Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11735

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11730 and LRK53_RS11735 are separated by 63 nucleotidesLRK53_RS11735 and LRK53_RS11740 are separated by 112 nucleotidesLRK53_RS11740 and LRK53_RS11745 are separated by 139 nucleotides LRK53_RS11730: LRK53_RS11730 - NADH-quinone oxidoreductase subunit C, at 2,613,204 to 2,614,748 _RS11730 LRK53_RS11735: LRK53_RS11735 - NADH-quinone oxidoreductase subunit NuoB, at 2,614,812 to 2,615,267 _RS11735 LRK53_RS11740: LRK53_RS11740 - outer membrane lipoprotein chaperone LolA, at 2,615,380 to 2,616,045 _RS11740 LRK53_RS11745: LRK53_RS11745 - DNA translocase FtsK, at 2,616,185 to 2,618,509 _RS11745 Position (kb) 2614 2615 2616Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2613.851 kb on + strand, within LRK53_RS11730at 2613.851 kb on + strand, within LRK53_RS11730at 2613.851 kb on + strand, within LRK53_RS11730at 2613.851 kb on + strand, within LRK53_RS11730at 2613.851 kb on + strand, within LRK53_RS11730at 2613.851 kb on + strand, within LRK53_RS11730at 2613.852 kb on - strand, within LRK53_RS11730at 2613.852 kb on - strand, within LRK53_RS11730at 2613.852 kb on - strand, within LRK53_RS11730at 2613.888 kb on + strand, within LRK53_RS11730at 2613.888 kb on + strand, within LRK53_RS11730at 2614.101 kb on + strand, within LRK53_RS11730at 2614.101 kb on + strand, within LRK53_RS11730at 2614.101 kb on + strand, within LRK53_RS11730at 2614.101 kb on + strand, within LRK53_RS11730at 2614.101 kb on + strand, within LRK53_RS11730at 2614.102 kb on - strand, within LRK53_RS11730at 2614.102 kb on - strand, within LRK53_RS11730at 2614.102 kb on - strand, within LRK53_RS11730at 2614.102 kb on - strand, within LRK53_RS11730at 2614.102 kb on - strand, within LRK53_RS11730at 2614.221 kb on + strand, within LRK53_RS11730at 2614.221 kb on + strand, within LRK53_RS11730at 2614.221 kb on + strand, within LRK53_RS11730at 2614.222 kb on - strand, within LRK53_RS11730at 2614.222 kb on - strand, within LRK53_RS11730at 2614.222 kb on - strand, within LRK53_RS11730at 2614.222 kb on - strand, within LRK53_RS11730at 2614.222 kb on - strand, within LRK53_RS11730at 2614.222 kb on - strand, within LRK53_RS11730at 2614.303 kb on + strand, within LRK53_RS11730at 2614.368 kb on + strand, within LRK53_RS11730at 2614.369 kb on - strand, within LRK53_RS11730at 2614.369 kb on - strand, within LRK53_RS11730at 2614.369 kb on - strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.432 kb on + strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.433 kb on - strand, within LRK53_RS11730at 2614.728 kb on + strandat 2614.729 kb on - strandat 2614.747 kb on - strandat 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.953 kb on + strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.954 kb on - strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.956 kb on + strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2614.957 kb on - strand, within LRK53_RS11735at 2615.042 kb on + strand, within LRK53_RS11735at 2615.042 kb on + strand, within LRK53_RS11735at 2615.042 kb on + strand, within LRK53_RS11735at 2615.043 kb on - strand, within LRK53_RS11735at 2615.043 kb on - strand, within LRK53_RS11735at 2615.043 kb on - strand, within LRK53_RS11735at 2615.043 kb on - strand, within LRK53_RS11735at 2615.043 kb on - strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.067 kb on + strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.068 kb on - strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.145 kb on + strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.146 kb on - strand, within LRK53_RS11735at 2615.245 kb on + strandat 2615.245 kb on + strandat 2615.246 kb on - strandat 2615.246 kb on - strandat 2615.246 kb on - strandat 2615.246 kb on - strandat 2615.246 kb on - strandat 2615.246 kb on - strandat 2615.246 kb on - strandat 2615.265 kb on + strandat 2615.265 kb on + strandat 2615.265 kb on + strandat 2615.265 kb on + strandat 2615.265 kb on + strandat 2615.265 kb on + strandat 2615.265 kb on + strandat 2615.265 kb on + strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.266 kb on - strandat 2615.398 kb on + strandat 2615.398 kb on + strandat 2615.398 kb on + strandat 2615.398 kb on + strandat 2615.398 kb on + strandat 2615.398 kb on + strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2615.399 kb on - strandat 2616.106 kb on + strandat 2616.106 kb on + strandat 2616.106 kb on + strandat 2616.107 kb on - strandat 2616.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM
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2,613,851 + LRK53_RS11730 0.42 -1.0
2,613,851 + LRK53_RS11730 0.42 -0.5
2,613,851 + LRK53_RS11730 0.42 -0.5
2,613,851 + LRK53_RS11730 0.42 -0.3
2,613,851 + LRK53_RS11730 0.42 -1.5
2,613,851 + LRK53_RS11730 0.42 -0.9
2,613,852 - LRK53_RS11730 0.42 -0.9
2,613,852 - LRK53_RS11730 0.42 -2.4
2,613,852 - LRK53_RS11730 0.42 -1.2
2,613,888 + LRK53_RS11730 0.44 -1.7
2,613,888 + LRK53_RS11730 0.44 -2.2
2,614,101 + LRK53_RS11730 0.58 -1.9
2,614,101 + LRK53_RS11730 0.58 +0.2
2,614,101 + LRK53_RS11730 0.58 -0.0
2,614,101 + LRK53_RS11730 0.58 -1.9
2,614,101 + LRK53_RS11730 0.58 -1.5
2,614,102 - LRK53_RS11730 0.58 -2.7
2,614,102 - LRK53_RS11730 0.58 +0.8
2,614,102 - LRK53_RS11730 0.58 -3.4
2,614,102 - LRK53_RS11730 0.58 +0.5
2,614,102 - LRK53_RS11730 0.58 -0.4
2,614,221 + LRK53_RS11730 0.66 -0.8
2,614,221 + LRK53_RS11730 0.66 +0.3
2,614,221 + LRK53_RS11730 0.66 -1.4
2,614,222 - LRK53_RS11730 0.66 +0.7
2,614,222 - LRK53_RS11730 0.66 -0.6
