Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44600

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44595 and QEN71_RS44600 are separated by 386 nucleotidesQEN71_RS44600 and QEN71_RS44605 are separated by 160 nucleotides QEN71_RS44595: QEN71_RS44595 - IS3 family transposase, at 385,735 to 386,482 _RS44595 QEN71_RS44600: QEN71_RS44600 - IS91 family transposase, at 386,869 to 387,897 _RS44600 QEN71_RS44605: QEN71_RS44605 - tyrosine-type recombinase/integrase, at 388,058 to 389,305 _RS44605 Position (kb) 386 387 388Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 385.930 kb on + strand, within QEN71_RS44595at 385.931 kb on - strand, within QEN71_RS44595at 385.952 kb on - strand, within QEN71_RS44595at 385.952 kb on - strand, within QEN71_RS44595at 385.977 kb on + strand, within QEN71_RS44595at 386.023 kb on + strand, within QEN71_RS44595at 386.023 kb on + strand, within QEN71_RS44595at 386.023 kb on + strand, within QEN71_RS44595at 386.023 kb on + strand, within QEN71_RS44595at 386.023 kb on + strand, within QEN71_RS44595at 386.023 kb on + strand, within QEN71_RS44595at 386.024 kb on - strand, within QEN71_RS44595at 386.024 kb on - strand, within QEN71_RS44595at 386.024 kb on - strand, within QEN71_RS44595at 386.024 kb on - strand, within QEN71_RS44595at 386.167 kb on - strand, within QEN71_RS44595at 386.280 kb on + strand, within QEN71_RS44595at 386.280 kb on + strand, within QEN71_RS44595at 386.281 kb on - strand, within QEN71_RS44595at 386.388 kb on + strand, within QEN71_RS44595at 386.388 kb on + strand, within QEN71_RS44595at 386.388 kb on + strand, within QEN71_RS44595at 386.388 kb on + strand, within QEN71_RS44595at 386.389 kb on - strand, within QEN71_RS44595at 386.389 kb on - strand, within QEN71_RS44595at 386.389 kb on - strand, within QEN71_RS44595at 386.389 kb on - strand, within QEN71_RS44595at 386.643 kb on - strandat 386.686 kb on + strandat 386.686 kb on + strandat 386.687 kb on - strandat 386.687 kb on - strandat 386.919 kb on + strandat 386.919 kb on + strandat 386.919 kb on + strandat 386.919 kb on + strandat 386.919 kb on + strandat 386.919 kb on + strandat 386.920 kb on - strandat 386.973 kb on - strand, within QEN71_RS44600at 387.006 kb on - strand, within QEN71_RS44600at 387.195 kb on + strand, within QEN71_RS44600at 387.195 kb on + strand, within QEN71_RS44600at 387.195 kb on + strand, within QEN71_RS44600at 387.216 kb on - strand, within QEN71_RS44600at 387.216 kb on - strand, within QEN71_RS44600at 387.257 kb on - strand, within QEN71_RS44600at 387.257 kb on - strand, within QEN71_RS44600at 387.293 kb on + strand, within QEN71_RS44600at 387.293 kb on + strand, within QEN71_RS44600at 387.305 kb on + strand, within QEN71_RS44600at 387.305 kb on + strand, within QEN71_RS44600at 387.348 kb on - strand, within QEN71_RS44600at 387.348 kb on - strand, within QEN71_RS44600at 387.497 kb on + strand, within QEN71_RS44600at 387.791 kb on + strand, within QEN71_RS44600at 387.792 kb on - strand, within QEN71_RS44600at 