Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00145 and MIT1002_00146 are separated by 94 nucleotides MIT1002_00146 and MIT1002_00147 are separated by 105 nucleotides MIT1002_00147 and MIT1002_00148 are separated by 85 nucleotides
MIT1002_00145: MIT1002_00145 - Cyclic di-GMP phosphodiesterase Gmr, at 157,528 to 160,368
_00145
MIT1002_00146: MIT1002_00146 - hypothetical protein, at 160,463 to 160,780
_00146
MIT1002_00147: MIT1002_00147 - Glutathione S-transferase GST-6.0, at 160,886 to 161,554
_00147
MIT1002_00148: MIT1002_00148 - ATP-dependent DNA helicase RecQ, at 161,640 to 163,481
_00148
Position (kb) 160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.527 kb on - strand, within MIT1002_00145 at 159.546 kb on + strand, within MIT1002_00145 at 159.546 kb on + strand, within MIT1002_00145 at 159.626 kb on + strand, within MIT1002_00145 at 159.649 kb on + strand, within MIT1002_00145 at 159.654 kb on + strand, within MIT1002_00145 at 159.654 kb on + strand, within MIT1002_00145 at 159.657 kb on - strand, within MIT1002_00145 at 159.657 kb on - strand, within MIT1002_00145 at 159.657 kb on - strand, within MIT1002_00145 at 159.671 kb on + strand, within MIT1002_00145 at 159.679 kb on - strand, within MIT1002_00145 at 159.683 kb on + strand, within MIT1002_00145 at 159.683 kb on + strand, within MIT1002_00145 at 159.689 kb on - strand, within MIT1002_00145 at 159.801 kb on + strand, within MIT1002_00145 at 159.801 kb on + strand, within MIT1002_00145 at 159.854 kb on + strand, within MIT1002_00145 at 159.866 kb on - strand, within MIT1002_00145 at 159.885 kb on - strand, within MIT1002_00145 at 159.887 kb on - strand, within MIT1002_00145 at 159.930 kb on + strand, within MIT1002_00145 at 159.930 kb on + strand, within MIT1002_00145 at 159.930 kb on + strand, within MIT1002_00145 at 159.937 kb on - strand, within MIT1002_00145 at 159.938 kb on - strand, within MIT1002_00145 at 159.938 kb on - strand, within MIT1002_00145 at 159.993 kb on - strand, within MIT1002_00145 at 160.041 kb on - strand, within MIT1002_00145 at 160.084 kb on - strand, within MIT1002_00145 at 160.084 kb on - strand, within MIT1002_00145 at 160.114 kb on + strand at 160.119 kb on + strand at 160.124 kb on + strand at 160.130 kb on - strand at 160.132 kb on - strand at 160.223 kb on + strand at 160.223 kb on + strand at 160.226 kb on - strand at 160.231 kb on - strand at 160.353 kb on + strand at 160.454 kb on + strand at 160.454 kb on + strand at 160.462 kb on - strand at 160.462 kb on - strand at 160.496 kb on - strand, within MIT1002_00146 at 160.637 kb on - strand, within MIT1002_00146 at 160.674 kb on - strand, within MIT1002_00146 at 160.674 kb on - strand, within MIT1002_00146 at 160.678 kb on + strand, within MIT1002_00146 at 160.700 kb on + strand, within MIT1002_00146 at 160.702 kb on - strand, within MIT1002_00146 at 160.725 kb on - strand, within MIT1002_00146 at 160.803 kb on + strand at 160.828 kb on + strand at 160.830 kb on + strand at 160.832 kb on + strand at 160.838 kb on - strand at 160.954 kb on - strand, within MIT1002_00147 at 161.093 kb on + strand, within