2,614,222 - LRK53_RS11730 0.66 -1.4
2,614,222 - LRK53_RS11730 0.66 +0.3
2,614,222 - LRK53_RS11730 0.66 -0.9
2,614,222 - LRK53_RS11730 0.66 +1.5
2,614,303 + LRK53_RS11730 0.71 -1.3
2,614,368 + LRK53_RS11730 0.75 -0.6
2,614,369 - LRK53_RS11730 0.75 +0.3
2,614,369 - LRK53_RS11730 0.75 -0.6
2,614,369 - LRK53_RS11730 0.75 +2.9
2,614,432 + LRK53_RS11730 0.79 -1.4
2,614,432 + LRK53_RS11730 0.79 -1.5
2,614,432 + LRK53_RS11730 0.79 -1.3
2,614,432 + LRK53_RS11730 0.79 -0.2
2,614,432 + LRK53_RS11730 0.79 -1.0
2,614,432 + LRK53_RS11730 0.79 -3.0
2,614,432 + LRK53_RS11730 0.79 +0.2
2,614,432 + LRK53_RS11730 0.79 -1.4
2,614,433 - LRK53_RS11730 0.80 -3.4
2,614,433 - LRK53_RS11730 0.80 -0.5
2,614,433 - LRK53_RS11730 0.80 +0.2
2,614,433 - LRK53_RS11730 0.80 -1.9
2,614,433 - LRK53_RS11730 0.80 +1.4
2,614,433 - LRK53_RS11730 0.80 -2.4
2,614,433 - LRK53_RS11730 0.80 +1.0
2,614,433 - LRK53_RS11730 0.80 +1.4
2,614,433 - LRK53_RS11730 0.80 +0.3
2,614,728 + +0.5
2,614,729 - -0.5
2,614,747 - +0.2
2,614,953 + LRK53_RS11735 0.31 -1.0
2,614,953 + LRK53_RS11735 0.31 +1.7
2,614,953 + LRK53_RS11735 0.31 -2.2
2,614,953 + LRK53_RS11735 0.31 -3.0
2,614,953 + LRK53_RS11735 0.31 -0.3
2,614,953 + LRK53_RS11735 0.31 -1.1
2,614,953 + LRK53_RS11735 0.31 -0.2
2,614,953 + LRK53_RS11735 0.31 -1.3
2,614,953 + LRK53_RS11735 0.31 -1.2
2,614,954 - LRK53_RS11735 0.31 -0.0
2,614,954 - LRK53_RS11735 0.31 +0.1
2,614,954 - LRK53_RS11735 0.31 -1.3
2,614,954 - LRK53_RS11735 0.31 -2.2
2,614,954 - LRK53_RS11735 0.31 -0.7
2,614,954 - LRK53_RS11735 0.31 -0.2
2,614,954 - LRK53_RS11735 0.31 -0.5
2,614,954 - LRK53_RS11735 0.31 -1.4
2,614,954 - LRK53_RS11735 0.31 -0.1
2,614,954 - LRK53_RS11735 0.31 -0.3
2,614,954 - LRK53_RS11735 0.31 -2.5
2,614,954 - LRK53_RS11735 0.31 +0.1
2,614,956 + LRK53_RS11735 0.32 -1.3
2,614,956 + LRK53_RS11735 0.32 -0.8
2,614,956 + LRK53_RS11735 0.32 -2.3
2,614,956 + LRK53_RS11735 0.32 -3.2
2,614,956 + LRK53_RS11735 0.32 -0.3
2,614,956 + LRK53_RS11735 0.32 +0.0
2,614,956 + LRK53_RS11735 0.32 -2.3
2,614,956 + LRK53_RS11735 0.32 +0.4
2,614,956 + LRK53_RS11735 0.32 +0.0
2,614,956 + LRK53_RS11735 0.32 -2.0
2,614,957 - LRK53_RS11735 0.32 +0.0
2,614,957 - LRK53_RS11735 0.32 -1.9
2,614,957 - LRK53_RS11735 0.32 -0.3
2,614,957 - LRK53_RS11735 0.32 -0.0
2,614,957 - LRK53_RS11735 0.32 -1.5
2,614,957 - LRK53_RS11735 0.32 -1.0
2,614,957 - LRK53_RS11735 0.32 -3.3
2,614,957 - LRK53_RS11735 0.32 -0.9
2,614,957 - LRK53_RS11735 0.32 +0.8
2,614,957 - LRK53_RS11735 0.32 -0.3
2,614,957 - LRK53_RS11735 0.32 +0.2
2,614,957 - LRK53_RS11735 0.32 -0.7
2,614,957 - LRK53_RS11735 0.32 -2.7
2,615,042 + LRK53_RS11735 0.50 -1.0
2,615,042 + LRK53_RS11735 0.50 -1.4
2,615,042 + LRK53_RS11735 0.50 -0.5
2,615,043 - LRK53_RS11735 0.51 -1.8
2,615,043 - LRK53_RS11735 0.51 -0.6
2,615,043 - LRK53_RS11735 0.51 -0.7
