Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10180 and LRK53_RS10185 are separated by 52 nucleotides LRK53_RS10185 and LRK53_RS10190 overlap by 8 nucleotides
LRK53_RS10180: LRK53_RS10180 - peptide chain release factor 3, at 2,274,034 to 2,275,644
_RS10180
LRK53_RS10185: LRK53_RS10185 - molecular chaperone DnaK, at 2,275,697 to 2,276,107
_RS10185
LRK53_RS10190: LRK53_RS10190 - chaperonin GroEL, at 2,276,100 to 2,277,722
_RS10190
Position (kb)
2275
2276
2277 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2274.722 kb on - strand, within LRK53_RS10180 at 2275.104 kb on - strand, within LRK53_RS10180 at 2275.104 kb on - strand, within LRK53_RS10180 at 2275.104 kb on - strand, within LRK53_RS10180 at 2275.352 kb on + strand, within LRK53_RS10180 at 2275.352 kb on + strand, within LRK53_RS10180 at 2275.352 kb on + strand, within LRK53_RS10180 at 2275.352 kb on + strand, within LRK53_RS10180 at 2275.415 kb on + strand, within LRK53_RS10180 at 2275.485 kb on + strand at 2275.485 kb on + strand at 2275.485 kb on + strand at 2275.486 kb on - strand at 2275.486 kb on - strand at 2275.486 kb on - strand at 2275.486 kb on - strand at 2275.486 kb on - strand at 2275.486 kb on - strand at 2275.486 kb on - strand at 2275.685 kb on - strand at 2276.107 kb on + strand at 2276.107 kb on + strand at 2276.108 kb on - strand at 2276.108 kb on - strand at 2276.159 kb on + strand at 2276.246 kb on + strand at 2276.246 kb on + strand at 2276.246 kb on + strand at 2276.246 kb on + strand at 2276.290 kb on + strand, within LRK53_RS10190 at 2276.291 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190 at 2277.068 kb on - strand, within LRK53_RS10190
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 2,274,722 - LRK53_RS10180 0.43 -0.3 2,275,104 - LRK53_RS10180 0.66 +0.3 2,275,104 - LRK53_RS10180 0.66 -0.7 2,275,104 - LRK53_RS10180 0.66 +1.6 2,275,352 + LRK53_RS10180 0.82 +1.6 2,275,352 + LRK53_RS10180 0.82 -1.5 2,275,352 + LRK53_RS10180 0.82 +1.0 2,275,352 + LRK53_RS10180 0.82 -0.7 2,275,415 + LRK53_RS10180 0.86 -2.1 2,275,485 + +0.7 2,275,485 + -1.2 2,275,485 + -0.1 2,275,486 - +0.3 2,275,486 - +1.8 2,275,486 - -1.0 2,275,486 - -1.3 2,275,486 - -0.3 2,275,486 - -0.5 2,275,486 - -1.4 2,275,685 - -0.0 2,276,107 + -1.5 2,276,107 + -0.6 2,276,108 - -1.0 2,276,108 - +0.6 2,276,159 + -1.1 2,276,246 + -1.5 2,276,246 + +0.4 2,276,246 + +2.1 2,276,246 + -0.7 2,276,290 + LRK53_RS10190 0.12 +0.1 2,276,291 - LRK53_RS10190 0.12 -0.5 2,277,068 - LRK53_RS10190 0.60 +0.2 2,277,068 - LRK53_RS10190 0.60 -1.4 2,277,068 - LRK53_RS10190 0.60 +1.2 2,277,068 - LRK53_RS10190 0.60 +1.9 2,277,068 - LRK53_RS10190 0.60 -1.2 2,277,068 - LRK53_RS10190 0.60 -0.3 2,277,068 - LRK53_RS10190 0.60 +0.3 2,277,068 - LRK53_RS10190 0.60 -0.6
Or see this region's nucleotide sequence