Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04245 and LRK53_RS04250 are separated by 118 nucleotides LRK53_RS04250 and LRK53_RS04255 are separated by 45 nucleotides LRK53_RS04255 and LRK53_RS04260 overlap by 4 nucleotides LRK53_RS04260 and LRK53_RS04265 are separated by 166 nucleotides
LRK53_RS04245: LRK53_RS04245 - beta-agarase, at 989,833 to 991,968
_RS04245
LRK53_RS04250: LRK53_RS04250 - hypothetical protein, at 992,087 to 992,515
_RS04250
LRK53_RS04255: LRK53_RS04255 - hypothetical protein, at 992,561 to 992,968
_RS04255
LRK53_RS04260: LRK53_RS04260 - DUF962 domain-containing protein, at 992,965 to 993,456
_RS04260
LRK53_RS04265: LRK53_RS04265 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 993,623 to 994,519
_RS04265
Position (kb) 992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 991.582 kb on + strand, within LRK53_RS04245 at 991.609 kb on + strand, within LRK53_RS04245 at 991.610 kb on - strand, within LRK53_RS04245 at 991.610 kb on - strand, within LRK53_RS04245 at 991.765 kb on + strand at 991.765 kb on + strand at 991.765 kb on + strand at 991.765 kb on + strand at 991.765 kb on + strand at 991.766 kb on - strand at 991.766 kb on - strand at 991.828 kb on + strand at 991.829 kb on - strand at 992.007 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.086 kb on + strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.087 kb on - strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.210 kb on + strand, within LRK53_RS04250 at 992.210 kb on + strand, within LRK53_RS04250 at 992.210 kb on + strand, within LRK53_RS04250 at 992.210 kb on + strand, within LRK53_RS04250 at 992.210 kb on + strand, within LRK53_RS04250 at 992.211 kb on - strand, within LRK53_RS04250 at 992.211 kb on - strand, within LRK53_RS04250 at 992.211 kb on - strand, within LRK53_RS04250 at 992.211 kb on - strand, within LRK53_RS04250 at 992.211 kb on - strand, within LRK53_RS04250 at 992.211 kb on - strand, within LRK53_RS04250 at 992.211 kb on - strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.366 kb on + strand, within LRK53_RS04250 at 992.367 kb on - strand, within LRK53_RS04250 at 992.367 kb on - strand, within LRK53_RS04250 at 992.367 kb on - strand, within LRK53_RS04250 at 992.367 kb on - strand, within LRK53_RS04250 at 992.367 kb on - strand, within LRK53_RS04250 at 992.432 kb on + strand, within LRK53_RS04250 at 992.432 kb on + strand, within LRK53_RS04250 at 992.432 kb on + strand, within LRK53_RS04250 at 992.433 kb on - strand, within LRK53_RS04250 at 992.433 kb on - strand, within LRK53_RS04250 at 992.433 kb on - strand, within LRK53_RS04250 at 992.433 kb on - strand, within LRK53_RS04250 at 992.769 kb on + strand, within LRK53_RS04255 at 992.770 kb on - strand, within LRK53_RS04255 at 992.770 kb on - strand, within LRK53_RS04255 at 992.770 kb on - strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.954 kb on - strand at 993.035 kb on + strand, within LRK53_RS04260 at 993.035 kb on + strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.115 kb on + strand, within LRK53_RS04260 at 993.116 kb on - strand, within LRK53_RS04260 at 993.116 kb on - strand, within LRK53_RS04260 at 993.161 kb on + strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.239 kb on + strand, within LRK53_RS04260 at 993.240 kb on - strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.488 kb on + strand at 993.488 kb on + strand at 993.488 kb on + strand at 993.488 kb on + strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.624 kb on + strand at 993.666 kb on + strand at 993.666 kb on + strand at 993.667 kb on - strand at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.787 kb on + strand, within LRK53_RS04265 at 993.788 kb on - strand, within LRK53_RS04265 at 993.798 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.928 kb on - strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.946 kb on - strand, within LRK53_RS04265 at 993.946 kb on - strand, within LRK53_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 991,582 + LRK53_RS04245 0.82 +0.4 991,609 + LRK53_RS04245 0.83 +1.0 991,610 - LRK53_RS04245 0.83 +0.6 991,610 - LRK53_RS04245 0.83 -0.7 991,765 + -0.3 991,765 + +0.0 991,765 + -3.0 991,765 + +0.0 991,765 + -0.9 991,766 - -0.2 991,766 - -0.7 991,828 + -1.6 991,829 - -1.1 992,007 + -0.9 992,086 + -1.0 992,086 + -1.3 992,086 + -0.3 992,086 + -1.3 992,086 + -2.3 992,086 + -0.4 992,086 + -2.2 992,086 + +0.1 992,086 + -1.3 992,086 + -1.3 992,086 + -0.3 992,086 + -0.5 992,086 + -0.4 992,086 + -1.1 992,086 + -2.0 992,086 + +2.0 992,086 + -0.8 992,086 + -1.1 992,086 + -0.9 992,086 + -2.2 992,086 + -0.9 992,086 + -0.6 992,086 + -0.4 992,086 + -1.2 992,086 + +2.2 992,086 + +0.6 992,086 + -2.2 992,086 + +0.0 992,086 + +0.7 992,086 + -0.7 992,086 + -0.9 992,086 + -0.5 992,086 + -0.9 992,086 + -0.2 992,086 + +0.6 992,087 - +0.7 992,087 - -1.0 992,087 - -1.1 992,087 - -1.4 992,087 - -1.2 992,087 - -0.4 992,087 - -0.7 992,087 - +1.2 992,087 - +1.1 992,087 - -1.5 992,087 - +0.0 992,087 - -0.3 992,087 - -1.1 992,087 - +0.6 992,087 - +0.1 992,087 - -0.5 992,087 - -0.6 992,087 - -1.9 992,087 - -0.8 992,087 - -0.7 992,087 - -0.6 992,087 - +2.7 992,087 - -1.8 992,092 + +1.0 992,092 + +1.9 992,092 + -0.7 992,092 + +0.2 992,092 + -1.3 992,092 + -1.7 992,093 - -0.2 992,093 - -0.4 992,093 - -0.2 992,093 - -0.7 992,093 - +0.4 992,093 - +1.1 992,093 - +0.0 992,093 - -1.3 992,093 - -1.3 992,093 - +0.6 992,210 + LRK53_RS04250 0.29 -1.1 992,210 + LRK53_RS04250 0.29 +0.8 992,210 + LRK53_RS04250 0.29 -0.7 992,210 + LRK53_RS04250 0.29 -1.3 992,210 + LRK53_RS04250 0.29 -1.6 992,211 - LRK53_RS04250 0.29 -1.4 992,211 - LRK53_RS04250 0.29 -1.0 992,211 - LRK53_RS04250 0.29 -0.4 992,211 - LRK53_RS04250 0.29 -1.1 992,211 - LRK53_RS04250 0.29 -0.6 992,211 - LRK53_RS04250 0.29 -0.9 992,211 - LRK53_RS04250 0.29 +0.5 992,366 + LRK53_RS04250 0.65 -0.9 992,366 + LRK53_RS04250 0.65 -0.9 992,366 + LRK53_RS04250 0.65 -0.8 992,366 + LRK53_RS04250 0.65 -0.5 992,366 + LRK53_RS04250 0.65 -0.9 992,366 + LRK53_RS04250 0.65 -1.1 992,366 + LRK53_RS04250 0.65 -1.7 992,366 + LRK53_RS04250 0.65 -1.9 992,366 + LRK53_RS04250 0.65 +0.6 992,366 + LRK53_RS04250 0.65 +0.8 992,366 + LRK53_RS04250 0.65 -0.6 992,366 + LRK53_RS04250 0.65 -0.5 992,366 + LRK53_RS04250 0.65 -1.9 992,366 + LRK53_RS04250 0.65 -0.3 992,366 + LRK53_RS04250 0.65 -0.6 992,366 + LRK53_RS04250 0.65 -1.1 992,367 - LRK53_RS04250 0.65 -1.4 992,367 - LRK53_RS04250 0.65 -1.8 992,367 - LRK53_RS04250 0.65 -0.5 992,367 - LRK53_RS04250 0.65 +1.0 992,367 - LRK53_RS04250 0.65 -0.9 992,432 + LRK53_RS04250 0.80 -1.5 992,432 + LRK53_RS04250 0.80 -1.0 992,432 + LRK53_RS04250 0.80 -0.9 992,433 - LRK53_RS04250 0.81 -2.0 992,433 - LRK53_RS04250 0.81 +0.3 992,433 - LRK53_RS04250 0.81 +1.6 992,433 - LRK53_RS04250 0.81 +1.5 992,769 + LRK53_RS04255 0.51 -0.6 992,770 - LRK53_RS04255 0.51 -2.4 992,770 - LRK53_RS04255 0.51 -2.4 992,770 - LRK53_RS04255 0.51 -1.4 992,829 + LRK53_RS04255 