Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11730 and LRK53_RS11735 are separated by 63 nucleotides LRK53_RS11735 and LRK53_RS11740 are separated by 112 nucleotides LRK53_RS11740 and LRK53_RS11745 are separated by 139 nucleotides
LRK53_RS11730: LRK53_RS11730 - NADH-quinone oxidoreductase subunit C, at 2,613,204 to 2,614,748
_RS11730
LRK53_RS11735: LRK53_RS11735 - NADH-quinone oxidoreductase subunit NuoB, at 2,614,812 to 2,615,267
_RS11735
LRK53_RS11740: LRK53_RS11740 - outer membrane lipoprotein chaperone LolA, at 2,615,380 to 2,616,045
_RS11740
LRK53_RS11745: LRK53_RS11745 - DNA translocase FtsK, at 2,616,185 to 2,618,509
_RS11745
Position (kb)
2614
2615
2616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2613.851 kb on + strand, within LRK53_RS11730 at 2613.851 kb on + strand, within LRK53_RS11730 at 2613.851 kb on + strand, within LRK53_RS11730 at 2613.851 kb on + strand, within LRK53_RS11730 at 2613.851 kb on + strand, within LRK53_RS11730 at 2613.851 kb on + strand, within LRK53_RS11730 at 2613.852 kb on - strand, within LRK53_RS11730 at 2613.852 kb on - strand, within LRK53_RS11730 at 2613.852 kb on - strand, within LRK53_RS11730 at 2613.888 kb on + strand, within LRK53_RS11730 at 2613.888 kb on + strand, within LRK53_RS11730 at 2614.101 kb on + strand, within LRK53_RS11730 at 2614.101 kb on + strand, within LRK53_RS11730 at 2614.101 kb on + strand, within LRK53_RS11730 at 2614.101 kb on + strand, within LRK53_RS11730 at 2614.101 kb on + strand, within LRK53_RS11730 at 2614.102 kb on - strand, within LRK53_RS11730 at 2614.102 kb on - strand, within LRK53_RS11730 at 2614.102 kb on - strand, within LRK53_RS11730 at 2614.102 kb on - strand, within LRK53_RS11730 at 2614.102 kb on - strand, within LRK53_RS11730 at 2614.221 kb on + strand, within LRK53_RS11730 at 2614.221 kb on + strand, within LRK53_RS11730 at 2614.221 kb on + strand, within LRK53_RS11730 at 2614.222 kb on - strand, within LRK53_RS11730 at 2614.222 kb on - strand, within LRK53_RS11730 at 2614.222 kb on - strand, within LRK53_RS11730 at 2614.222 kb on - strand, within LRK53_RS11730 at 2614.222 kb on - strand, within LRK53_RS11730 at 2614.222 kb on - strand, within LRK53_RS11730 at 2614.303 kb on + strand, within LRK53_RS11730 at 2614.368 kb on + strand, within LRK53_RS11730 at 2614.369 kb on - strand, within LRK53_RS11730 at 2614.369 kb on - strand, within LRK53_RS11730 at 2614.369 kb on - strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.432 kb on + strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.433 kb on - strand, within LRK53_RS11730 at 2614.728 kb on + strand at 2614.729 kb on - strand at 2614.747 kb on - strand at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.953 kb on + strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.954 