Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10185

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS10180 and LRK53_RS10185 are separated by 52 nucleotidesLRK53_RS10185 and LRK53_RS10190 overlap by 8 nucleotides LRK53_RS10180: LRK53_RS10180 - peptide chain release factor 3, at 2,274,034 to 2,275,644 _RS10180 LRK53_RS10185: LRK53_RS10185 - molecular chaperone DnaK, at 2,275,697 to 2,276,107 _RS10185 LRK53_RS10190: LRK53_RS10190 - chaperonin GroEL, at 2,276,100 to 2,277,722 _RS10190 Position (kb) 2275 2276 2277Strain fitness (log2 ratio) -2 -1 0 1 2at 2274.722 kb on - strand, within LRK53_RS10180at 2275.104 kb on - strand, within LRK53_RS10180at 2275.104 kb on - strand, within LRK53_RS10180at 2275.104 kb on - strand, within LRK53_RS10180at 2275.352 kb on + strand, within LRK53_RS10180at 2275.352 kb on + strand, within LRK53_RS10180at 2275.352 kb on + strand, within LRK53_RS10180at 2275.352 kb on + strand, within LRK53_RS10180at 2275.415 kb on + strand, within LRK53_RS10180at 2275.485 kb on + strandat 2275.485 kb on + strandat 2275.485 kb on + strandat 2275.486 kb on - strandat 2275.486 kb on - strandat 2275.486 kb on - strandat 2275.486 kb on - strandat 2275.486 kb on - strandat 2275.486 kb on - strandat 2275.486 kb on - strandat 2275.685 kb on - strandat 2276.107 kb on + strandat 2276.107 kb on + strandat 2276.108 kb on - strandat 2276.108 kb on - strandat 2276.159 kb on + strandat 2276.246 kb on + strandat 2276.246 kb on + strandat 2276.246 kb on + strandat 2276.246 kb on + strandat 2276.290 kb on + strand, within LRK53_RS10190at 2276.291 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190at 2277.068 kb on - strand, within LRK53_RS10190

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM
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2,274,722 - LRK53_RS10180 0.43 -0.3
2,275,104 - LRK53_RS10180 0.66 +0.3
2,275,104 - LRK53_RS10180 0.66 -0.7
2,275,104 - LRK53_RS10180 0.66 +1.6
2,275,352 + LRK53_RS10180 0.82 +1.6
2,275,352 + LRK53_RS10180 0.82 -1.5
2,275,352 + LRK53_RS10180 0.82 +1.0
2,275,352 + LRK53_RS10180 0.82 -0.7
2,275,415 + LRK53_RS10180 0.86 -2.1
2,275,485 + +0.7
2,275,485 + -1.2
2,275,485 + -0.1
2,275,486 - +0.3
2,275,486 - +1.8
2,275,486 - -1.0
2,275,486 - -1.3
2,275,486 - -0.3
2,275,486 - -0.5
2,275,486 - -1.4
2,275,685 - -0.0
2,276,107 + -1.5
2,276,107 + -0.6
2,276,108 - -1.0
2,276,108 - +0.6
2,276,159 + -1.1
2,276,246 + -1.5
2,276,246 + +0.4
2,276,246 + +2.1
2,276,246 + -0.7
2,276,290 + LRK53_RS10190 0.12 +0.1
2,276,291 - LRK53_RS10190 0.12 -0.5
2,277,068 - LRK53_RS10190 0.60 +0.2
2,277,068 - LRK53_RS10190 0.60 -1.4
2,277,068 - LRK53_RS10190 0.60 +1.2
2,277,068 - LRK53_RS10190 0.60 +1.9
2,277,068 - LRK53_RS10190 0.60 -1.2
2,277,068 - LRK53_RS10190 0.60 -0.3
2,277,068 - LRK53_RS10190 0.60 +0.3
2,277,068 - LRK53_RS10190 0.60 -0.6

Or see this region's nucleotide sequence