0.66 -0.1 992,829 + LRK53_RS04255 0.66 -0.1 992,829 + LRK53_RS04255 0.66 -0.5 992,829 + LRK53_RS04255 0.66 -1.4 992,829 + LRK53_RS04255 0.66 +1.6 992,829 + LRK53_RS04255 0.66 -2.4 992,829 + LRK53_RS04255 0.66 -0.9 992,829 + LRK53_RS04255 0.66 -0.7 992,829 + LRK53_RS04255 0.66 +1.0 992,829 + LRK53_RS04255 0.66 -0.8 992,829 + LRK53_RS04255 0.66 -0.5 992,829 + LRK53_RS04255 0.66 -0.7 992,829 + LRK53_RS04255 0.66 -1.9 992,829 + LRK53_RS04255 0.66 +0.4 992,830 - LRK53_RS04255 0.66 -0.1 992,830 - LRK53_RS04255 0.66 -0.1 992,830 - LRK53_RS04255 0.66 +1.0 992,830 - LRK53_RS04255 0.66 -1.0 992,830 - LRK53_RS04255 0.66 -1.3 992,919 + LRK53_RS04255 0.88 -0.1 992,919 + LRK53_RS04255 0.88 -0.7 992,919 + LRK53_RS04255 0.88 +0.8 992,919 + LRK53_RS04255 0.88 -1.1 992,919 + LRK53_RS04255 0.88 -1.1 992,919 + LRK53_RS04255 0.88 -0.4 992,919 + LRK53_RS04255 0.88 -1.6 992,919 + LRK53_RS04255 0.88 -2.4 992,919 + LRK53_RS04255 0.88 -1.0 992,920 - LRK53_RS04255 0.88 -0.9 992,920 - LRK53_RS04255 0.88 -1.3 992,920 - LRK53_RS04255 0.88 -0.6 992,920 - LRK53_RS04255 0.88 +0.5 992,920 - LRK53_RS04255 0.88 -0.2 992,920 - LRK53_RS04255 0.88 +0.2 992,920 - LRK53_RS04255 0.88 -2.1 992,954 - -0.9 993,035 + LRK53_RS04260 0.14 -2.6 993,035 + LRK53_RS04260 0.14 -3.0 993,036 - LRK53_RS04260 0.14 -1.2 993,036 - LRK53_RS04260 0.14 +0.4 993,036 - LRK53_RS04260 0.14 -2.2 993,115 + LRK53_RS04260 0.30 +0.0 993,116 - LRK53_RS04260 0.31 +1.1 993,116 - LRK53_RS04260 0.31 +0.2 993,161 + LRK53_RS04260 0.40 -0.4 993,162 - LRK53_RS04260 0.40 -1.0 993,162 - LRK53_RS04260 0.40 -2.2 993,162 - LRK53_RS04260 0.40 -0.0 993,162 - LRK53_RS04260 0.40 -0.7 993,239 + LRK53_RS04260 0.56 -1.9 993,240 - LRK53_RS04260 0.56 -1.2 993,245 + LRK53_RS04260 0.57 +0.7 993,245 + LRK53_RS04260 0.57 -1.8 993,245 + LRK53_RS04260 0.57 -1.0 993,246 - LRK53_RS04260 0.57 +1.0 993,246 - LRK53_RS04260 0.57 -0.8 993,246 - LRK53_RS04260 0.57 +1.0 993,246 - LRK53_RS04260 0.57 +1.7 993,404 + LRK53_RS04260 0.89 -2.8 993,404 + LRK53_RS04260 0.89 -2.1 993,404 + LRK53_RS04260 0.89 -1.0 993,404 + LRK53_RS04260 0.89 -1.8 993,404 + LRK53_RS04260 0.89 -1.5 993,404 + LRK53_RS04260 0.89 -2.5 993,404 + LRK53_RS04260 0.89 -1.1 993,405 - LRK53_RS04260 0.89 +0.2 993,405 - LRK53_RS04260 0.89 +1.7 993,405 - LRK53_RS04260 0.89 -0.7 993,405 - LRK53_RS04260 0.89 -2.0 993,405 - LRK53_RS04260 0.89 -2.6 993,405 - LRK53_RS04260 0.89 +1.3 993,488 + -1.4 993,488 + -0.2 993,488 + -0.6 993,488 + -2.0 993,489 - -0.6 993,489 - -1.1 993,489 - -0.8 993,489 - -2.3 993,489 - -1.8 993,489 - -2.4 993,489 - +0.3 993,532 - +0.2 993,532 - +1.0 993,532 - -0.9 993,532 - -1.3 993,532 - -0.8 993,624 + -0.0 993,666 + +1.6 993,666 + -0.4 993,667 - +0.0 993,772 - LRK53_RS04265 0.17 -1.8 993,772 - LRK53_RS04265 0.17 -0.9 993,772 - LRK53_RS04265 0.17 -0.2 993,787 + LRK53_RS04265 0.18 -0.4 993,788 - LRK53_RS04265 0.18 +0.3 993,798 + LRK53_RS04265 0.20 +0.8 993,855 + LRK53_RS04265 0.26 +2.2 993,855 + LRK53_RS04265 0.26 -0.9 993,855 + LRK53_RS04265 0.26 -1.7 993,855 + LRK53_RS04265 0.26 -0.2 993,855 + LRK53_RS04265 0.26 -0.2 993,856 - LRK53_RS04265 0.26 -1.4 993,856 - LRK53_RS04265 0.26 +0.6 993,856 - LRK53_RS04265 0.26 +1.4 993,856 - LRK53_RS04265 0.26 -1.4 993,928 - LRK53_RS04265 0.34 -1.9 993,945 + LRK53_RS04265 0.36 -1.1 993,945 + LRK53_RS04265 0.36 -0.7 993,945 + LRK53_RS04265 0.36 -1.1 993,945 + LRK53_RS04265 0.36 +2.7 993,946 - LRK53_RS04265 0.36 -2.6 993,946 - LRK53_RS04265 0.36 -0.4
Or see this region's nucleotide sequence