Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00085

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
91,034	+		MIT1002_00084	0.63	+0.5
91,120	+		MIT1002_00084	0.67	-3.4
91,167	+		MIT1002_00084	0.69	-1.2
91,177	+		MIT1002_00084	0.70	-0.5
91,177	+		MIT1002_00084	0.70	-1.0
91,180	-		MIT1002_00084	0.70	+0.6
91,185	-		MIT1002_00084	0.70	-0.2
91,185	-		MIT1002_00084	0.70	-2.3
91,185	-		MIT1002_00084	0.70	-0.3
91,195	-		MIT1002_00084	0.71	+0.2
91,209	+		MIT1002_00084	0.71	-0.3
91,213	-		MIT1002_00084	0.72	+0.0
91,213	-		MIT1002_00084	0.72	+0.8
91,225	+		MIT1002_00084	0.72	-0.1
91,225	+		MIT1002_00084	0.72	-0.8
91,242	+		MIT1002_00084	0.73	+0.0
91,242	+		MIT1002_00084	0.73	+0.1
91,262	+		MIT1002_00084	0.74	-1.3
91,269	+		MIT1002_00084	0.74	-1.9
91,277	-		MIT1002_00084	0.75	+0.1
91,363	-		MIT1002_00084	0.79	+1.2
91,373	-		MIT1002_00084	0.79	-0.3
91,466	-		MIT1002_00084	0.84	-0.7
91,473	+		MIT1002_00084	0.84	-0.7
91,498	+		MIT1002_00084	0.85	+0.2
91,503	+		MIT1002_00084	0.86	-0.5
91,505	+		MIT1002_00084	0.86	-1.8
91,505	+		MIT1002_00084	0.86	-0.3
91,505	+		MIT1002_00084	0.86	+0.5
91,513	-		MIT1002_00084	0.86	+0.3
91,531	+		MIT1002_00084	0.87	+1.5
91,541	+		MIT1002_00084	0.87	+0.2
91,590	+		MIT1002_00084	0.90	+0.1
91,596	-				-0.1
91,619	+				-0.2
91,632	-				-0.1
91,632	-				-0.1
91,634	-				-0.0
91,634	-				-0.0
91,752	+				-0.2
91,779	+				+0.3
91,779	+				-0.1
91,950	-				+0.6
91,982	+				+2.0
92,007	+				-0.3
92,015	-				-1.1
92,021	+				-0.7
92,021	+				-1.2
92,021	+				+0.4
92,060	+		MIT1002_00085	0.17	-0.8
92,128	-		MIT1002_00085	0.30	-0.3
92,165	+		MIT1002_00085	0.37	+0.2
92,165	+		MIT1002_00085	0.37	-0.1
92,183	-		MIT1002_00085	0.40	+0.4
92,265	+		MIT1002_00085	0.56	-0.7
92,309	-		MIT1002_00085	0.64	-2.9
92,376	-		MIT1002_00085	0.77	+1.5
92,383	-		MIT1002_00085	0.79	-1.7
92,426	-		MIT1002_00085	0.87	-1.2
92,454	+				+0.0
92,462	-				+0.7
92,462	-				+0.8
92,462	-				+0.4
92,462	-				+0.5
92,499	+				+0.1
92,499	+				-0.1
92,499	+				+1.0
92,499	+				-0.0
92,499	+				-1.6
92,499	+				-0.4
92,499	+				+1.1
92,499	+				-0.4
92,499	+				+0.2
92,507	-				-0.6
92,507	-				+0.0
92,507	-				-2.5
92,507	-				+0.4
92,507	-				-0.3
92,507	-				-2.0
92,507	-				-0.7
92,512	+				-1.0
92,512	+				+2.0
92,512	+				+0.6
92,512	+				-0.8
92,520	-				+1.2
92,520	-				-0.6
92,520	-				+1.9
92,520	-				+0.4
92,624	-				+0.4
92,626	+				-0.1
92,626	+				-0.9
92,717	+		MIT1002_00086	0.12	+0.8
92,988	+		MIT1002_00086	0.34	-0.5
92,996	-		MIT1002_00086	0.35	-0.4
93,021	-		MIT1002_00086	0.37	+2.0
93,033	-		MIT1002_00086	0.38	+1.6
93,051	-		MIT1002_00086	0.39	-0.7
93,058	-		MIT1002_00086	0.40	+0.3
93,100	+		MIT1002_00086	0.43	-0.8
93,161	+		MIT1002_00086	0.48	-0.5
93,161	+		MIT1002_00086	0.48	+0.5
93,187	-		MIT1002_00086	0.51	+2.2
93,187	-		MIT1002_00086	0.51	+0.1
93,212	+		MIT1002_00086	0.53	-0.2
93,232	-		MIT1002_00086	0.54	+0.2
93,245	+		MIT1002_00086	0.55	+1.1
93,253	-		MIT1002_00086	0.56	-1.2
93,253	-		MIT1002_00086	0.56	+0.0
93,253	-		MIT1002_00086	0.56	-0.1
93,255	+		MIT1002_00086	0.56	-0.1
93,256	+		MIT1002_00086	0.56	-1.0
93,256	+		MIT1002_00086	0.56	+0.4
93,256	+		MIT1002_00086	0.56	-1.3
93,256	+		MIT1002_00086	0.56	-1.3
93,256	+		MIT1002_00086	0.56	-2.1
93,264	-		MIT1002_00086	0.57	-1.1
93,264	-		MIT1002_00086	0.57	-0.2
93,264	-		MIT1002_00086	0.57	+0.3
93,305	-		MIT1002_00086	0.60	+0.2
93,353	+		MIT1002_00086	0.64	+0.4
93,353	+		MIT1002_00086	0.64	+1.5
93,393	-		MIT1002_00086	0.67	+1.3