Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18425

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18415 and LRK53_RS18420 are separated by 137 nucleotidesLRK53_RS18420 and LRK53_RS18425 are separated by 101 nucleotidesLRK53_RS18425 and LRK53_RS18430 are separated by 97 nucleotides LRK53_RS18415: LRK53_RS18415 - hypothetical protein, at 58,590 to 59,072 _RS18415 LRK53_RS18420: LRK53_RS18420 - hypothetical protein, at 59,210 to 59,743 _RS18420 LRK53_RS18425: LRK53_RS18425 - hypothetical protein, at 59,845 to 60,381 _RS18425 LRK53_RS18430: LRK53_RS18430 - hypothetical protein, at 60,479 to 61,420 _RS18430 Position (kb) 59 60 61Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 59.093 kb on + strandat 59.093 kb on + strandat 59.094 kb on - strandat 59.094 kb on - strandat 59.195 kb on + strandat 59.195 kb on + strandat 59.195 kb on + strandat 59.196 kb on - strandat 59.196 kb on - strandat 59.196 kb on - strandat 59.196 kb on - strandat 59.196 kb on - strandat 59.224 kb on + strandat 59.224 kb on + strandat 59.224 kb on + strandat 59.224 kb on + strandat 59.224 kb on + strandat 59.225 kb on - strandat 59.288 kb on + strand, within LRK53_RS18420at 59.499 kb on - strand, within LRK53_RS18420at 59.570 kb on + strand, within LRK53_RS18420at 59.654 kb on + strand, within LRK53_RS18420at 59.654 kb on + strand, within LRK53_RS18420at 59.655 kb on - strand, within LRK53_RS18420at 59.655 kb on - strand, within LRK53_RS18420at 59.655 kb on - strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.656 kb on + strand, within LRK53_RS18420at 59.657 kb on - strand, within LRK53_RS18420at 59.657 kb on - strand, within LRK53_RS18420at 59.657 kb on - strand, within LRK53_RS18420at 59.657 kb on - strand, within LRK53_RS18420at 59.694 kb on + strandat 59.694 kb on + strandat 59.694 kb on + strandat 59.694 kb on + strandat 59.695 kb on - strandat 59.695 kb on - strandat 59.695 kb on - strandat 59.695 kb on - strandat 59.695 kb on - strandat 59.695 kb on - strandat 59.773 kb on - strandat 59.955 kb on + strand, within LRK53_RS18425at 59.955 kb on + strand, within LRK53_RS18425at 59.956 kb on - strand, within LRK53_RS18425at 59.956 kb on - strand, within LRK53_RS18425at 59.978 kb on + strand, within LRK53_RS18425at 60.005 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.033 kb on + strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.034 kb on - strand, within LRK53_RS18425at 60.425 kb on + strandat 60.426 kb on - strandat 60.593 kb on + strand, within LRK53_RS18430at 60.593 kb on + strand, within LRK53_RS18430at 60.594 kb on - strand, within LRK53_RS18430at 60.594 kb on - strand, within LRK53_RS18430at 60.671 kb on + strand, within LRK53_RS18430at 60.671 kb on + strand, within LRK53_RS18430at 60.671 kb on + strand, within LRK53_RS18430at 60.672 kb on - strand, within LRK53_RS18430at 60.897 kb on - strand, within LRK53_RS18430at 61.076 kb on + strand, within LRK53_RS18430at 61.206 kb on + strand, within LRK53_RS18430at 61.206 kb on + strand, within LRK53_RS18430at 61.250 kb on + strand, within LRK53_RS18430at 61.250 kb on + strand, within LRK53_RS18430at 61.251 kb on - strand, within LRK53_RS18430at 61.251 kb on - strand, within LRK53_RS18430at 61.251 kb on - strand, within LRK53_RS18430at 61.251 kb on - strand, within LRK53_RS18430