MIT1002_00147 at 161.093 kb on + strand, within MIT1002_00147 at 161.101 kb on - strand, within MIT1002_00147 at 161.146 kb on - strand, within MIT1002_00147 at 161.154 kb on + strand, within MIT1002_00147 at 161.220 kb on + strand, within MIT1002_00147 at 161.220 kb on + strand, within MIT1002_00147 at 161.346 kb on + strand, within MIT1002_00147 at 161.354 kb on - strand, within MIT1002_00147 at 161.453 kb on + strand, within MIT1002_00147 at 161.479 kb on - strand, within MIT1002_00147 at 161.509 kb on + strand at 161.509 kb on + strand at 161.509 kb on + strand at 161.509 kb on - strand at 161.556 kb on - strand at 161.556 kb on - strand at 161.578 kb on + strand at 161.586 kb on - strand at 161.636 kb on + strand at 161.675 kb on + strand at 161.737 kb on + strand at 161.739 kb on + strand at 161.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 159,527 - MIT1002_00145 0.70 -1.5 159,546 + MIT1002_00145 0.71 -0.8 159,546 + MIT1002_00145 0.71 +0.2 159,626 + MIT1002_00145 0.74 -3.5 159,649 + MIT1002_00145 0.75 -0.2 159,654 + MIT1002_00145 0.75 +0.2 159,654 + MIT1002_00145 0.75 -0.8 159,657 - MIT1002_00145 0.75 -0.6 159,657 - MIT1002_00145 0.75 -1.4 159,657 - MIT1002_00145 0.75 +0.6 159,671 + MIT1002_00145 0.75 -2.0 159,679 - MIT1002_00145 0.76 -1.3 159,683 + MIT1002_00145 0.76 -0.4 159,683 + MIT1002_00145 0.76 -0.2 159,689 - MIT1002_00145 0.76 -0.3 159,801 + MIT1002_00145 0.80 +0.6 159,801 + MIT1002_00145 0.80 +0.6 159,854 + MIT1002_00145 0.82 -0.5 159,866 - MIT1002_00145 0.82 +0.0 159,885 - MIT1002_00145 0.83 -0.3 159,887 - MIT1002_00145 0.83 -0.5 159,930 + MIT1002_00145 0.85 -0.4 159,930 + MIT1002_00145 0.85 -0.0 159,930 + MIT1002_00145 0.85 -0.4 159,937 - MIT1002_00145 0.85 -1.0 159,938 - MIT1002_00145 0.85 +0.4 159,938 - MIT1002_00145 0.85 +1.1 159,993 - MIT1002_00145 0.87 +0.4 160,041 - MIT1002_00145 0.88 -0.4 160,084 - MIT1002_00145 0.90 -0.5 160,084 - MIT1002_00145 0.90 +0.2 160,114 + +0.8 160,119 + +0.6 160,124 + +0.3 160,130 - +1.2 160,132 - -0.7 160,223 + -0.6 160,223 + +0.1 160,226 - +0.8 160,231 - -0.8 160,353 + -0.3 160,454 + -0.0 160,454 + -1.5 160,462 - -0.6 160,462 - +0.3 160,496 - MIT1002_00146 0.10 -0.8 160,637 - MIT1002_00146 0.55 -0.9 160,674 - MIT1002_00146 0.66 -1.4 160,674 - MIT1002_00146 0.66 -0.8 160,678 + MIT1002_00146 0.68 -0.8 160,700 + MIT1002_00146 0.75 +0.6 160,702 - MIT1002_00146 0.75 -1.3 160,725 - MIT1002_00146 0.82 -1.1 160,803 + +1.1 160,828 + +0.0 160,830 + +0.0 160,832 + -0.4 160,838 - +2.5 160,954 - MIT1002_00147 0.10 -0.9 161,093 + MIT1002_00147 0.31 -0.3 161,093 + MIT1002_00147 0.31 +0.3 161,101 - MIT1002_00147 0.32 +0.1 161,146 - MIT1002_00147 0.39 +0.5 161,154 + MIT1002_00147 0.40 -1.5 161,220 + MIT1002_00147 0.50 -0.2 161,220 + MIT1002_00147 0.50 -0.6 161,346 + MIT1002_00147 0.69 +0.4 161,354 - MIT1002_00147 0.70 +0.9 161,453 + MIT1002_00147 0.85 +1.1 161,479 - MIT1002_00147 0.89 +0.4 161,509 + +0.3 161,509 + +1.3 161,509 + -0.4 161,509 - +0.6 161,556 - +1.2 161,556 - +0.4 161,578 + +0.4 161,586 - +0.1 161,636 + -1.3 161,675 + +0.3 161,737 + -1.6 161,739 + +0.1 161,745 - -0.8
Or see this region's nucleotide sequence