387.792 kb on - strand, within QEN71_RS44600at 387.885 kb on + strandat 387.885 kb on + strandat 387.885 kb on + strandat 387.885 kb on + strandat 387.903 kb on + strandat 387.903 kb on + strandat 387.903 kb on + strandat 387.904 kb on - strandat 387.904 kb on - strandat 387.904 kb on - strandat 387.904 kb on - strandat 387.904 kb on - strandat 387.904 kb on - strandat 387.904 kb on - strandat 387.904 kb on - strandat 387.904 kb on - strandat 388.014 kb on + strandat 388.062 kb on + strandat 388.063 kb on - strandat 388.078 kb on - strandat 388.105 kb on + strandat 388.106 kb on - strandat 388.163 kb on + strandat 388.164 kb on - strandat 388.164 kb on - strandat 388.187 kb on + strand, within QEN71_RS44605at 388.187 kb on + strand, within QEN71_RS44605at 388.187 kb on + strand, within QEN71_RS44605at 388.188 kb on - strand, within QEN71_RS44605at 388.188 kb on - strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.191 kb on + strand, within QEN71_RS44605at 388.192 kb on - strand, within QEN71_RS44605at 388.192 kb on - strand, within QEN71_RS44605at 388.192 kb on - strand, within QEN71_RS44605at 388.251 kb on + strand, within QEN71_RS44605at 388.252 kb on - strand, within QEN71_RS44605at 388.341 kb on - strand, within QEN71_RS44605at 388.341 kb on - strand, within QEN71_RS44605at 388.367 kb on + strand, within QEN71_RS44605at 388.429 kb on + strand, within QEN71_RS44605at 388.429 kb on + strand, within QEN71_RS44605at 388.429 kb on + strand, within QEN71_RS44605at 388.429 kb on + strand, within QEN71_RS44605at 388.430 kb on - strand, within QEN71_RS44605at 388.430 kb on - strand, within QEN71_RS44605at 388.499 kb on + strand, within QEN71_RS44605at 388.499 kb on + strand, within QEN71_RS44605at 388.500 kb on - strand, within QEN71_RS44605at 388.500 kb on - strand, within QEN71_RS44605at 388.530 kb on + strand, within QEN71_RS44605at 388.530 kb on + strand, within QEN71_RS44605at 388.531 kb on - strand, within QEN71_RS44605at 388.613 kb on - strand, within QEN71_RS44605at 388.655 kb on + strand, within QEN71_RS44605at 388.656 kb on - strand, within QEN71_RS44605at 388.710 kb on + strand, within QEN71_RS44605at 388.770 kb on + strand, within QEN71_RS44605at 388.771 kb on - strand, within QEN71_RS44605at 388.773 kb on + strand, within QEN71_RS44605

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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385,930 + QEN71_RS44595 0.26 -0.2
385,931 - QEN71_RS44595 0.26 +0.5
385,952 - QEN71_RS44595 0.29 -0.2
385,952 - QEN71_RS44595 0.29 +0.1
385,977 + QEN71_RS44595 0.32 -1.5
386,023 + QEN71_RS44595 0.39 -0.1
386,023 + QEN71_RS44595 0.39 +0.4
386,023 + QEN71_RS44595 0.39 -0.5
386,023 + QEN71_RS44595 0.39 -0.5
386,023 + QEN71_RS44595 0.39 +1.0
386,023 + QEN71_RS44595 0.39 -1.0
386,024 - QEN71_RS44595 0.39 -0.8
386,024 - QEN71_RS44595 0.39 -0.8
386,024 - QEN71_RS44595 0.39 +0.4
386,024 - QEN71_RS44595 0.39 +0.4
386,167 - QEN71_RS44595 0.58 -0.9
386,280 + QEN71_RS44595 0.73 +0.8
