Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02210 and LRK53_RS02215 are separated by 63 nucleotides LRK53_RS02215 and LRK53_RS02220 are separated by 94 nucleotides LRK53_RS02220 and LRK53_RS02225 are separated by 103 nucleotides
LRK53_RS02210: LRK53_RS02210 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 514,866 to 516,260
_RS02210
LRK53_RS02215: LRK53_RS02215 - pteridine-dependent deoxygenase, at 516,324 to 517,313
_RS02215
LRK53_RS02220: LRK53_RS02220 - phosphopantetheine-binding protein, at 517,408 to 517,677
_RS02220
LRK53_RS02225: LRK53_RS02225 - hypothetical protein, at 517,781 to 518,500
_RS02225
Position (kb) 516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 516.326 kb on - strand at 516.463 kb on + strand, within LRK53_RS02215 at 516.463 kb on + strand, within LRK53_RS02215 at 516.463 kb on + strand, within LRK53_RS02215 at 516.463 kb on + strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.676 kb on + strand, within LRK53_RS02215 at 516.677 kb on - strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.970 kb on + strand, within LRK53_RS02215 at 516.970 kb on + strand, within LRK53_RS02215 at 516.971 kb on - strand, within LRK53_RS02215 at 516.971 kb on - strand, within LRK53_RS02215 at 516.971 kb on - strand, within LRK53_RS02215 at 517.081 kb on + strand, within LRK53_RS02215 at 517.082 kb on - strand, within LRK53_RS02215 at 517.082 kb on - strand, within LRK53_RS02215 at 517.082 kb on - strand, within LRK53_RS02215 at 517.212 kb on - strand, within LRK53_RS02215 at 517.252 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.396 kb on - strand at 517.396 kb on - strand at 518.015 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.076 kb on - strand, within LRK53_RS02225 at 518.076 kb on - strand, within LRK53_RS02225 at 518.076 kb on - strand, within LRK53_RS02225 at 518.177 kb on + strand, within LRK53_RS02225 at 518.177 kb on + strand, within LRK53_RS02225 at 518.177 kb on + strand, within LRK53_RS02225
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 516,326 - -0.1 516,463 + LRK53_RS02215 0.14 -0.4 516,463 + LRK53_RS02215 0.14 +1.1 516,463 + LRK53_RS02215 0.14 +1.8 516,463 + LRK53_RS02215 0.14 -0.4 516,464 - LRK53_RS02215 0.14 +0.2 516,464 - LRK53_RS02215 0.14 +1.0 516,464 - LRK53_RS02215 0.14 +0.1 516,464 - LRK53_RS02215 0.14 -1.9 516,464 - LRK53_RS02215 0.14 -1.1 516,464 - LRK53_RS02215 0.14 +0.4 516,464 - LRK53_RS02215 0.14 -0.4 516,464 - LRK53_RS02215 0.14 -0.7 516,464 - LRK53_RS02215 0.14 -1.3 516,464 - LRK53_RS02215 0.14 -0.4 516,464 - LRK53_RS02215 0.14 -1.2 516,464 - LRK53_RS02215 0.14 -1.1 516,676 + LRK53_RS02215 0.36 -1.7 516,677 - LRK53_RS02215 0.36 +2.0 516,754 + LRK53_RS02215 0.43 -2.8 516,754 + LRK53_RS02215 0.43 +1.3 516,754 + LRK53_RS02215 0.43 +1.1 516,754 + LRK53_RS02215 0.43 +0.7 516,754 + LRK53_RS02215 