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM
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59,093 + -1.3
59,093 + +0.5
59,094 - -0.5
59,094 - -0.3
59,195 + -2.1
59,195 + +1.3
59,195 + -1.1
59,196 - -0.5
59,196 - -2.1
59,196 - -2.1
59,196 - -0.9
59,196 - -0.5
59,224 + -0.4
59,224 + -1.9
59,224 + -1.0
59,224 + -1.7
59,224 + -0.8
59,225 - +1.7
59,288 + LRK53_RS18420 0.15 -0.4
59,499 - LRK53_RS18420 0.54 -0.1
59,570 + LRK53_RS18420 0.67 -0.9
59,654 + LRK53_RS18420 0.83 -0.0
59,654 + LRK53_RS18420 0.83 -0.1
59,655 - LRK53_RS18420 0.83 +0.1
59,655 - LRK53_RS18420 0.83 -0.2
59,655 - LRK53_RS18420 0.83 -0.3
59,656 + LRK53_RS18420 0.84 -1.7
59,656 + LRK53_RS18420 0.84 -1.3
59,656 + LRK53_RS18420 0.84 +1.7
59,656 + LRK53_RS18420 0.84 -0.3
59,656 + LRK53_RS18420 0.84 -1.9
59,656 + LRK53_RS18420 0.84 +0.2
59,656 + LRK53_RS18420 0.84 +1.5
59,656 + LRK53_RS18420 0.84 -1.5
59,657 - LRK53_RS18420 0.84 +0.1
59,657 - LRK53_RS18420 0.84 -0.0
59,657 - LRK53_RS18420 0.84 -3.8
59,657 - LRK53_RS18420 0.84 -2.3
59,694 + -1.3
59,694 + +1.1
59,694 + +1.8
59,694 + -1.5
59,695 - -2.7
59,695 - -0.5
59,695 - -0.9
59,695 - -1.9
59,695 - +0.9
59,695 - -0.9
59,773 - -0.2
59,955 + LRK53_RS18425 0.20 +0.1
59,955 + LRK53_RS18425 0.20 -0.8
59,956 - LRK53_RS18425 0.21 -2.5
59,956 - LRK53_RS18425 0.21 -1.1
59,978 + LRK53_RS18425 0.25 -2.1
60,005 + LRK53_RS18425 0.30 -1.2
60,033 + LRK53_RS18425 0.35 -2.6
60,033 + LRK53_RS18425 0.35 +1.5
60,033 + LRK53_RS18425 0.35 -1.9
60,033 + LRK53_RS18425 0.35 -0.6
60,033 + LRK53_RS18425 0.35 -0.1
60,033 + LRK53_RS18425 0.35 -1.1
60,033 + LRK53_RS18425 0.35 -1.1
60,033 + LRK53_RS18425 0.35 -1.0
60,033 + LRK53_RS18425 0.35 -2.7
60,033 + LRK53_RS18425 0.35 -0.3
60,033 + LRK53_RS18425 0.35 +0.6
60,033 + LRK53_RS18425 0.35 +0.0
60,033 + LRK53_RS18425 0.35 -0.3
60,034 - LRK53_RS18425 0.35 -1.4
60,034 - LRK53_RS18425 0.35 +1.3
60,034 - LRK53_RS18425 0.35 -1.5
60,034 - LRK53_RS18425 0.35 -2.0
60,034 - LRK53_RS18425 0.35 -2.4
60,034 - LRK53_RS18425 0.35 -1.7
60,034 - LRK53_RS18425 0.35 -1.1
60,034 - LRK53_RS18425 0.35 -2.0
60,034 - LRK53_RS18425 0.35 -1.0
60,034 - LRK53_RS18425 0.35 -1.7
60,034 - LRK53_RS18425 0.35 -0.5
60,425 + -0.6
60,426 - -0.1
60,593 + LRK53_RS18430 0.12 +0.2
60,593 + LRK53_RS18430 0.12 -0.5
60,594 - LRK53_RS18430 0.12 -1.5
60,594 - LRK53_RS18430 0.12 -0.0
60,671 + LRK53_RS18430 0.20 +1.5
60,671 + LRK53_RS18430 0.20 -2.0
60,671 + LRK53_RS18430 0.20 -1.3
60,672 - LRK53_RS18430 0.20 -0.8
60,897 - LRK53_RS18430 0.44 -2.5
61,076 + LRK53_RS18430 0.63 +0.1
61,206 + LRK53_RS18430 0.77 +1.5
61,206 + LRK53_RS18430 0.77 -1.5
61,250 + LRK53_RS18430 0.82 -0.3
61,250 + LRK53_RS18430 0.82 -2.5
61,251 - LRK53_RS18430 0.82 -0.5
61,251 - LRK53_RS18430 0.82 -1.1
61,251 - LRK53_RS18430 0.82 +0.5
61,251 - LRK53_RS18430 0.82 -0.8

Or see this region's nucleotide sequence