386,280 + QEN71_RS44595 0.73 +0.2
386,281 - QEN71_RS44595 0.73 -0.8
386,388 + QEN71_RS44595 0.87 -6.7
386,388 + QEN71_RS44595 0.87 +0.1
386,388 + QEN71_RS44595 0.87 +0.4
386,388 + QEN71_RS44595 0.87 +0.4
386,389 - QEN71_RS44595 0.87 -0.2
386,389 - QEN71_RS44595 0.87 +0.2
386,389 - QEN71_RS44595 0.87 +0.1
386,389 - QEN71_RS44595 0.87 +0.0
386,643 - +1.4
386,686 + -1.8
386,686 + -1.4
386,687 - -0.5
386,687 - -1.1
386,919 + -0.5
386,919 + +0.2
386,919 + +0.2
386,919 + +0.2
386,919 + +1.5
386,919 + +0.0
386,920 - -0.3
386,973 - QEN71_RS44600 0.10 -0.2
387,006 - QEN71_RS44600 0.13 -0.5
387,195 + QEN71_RS44600 0.32 +1.8
387,195 + QEN71_RS44600 0.32 -0.3
387,195 + QEN71_RS44600 0.32 +0.8
387,216 - QEN71_RS44600 0.34 -0.2
387,216 - QEN71_RS44600 0.34 +0.1
387,257 - QEN71_RS44600 0.38 -0.2
387,257 - QEN71_RS44600 0.38 -0.8
387,293 + QEN71_RS44600 0.41 +0.5
387,293 + QEN71_RS44600 0.41 -2.3
387,305 + QEN71_RS44600 0.42 -2.5
387,305 + QEN71_RS44600 0.42 -1.3
387,348 - QEN71_RS44600 0.47 -0.1
387,348 - QEN71_RS44600 0.47 -0.1
387,497 + QEN71_RS44600 0.61 +0.7
387,791 + QEN71_RS44600 0.90 +0.2
387,792 - QEN71_RS44600 0.90 +0.6
387,792 - QEN71_RS44600 0.90 +1.7
387,885 + -0.2
387,885 + -1.9
387,885 + -0.2
387,885 + +1.4
387,903 + -0.2
387,903 + -0.3
387,903 + +0.7
387,904 - +0.2
387,904 - -0.5
387,904 - -1.8
387,904 - -0.2
387,904 - +0.1
387,904 - -0.1
387,904 - +0.1
387,904 - +1.0
387,904 - -1.0
388,014 + -0.2
388,062 + -0.5
388,063 - -0.4
388,078 - +0.1
388,105 + -0.3
388,106 - -0.5
388,163 + +0.3
388,164 - +0.9
388,164 - -0.0
388,187 + QEN71_RS44605 0.10 +1.2
388,187 + QEN71_RS44605 0.10 -0.3
388,187 + QEN71_RS44605 0.10 -0.9
388,188 - QEN71_RS44605 0.10 -0.1
388,188 - QEN71_RS44605 0.10 -1.6
388,191 + QEN71_RS44605 0.11 +0.3
388,191 + QEN71_RS44605 0.11 -0.2
388,191 + QEN71_RS44605 0.11 +1.8
388,191 + QEN71_RS44605 0.11 +0.4
388,191 + QEN71_RS44605 0.11 +0.8
388,191 + QEN71_RS44605 0.11 -0.2
388,191 + QEN71_RS44605 0.11 +0.1
388,191 + QEN71_RS44605 0.11 -1.3
388,191 + QEN71_RS44605 0.11 -0.1
388,192 - QEN71_RS44605 0.11 -1.0
388,192 - QEN71_RS44605 0.11 -0.2
388,192 - QEN71_RS44605 0.11 -0.5
388,251 + QEN71_RS44605 0.15 -1.6
388,252 - QEN71_RS44605 0.16 -0.3
388,341 - QEN71_RS44605 0.23 +0.1
388,341 - QEN71_RS44605 0.23 -0.9
388,367 + QEN71_RS44605 0.25 +2.2
388,429 + QEN71_RS44605 0.30 -0.9
388,429 + QEN71_RS44605 0.30 -0.8
388,429 + QEN71_RS44605 0.30 -0.2
388,429 + QEN71_RS44605 0.30 -1.2
388,430 - QEN71_RS44605 0.30 -0.6
388,430 - QEN71_RS44605 0.30 -2.2
388,499 + QEN71_RS44605 0.35 -1.8
388,499 + QEN71_RS44605 0.35 +0.2
388,500 - QEN71_RS44605 0.35 -0.8
388,500 - QEN71_RS44605 0.35 -0.9
388,530 + QEN71_RS44605 0.38 -2.0
388,530 + QEN71_RS44605 0.38 -0.4
388,531 - QEN71_RS44605 0.38 -0.3
388,613 - QEN71_RS44605 0.44 +1.2
388,655 + QEN71_RS44605 0.48 -0.7
388,656 - QEN71_RS44605 0.48 -0.2
388,710 + QEN71_RS44605 0.52 +0.8
388,770 + QEN71_RS44605 0.57 +0.0
388,771 - QEN71_RS44605 0.57 -2.1
388,773 + QEN71_RS44605 0.57 +0.2

Or see this region's nucleotide sequence