2,615,043 - LRK53_RS11735 0.51 -0.6
2,615,043 - LRK53_RS11735 0.51 +0.2
2,615,067 + LRK53_RS11735 0.56 +0.5
2,615,067 + LRK53_RS11735 0.56 +0.3
2,615,067 + LRK53_RS11735 0.56 -0.3
2,615,067 + LRK53_RS11735 0.56 -0.2
2,615,067 + LRK53_RS11735 0.56 -1.2
2,615,067 + LRK53_RS11735 0.56 +0.1
2,615,067 + LRK53_RS11735 0.56 -0.5
2,615,067 + LRK53_RS11735 0.56 +0.5
2,615,067 + LRK53_RS11735 0.56 -0.8
2,615,068 - LRK53_RS11735 0.56 -1.0
2,615,068 - LRK53_RS11735 0.56 -1.1
2,615,068 - LRK53_RS11735 0.56 +0.3
2,615,068 - LRK53_RS11735 0.56 -2.3
2,615,068 - LRK53_RS11735 0.56 -1.0
2,615,068 - LRK53_RS11735 0.56 -0.5
2,615,068 - LRK53_RS11735 0.56 -1.0
2,615,068 - LRK53_RS11735 0.56 -0.3
2,615,068 - LRK53_RS11735 0.56 -0.9
2,615,068 - LRK53_RS11735 0.56 -0.5
2,615,068 - LRK53_RS11735 0.56 -0.0
2,615,068 - LRK53_RS11735 0.56 -0.3
2,615,068 - LRK53_RS11735 0.56 -0.5
2,615,068 - LRK53_RS11735 0.56 -1.0
2,615,145 + LRK53_RS11735 0.73 +0.7
2,615,145 + LRK53_RS11735 0.73 -0.9
2,615,145 + LRK53_RS11735 0.73 +1.4
2,615,145 + LRK53_RS11735 0.73 +0.0
2,615,145 + LRK53_RS11735 0.73 -0.6
2,615,145 + LRK53_RS11735 0.73 -1.7
2,615,145 + LRK53_RS11735 0.73 -0.4
2,615,145 + LRK53_RS11735 0.73 -0.8
2,615,145 + LRK53_RS11735 0.73 -0.6
2,615,145 + LRK53_RS11735 0.73 -1.0
2,615,145 + LRK53_RS11735 0.73 -1.3
2,615,145 + LRK53_RS11735 0.73 -0.8
2,615,145 + LRK53_RS11735 0.73 +0.2
2,615,145 + LRK53_RS11735 0.73 -0.6
2,615,146 - LRK53_RS11735 0.73 -0.4
2,615,146 - LRK53_RS11735 0.73 -0.7
2,615,146 - LRK53_RS11735 0.73 -0.4
2,615,146 - LRK53_RS11735 0.73 -0.0
2,615,146 - LRK53_RS11735 0.73 +0.1
2,615,146 - LRK53_RS11735 0.73 +0.8
2,615,146 - LRK53_RS11735 0.73 -1.7
2,615,146 - LRK53_RS11735 0.73 -1.2
2,615,146 - LRK53_RS11735 0.73 -0.2
2,615,146 - LRK53_RS11735 0.73 -0.9
2,615,146 - LRK53_RS11735 0.73 -2.0
2,615,146 - LRK53_RS11735 0.73 -0.9
2,615,146 - LRK53_RS11735 0.73 +1.9
2,615,146 - LRK53_RS11735 0.73 -1.6
2,615,245 + -1.0
2,615,245 + -1.0
2,615,246 - -3.4
2,615,246 - -2.8
2,615,246 - +1.1
2,615,246 - -1.4
2,615,246 - -1.7
2,615,246 - +1.0
2,615,246 - -0.0
2,615,265 + -1.4
2,615,265 + -0.5
2,615,265 + +0.6
2,615,265 + -0.8
2,615,265 + -0.5
2,615,265 + -1.2
2,615,265 + +0.2
2,615,265 + +1.5
2,615,266 - -1.8
2,615,266 - -0.3
2,615,266 - -2.4
2,615,266 - -1.7
2,615,266 - -0.8
2,615,266 - -0.5
2,615,266 - -0.3
2,615,266 - +0.4
2,615,266 - -2.2
2,615,266 - -1.5
2,615,398 + -0.2
2,615,398 + -0.1
2,615,398 + -3.4
2,615,398 + -0.2
2,615,398 + -1.4
2,615,398 + +0.3
2,615,399 - -2.2
2,615,399 - +0.5
2,615,399 - -0.0
2,615,399 - -0.3
2,615,399 - -0.8
2,615,399 - -0.4
2,615,399 - -0.8
2,615,399 - -0.5
2,615,399 - -1.0
2,615,399 - -1.1
2,615,399 - +1.3
2,616,106 + -0.6
2,616,106 + +3.2
2,616,106 + -1.2
2,616,107 - +0.1
2,616,107 - -0.6

Or see this region's nucleotide sequence