kb on - strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.956 kb on + strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2614.957 kb on - strand, within LRK53_RS11735 at 2615.042 kb on + strand, within LRK53_RS11735 at 2615.042 kb on + strand, within LRK53_RS11735 at 2615.042 kb on + strand, within LRK53_RS11735 at 2615.043 kb on - strand, within LRK53_RS11735 at 2615.043 kb on - strand, within LRK53_RS11735 at 2615.043 kb on - strand, within LRK53_RS11735 at 2615.043 kb on - strand, within LRK53_RS11735 at 2615.043 kb on - strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.067 kb on + strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.068 kb on - strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.145 kb on + strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.146 kb on - strand, within LRK53_RS11735 at 2615.245 kb on + strand at 2615.245 kb on + strand at 2615.246 kb on - strand at 2615.246 kb on - strand at 2615.246 kb on - strand at 2615.246 kb on - strand at 2615.246 kb on - strand at 2615.246 kb on - strand at 2615.246 kb on - strand at 2615.265 kb on + strand at 2615.265 kb on + strand at 2615.265 kb on + strand at 2615.265 kb on + strand at 2615.265 kb on + strand at 2615.265 kb on + strand at 2615.265 kb on + strand at 2615.265 kb on + strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.266 kb on - strand at 2615.398 kb on + strand at 2615.398 kb on + strand at 2615.398 kb on + strand at 2615.398 kb on + strand at 2615.398 kb on + strand at 2615.398 kb on + strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2615.399 kb on - strand at 2616.106 kb on + strand at 2616.106 kb on + strand at 2616.106 kb on + strand at 2616.107 kb on - strand at 2616.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 2,613,851 + LRK53_RS11730 0.42 -1.0 2,613,851 + LRK53_RS11730 0.42 -0.5 2,613,851 + LRK53_RS11730 0.42 -0.5 2,613,851 + LRK53_RS11730 0.42 -0.3 2,613,851 + LRK53_RS11730 0.42 -1.5 2,613,851 + LRK53_RS11730 0.42 -0.9 2,613,852 - LRK53_RS11730 0.42 -0.9 2,613,852 - LRK53_RS11730 0.42 -2.4 2,613,852 - LRK53_RS11730 0.42 -1.2 2,613,888 + LRK53_RS11730 0.44 -1.7 2,613,888 + LRK53_RS11730 0.44 -2.2 2,614,101 + LRK53_RS11730 0.58 -1.9 2,614,101 + LRK53_RS11730 0.58 +0.2 2,614,101 + LRK53_RS11730 0.58 -0.0 2,614,101 + LRK53_RS11730 0.58 -1.9 2,614,101 + LRK53_RS11730 0.58 -1.5 2,614,102 - LRK53_RS11730 0.58 -2.7 2,614,102 - LRK53_RS11730 0.58 +0.8 2,614,102 - LRK53_RS11730 0.58 -3.4 2,614,102 - LRK53_RS11730 0.58 +0.5 2,614,102 - LRK53_RS11730 0.58 -0.4 2,614,221 + LRK53_RS11730 0.66 -0.8 2,614,221 + LRK53_RS11730 0.66 +0.3 2,614,221 + LRK53_RS11730 0.66 -1.4 2,614,222 - LRK53_RS11730 0.66 +0.7 2,614,222 - LRK53_RS11730 0.66 -0.6 2,614,222 - LRK53_RS11730 0.66 -1.4 2,614,222 - LRK53_RS11730 0.66 +0.3 2,614,222 - LRK53_RS11730 0.66 -0.9 2,614,222 - LRK53_RS11730 0.66 +1.5 2,614,303 + LRK53_RS11730 0.71 -1.3 2,614,368 + LRK53_RS11730 0.75 -0.6 2,614,369 - LRK53_RS11730 0.75 +0.3 2,614,369 - LRK53_RS11730 0.75 -0.6 2,614,369 - LRK53_RS11730 0.75 +2.9 2,614,432 + LRK53_RS11730 0.79 -1.4 2,614,432 + LRK53_RS11730 0.79 -1.5 2,614,432 + LRK53_RS11730 0.79 -1.3 2,614,432 + LRK53_RS11730 0.79 -0.2 2,614,432 + LRK53_RS11730 0.79 -1.0 2,614,432 + LRK53_RS11730 0.79 -3.0 2,614,432 + LRK53_RS11730 0.79 +0.2 2,614,432 + LRK53_RS11730 0.79 -1.4 2,614,433 - LRK53_RS11730 0.80 -3.4 2,614,433 - LRK53_RS11730 0.80 -0.5 2,614,433 - LRK53_RS11730 0.80 +0.2 2,614,433 - LRK53_RS11730 0.80 -1.9 2,614,433 - LRK53_RS11730 0.80 +1.4 2,614,433 - LRK53_RS11730 0.80 -2.4 2,614,433 - LRK53_RS11730 0.80 +1.0 2,614,433 - LRK53_RS11730 0.80 +1.4 2,614,433 - LRK53_RS11730 0.80 +0.3 2,614,728 + +0.5 2,614,729 - -0.5 2,614,747 - +0.2 2,614,953 + LRK53_RS11735 0.31 -1.0 2,614,953 + LRK53_RS11735 0.31 +1.7 2,614,953 + LRK53_RS11735 0.31 -2.2 2,614,953 + LRK53_RS11735 0.31 -3.0 2,614,953 + LRK53_RS11735 0.31 -0.3 2,614,953 + LRK53_RS11735 0.31 -1.1 2,614,953 + LRK53_RS11735 0.31 -0.2 2,614,953 + LRK53_RS11735 0.31 -1.3 2,614,953 + LRK53_RS11735 0.31 -1.2 2,614,954 - LRK53_RS11735 0.31 -0.0 2,614,954 - LRK53_RS11735 0.31 +0.1 2,614,954 - LRK53_RS11735 0.31 -1.3 2,614,954 - LRK53_RS11735 0.31 -2.2 2,614,954 - LRK53_RS11735 0.31 -0.7 2,614,954 - LRK53_RS11735 0.31 -0.2 2,614,954 - LRK53_RS11735 0.31 -0.5 2,614,954 - LRK53_RS11735 0.31 -1.4 2,614,954 - LRK53_RS11735 0.31 -0.1 2,614,954 - LRK53_RS11735 0.31 -0.3 2,614,954 - LRK53_RS11735 0.31 -2.5 2,614,954 - LRK53_RS11735 0.31 +0.1 2,614,956 + LRK53_RS11735 0.32 -1.3 2,614,956 + LRK53_RS11735 0.32 -0.8 2,614,956 + LRK53_RS11735 0.32 -2.3 2,614,956 + LRK53_RS11735 0.32 -3.2 2,614,956 + LRK53_RS11735 0.32 -0.3 2,614,956 + LRK53_RS11735 0.32 +0.0 2,614,956 + LRK53_RS11735 0.32 -2.3 2,614,956 + LRK53_RS11735 0.32 +0.4 2,614,956 + LRK53_RS11735 0.32 +0.0 2,614,956 + LRK53_RS11735 0.32 -2.0 2,614,957 - LRK53_RS11735 0.32 +0.0 2,614,957 - LRK53_RS11735 0.32 -1.9 2,614,957 - LRK53_RS11735 0.32 -0.3 2,614,957 - LRK53_RS11735 0.32 -0.0 2,614,957 - LRK53_RS11735 0.32 -1.5 2,614,957 - LRK53_RS11735 0.32 -1.0 2,614,957 - LRK53_RS11735 0.32 -3.3 2,614,957 - LRK53_RS11735 0.32 -0.9 2,614,957 - LRK53_RS11735 0.32 +0.8 2,614,957 - LRK53_RS11735 0.32 -0.3 2,614,957 - LRK53_RS11735 0.32 +0.2 2,614,957 - LRK53_RS11735 0.32 -0.7 2,614,957 - LRK53_RS11735 0.32 -2.7 2,615,042 + LRK53_RS11735 0.50 -1.0 2,615,042 + LRK53_RS11735 0.50 -1.4 2,615,042 + LRK53_RS11735 0.50 -0.5 2,615,043 - LRK53_RS11735 0.51 -1.8 2,615,043 - LRK53_RS11735 0.51 -0.6 2,615,043 - LRK53_RS11735 0.51 -0.7 2,615,043 - LRK53_RS11735 0.51 -0.6 2,615,043 - LRK53_RS11735 0.51 +0.2 2,615,067 + LRK53_RS11735 0.56 +0.5 2,615,067 + LRK53_RS11735 0.56 +0.3 2,615,067 + LRK53_RS11735 0.56 -0.3 2,615,067 + LRK53_RS11735 0.56 -0.2 2,615,067 + LRK53_RS11735 0.56 -1.2 2,615,067 + LRK53_RS11735 0.56 +0.1 2,615,067 + LRK53_RS11735 0.56 -0.5 2,615,067 + LRK53_RS11735 0.56 +0.5 2,615,067 + LRK53_RS11735 0.56 -0.8 2,615,068 - LRK53_RS11735 0.56 -1.0 2,615,068 - LRK53_RS11735 0.56 -1.1 2,615,068 - LRK53_RS11735 0.56 +0.3 2,615,068 - LRK53_RS11735 0.56 -2.3 2,615,068 - LRK53_RS11735 0.56 -1.0 2,615,068 - LRK53_RS11735 0.56 -0.5 2,615,068 - LRK53_RS11735 0.56 -1.0 2,615,068 - LRK53_RS11735 0.56 -0.3 2,615,068 - LRK53_RS11735 0.56 -0.9 2,615,068 - LRK53_RS11735 0.56 -0.5 2,615,068 - LRK53_RS11735 0.56 -0.0 2,615,068 - LRK53_RS11735 0.56 -0.3 2,615,068 - LRK53_RS11735 0.56 -0.5 2,615,068 - LRK53_RS11735 0.56 -1.0 2,615,145 + LRK53_RS11735 0.73 +0.7 2,615,145 + LRK53_RS11735 0.73 -0.9 2,615,145 + LRK53_RS11735 0.73 +1.4 2,615,145 + LRK53_RS11735 0.73 +0.0 2,615,145 + LRK53_RS11735 0.73 -0.6 2,615,145 + LRK53_RS11735 0.73 -1.7 2,615,145 + LRK53_RS11735 0.73 -0.4 2,615,145 + LRK53_RS11735 0.73 -0.8 2,615,145 + LRK53_RS11735 0.73 -0.6 2,615,145 + LRK53_RS11735 0.73 -1.0 2,615,145 + LRK53_RS11735 0.73 -1.3 2,615,145 + LRK53_RS11735 0.73 -0.8 2,615,145 + LRK53_RS11735 0.73 +0.2 2,615,145 + LRK53_RS11735 0.73 -0.6 2,615,146 - LRK53_RS11735 0.73 -0.4 2,615,146 - LRK53_RS11735 0.73 -0.7 2,615,146 - LRK53_RS11735 0.73 -0.4 2,615,146 - LRK53_RS11735 0.73 -0.0 2,615,146 - LRK53_RS11735 0.73 +0.1 2,615,146 - LRK53_RS11735 0.73 +0.8 2,615,146 - LRK53_RS11735 0.73 -1.7 2,615,146 - LRK53_RS11735 0.73 -1.2 2,615,146 - LRK53_RS11735 0.73 -0.2 2,615,146 - LRK53_RS11735 0.73 -0.9 2,615,146 - LRK53_RS11735 0.73 -2.0 2,615,146 - LRK53_RS11735 0.73 -0.9 2,615,146 - LRK53_RS11735 0.73 +1.9 2,615,146 - LRK53_RS11735 0.73 -1.6 2,615,245 + -1.0 2,615,245 + -1.0 2,615,246 - -3.4 2,615,246 - -2.8 2,615,246 - +1.1 2,615,246 - -1.4 2,615,246 - -1.7 2,615,246 - +1.0 2,615,246 - -0.0 2,615,265 + -1.4 2,615,265 + -0.5 2,615,265 + +0.6 2,615,265 + -0.8 2,615,265 + -0.5 2,615,265 + -1.2 2,615,265 + +0.2 2,615,265 + +1.5 2,615,266 - -1.8 2,615,266 - -0.3 2,615,266 - -2.4 2,615,266 - -1.7 2,615,266 - -0.8 2,615,266 - -0.5 2,615,266 - -0.3 2,615,266 - +0.4 2,615,266 - -2.2 2,615,266 - -1.5 2,615,398 + -0.2 2,615,398 + -0.1 2,615,398 + -3.4 2,615,398 + -0.2 2,615,398 + -1.4 2,615,398 + +0.3 2,615,399 - -2.2 2,615,399 - +0.5 2,615,399 - -0.0 2,615,399 - -0.3 2,615,399 - -0.8 2,615,399 - -0.4 2,615,399 - -0.8 2,615,399 - -0.5 2,615,399 - -1.0 2,615,399 - -1.1 2,615,399 - +1.3 2,616,106 + -0.6 2,616,106 + +3.2 2,616,106 + -1.2 2,616,107 - +0.1 2,616,107 - -0.6
Or see this region's nucleotide sequence