0.43 -1.5 516,754 + LRK53_RS02215 0.43 -0.3 516,754 + LRK53_RS02215 0.43 +1.4 516,755 - LRK53_RS02215 0.44 +0.2 516,755 - LRK53_RS02215 0.44 -0.6 516,755 - LRK53_RS02215 0.44 -0.2 516,755 - LRK53_RS02215 0.44 +0.0 516,755 - LRK53_RS02215 0.44 -2.6 516,755 - LRK53_RS02215 0.44 -1.2 516,755 - LRK53_RS02215 0.44 -1.5 516,755 - LRK53_RS02215 0.44 -0.4 516,865 + LRK53_RS02215 0.55 -0.3 516,865 + LRK53_RS02215 0.55 -0.7 516,865 + LRK53_RS02215 0.55 +0.8 516,865 + LRK53_RS02215 0.55 -0.1 516,865 + LRK53_RS02215 0.55 -1.0 516,865 + LRK53_RS02215 0.55 -0.8 516,865 + LRK53_RS02215 0.55 -0.3 516,865 + LRK53_RS02215 0.55 -1.0 516,866 - LRK53_RS02215 0.55 +1.7 516,866 - LRK53_RS02215 0.55 +1.0 516,866 - LRK53_RS02215 0.55 -0.1 516,866 - LRK53_RS02215 0.55 +0.2 516,866 - LRK53_RS02215 0.55 -1.7 516,907 + LRK53_RS02215 0.59 -0.7 516,907 + LRK53_RS02215 0.59 -1.5 516,907 + LRK53_RS02215 0.59 +0.5 516,907 + LRK53_RS02215 0.59 +1.3 516,908 - LRK53_RS02215 0.59 -1.2 516,908 - LRK53_RS02215 0.59 -0.7 516,908 - LRK53_RS02215 0.59 +0.2 516,908 - LRK53_RS02215 0.59 -1.3 516,908 - LRK53_RS02215 0.59 -0.9 516,908 - LRK53_RS02215 0.59 +1.9 516,970 + LRK53_RS02215 0.65 +1.3 516,970 + LRK53_RS02215 0.65 +0.4 516,971 - LRK53_RS02215 0.65 -0.4 516,971 - LRK53_RS02215 0.65 +0.9 516,971 - LRK53_RS02215 0.65 +0.3 517,081 + LRK53_RS02215 0.76 -0.6 517,082 - LRK53_RS02215 0.77 -0.4 517,082 - LRK53_RS02215 0.77 -0.4 517,082 - LRK53_RS02215 0.77 -1.3 517,212 - LRK53_RS02215 0.90 -0.4 517,252 + -0.4 517,313 + +0.2 517,313 + +1.7 517,313 + -1.8 517,313 + -0.8 517,313 + -0.1 517,313 + +1.0 517,313 + -0.1 517,313 + +0.6 517,313 + -1.7 517,313 + -2.3 517,314 - -1.7 517,314 - -1.4 517,314 - +0.0 517,314 - -0.4 517,314 - -1.2 517,314 - -1.4 517,314 - +1.2 517,344 + -0.3 517,344 + -0.8 517,344 + -0.7 517,344 + -2.0 517,344 + +0.0 517,344 + +0.9 517,344 + -0.4 517,344 + +1.3 517,344 + +0.6 517,344 + +0.1 517,344 + +1.3 517,344 + -0.1 517,344 + -2.5 517,344 + -1.6 517,345 - -0.5 517,345 - +0.9 517,345 - -1.9 517,345 - +0.1 517,345 - -1.1 517,345 - +1.2 517,345 - -0.7 517,345 - +0.0 517,349 + -0.0 517,349 + +1.0 517,349 + +0.5 517,349 + +0.9 517,349 + -0.4 517,349 + -0.4 517,349 + -0.6 517,349 + +0.5 517,349 + -0.4 517,349 + -0.2 517,349 + -0.3 517,350 - +0.3 517,350 - -2.6 517,350 - -0.5 517,350 - -0.7 517,350 - -0.3 517,350 - -1.7 517,350 - +1.3 517,396 - -0.8 517,396 - -2.1 518,015 + LRK53_RS02225 0.33 -1.3 518,075 + LRK53_RS02225 0.41 -0.9 518,075 + LRK53_RS02225 0.41 -0.7 518,075 + LRK53_RS02225 0.41 -1.4 518,075 + LRK53_RS02225 0.41 +0.7 518,075 + LRK53_RS02225 0.41 -0.4 518,076 - LRK53_RS02225 0.41 +0.4 518,076 - LRK53_RS02225 0.41 -1.2 518,076 - LRK53_RS02225 0.41 -0.1 518,177 + LRK53_RS02225 0.55 +1.0 518,177 + LRK53_RS02225 0.55 -2.6 518,177 + LRK53_RS02225 0.55 -0.2
Or see this region's nucleotide sequence