand, within MIT1002_00234 at 262.653 kb on + strand, within MIT1002_00234 at 262.702 kb on - strand, within MIT1002_00234 at 262.761 kb on + strand, within MIT1002_00234 at 262.769 kb on - strand, within MIT1002_00234 at 262.779 kb on - strand, within MIT1002_00234 at 262.789 kb on - strand, within MIT1002_00234 at 262.797 kb on + strand, within MIT1002_00234 at 262.858 kb on + strand, within MIT1002_00234 at 262.906 kb on + strand, within MIT1002_00234 at 262.914 kb on - strand, within MIT1002_00234 at 262.924 kb on - strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.943 kb on + strand, within MIT1002_00234 at 262.943 kb on + strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.951 kb on - strand, within MIT1002_00234 at 263.075 kb on - strand, within MIT1002_00234 at 263.090 kb on - strand, within MIT1002_00234
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 260,420 - MIT1002_00232 0.74 -0.4 260,430 + MIT1002_00232 0.74 +0.6 260,523 + MIT1002_00232 0.77 -0.3 260,531 - MIT1002_00232 0.77 +0.8 260,631 + MIT1002_00232 0.80 +0.9 260,631 + MIT1002_00232 0.80 +0.9 260,640 - MIT1002_00232 0.81 -2.3 260,646 - MIT1002_00232 0.81 -0.1 260,646 - MIT1002_00232 0.81 +2.3 260,653 + MIT1002_00232 0.81 -0.4 260,661 - MIT1002_00232 0.81 -0.3 260,731 - MIT1002_00232 0.83 +1.5 260,731 - MIT1002_00232 0.83 +1.2 260,793 - MIT1002_00232 0.85 -0.2 260,871 - MIT1002_00232 0.88 -0.1 260,871 - MIT1002_00232 0.88 +0.5 260,874 + MIT1002_00232 0.88 -2.4 260,879 + MIT1002_00232 0.88 -1.0 260,887 - MIT1002_00232 0.88 -0.6 260,924 - MIT1002_00232 0.90 -0.6 260,937 - +0.7 261,027 - -0.8 261,099 + +2.6 261,099 + +0.1 261,107 - -0.0 261,107 - -0.7 261,119 - +0.9 261,132 + +0.7 261,140 - +2.2 261,172 - -1.1 261,234 + -0.4 261,252 + -0.3 261,260 - +1.2 261,399 + +0.5 261,399 + +0.5 261,402 - +1.8 261,407 - -1.8 261,516 + MIT1002_00233 0.16 -0.8 261,538 + MIT1002_00233 0.19 -1.7 261,591 - MIT1002_00233 0.27 -2.3 261,740 - MIT1002_00233 0.48 +1.6 261,877 + MIT1002_00233 0.67 -2.4 261,902 + MIT1002_00233 0.70 +0.6 261,906 - MIT1002_00233 0.71 -1.8 262,023 + MIT1002_00233 0.88 -3.8 262,031 - MIT1002_00233 0.89 -1.1 262,031 - MIT1002_00233 0.89 -2.1 262,112 + -0.2 262,114 + -2.9 262,122 - -1.4 262,224 - -0.8 262,224 - +0.9 262,224 - -2.4 262,381 - +1.0 262,485 + MIT1002_00234 0.13 +0.4 262,494 + MIT1002_00234 0.14 +0.7 262,531 + MIT1002_00234 0.16 +0.3 262,562 - MIT1002_00234 0.18 +0.1 262,562 - MIT1002_00234 0.18 -0.6 262,636 + MIT1002_00234 0.23 +0.5 262,636 + MIT1002_00234 0.23 +1.0 262,644 - MIT1002_00234 0.23 +0.6 262,653 + MIT1002_00234 0.24 -1.1 262,702 - MIT1002_00234 0.27 +0.7 262,761 + MIT1002_00234 0.30 +0.2 262,769 - MIT1002_00234 0.31 +0.6 262,779 - MIT1002_00234 0.31 -2.4 262,789 - MIT1002_00234 0.32 +0.7 262,797 + MIT1002_00234 0.32 -0.2 262,858 + MIT1002_00234 0.36 +1.7 262,906 + MIT1002_00234 0.39 +0.3 262,914 - MIT1002_00234 0.39 +0.3 262,924 - MIT1002_00234 0.40 -1.3 262,942 + MIT1002_00234 0.41 +0.6 262,942 + MIT1002_00234 0.41 -1.5 262,942 + MIT1002_00234 0.41 +0.4 262,942 + MIT1002_00234 0.41 -0.2 262,943 + MIT1002_00234 0.41 +0.4 262,943 + MIT1002_00234 0.41 +0.4 262,950 - MIT1002_00234 0.42 -2.8 262,950 - MIT1002_00234 0.42 -0.0 262,950 - MIT1002_00234 0.42 -0.4 262,950 - MIT1002_00234 0.42 +0.6 262,951 - MIT1002_00234 0.42 -1.5 263,075 - MIT1002_00234 0.49 -0.8 263,090 - MIT1002_00234 0.50 +2.3
Or see this region's nucleotide sequence