Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42205 and QEN71_RS42210 are separated by 144 nucleotides QEN71_RS42210 and QEN71_RS42215 are separated by 73 nucleotides QEN71_RS42215 and QEN71_RS42220 overlap by 4 nucleotides
QEN71_RS42205: QEN71_RS42205 - nitrogen fixation protein NifQ, at 523,355 to 523,927
_RS42205
QEN71_RS42210: QEN71_RS42210 - hypothetical protein, at 524,072 to 524,557
_RS42210
QEN71_RS42215: QEN71_RS42215 - 4Fe-4S dicluster domain-containing protein, at 524,631 to 524,930
_RS42215
QEN71_RS42220: QEN71_RS42220 - FAD-dependent monooxygenase, at 524,927 to 526,237
_RS42220
Position (kb) 524
525 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 523.675 kb on + strand, within QEN71_RS42205 at 523.675 kb on + strand, within QEN71_RS42205 at 523.676 kb on - strand, within QEN71_RS42205 at 523.676 kb on - strand, within QEN71_RS42205 at 523.676 kb on - strand, within QEN71_RS42205 at 523.834 kb on + strand, within QEN71_RS42205 at 523.864 kb on + strand, within QEN71_RS42205 at 524.025 kb on + strand at 524.025 kb on + strand at 524.025 kb on + strand at 524.026 kb on - strand at 524.026 kb on - strand at 524.026 kb on - strand at 524.026 kb on - strand at 524.054 kb on - strand at 524.054 kb on - strand at 524.054 kb on - strand at 524.074 kb on - strand at 524.147 kb on + strand, within QEN71_RS42210 at 524.147 kb on + strand, within QEN71_RS42210 at 524.147 kb on + strand, within QEN71_RS42210 at 524.383 kb on + strand, within QEN71_RS42210 at 524.394 kb on + strand, within QEN71_RS42210 at 524.394 kb on + strand, within QEN71_RS42210 at 524.394 kb on + strand, within QEN71_RS42210 at 524.394 kb on + strand, within QEN71_RS42210 at 524.394 kb on + strand, within QEN71_RS42210 at 524.395 kb on - strand, within QEN71_RS42210 at 524.397 kb on + strand, within QEN71_RS42210 at 524.492 kb on + strand, within QEN71_RS42210 at 524.492 kb on + strand, within QEN71_RS42210 at 524.558 kb on + strand at 524.558 kb on + strand at 524.559 kb on - strand at 524.617 kb on + strand at 524.704 kb on - strand, within QEN71_RS42215 at 524.745 kb on + strand, within QEN71_RS42215 at 524.793 kb on + strand, within QEN71_RS42215 at 524.794 kb on - strand, within QEN71_RS42215 at 524.794 kb on - strand, within QEN71_RS42215 at 524.953 kb on - strand at 524.953 kb on - strand at 525.004 kb on + strand at 525.004 kb on + strand at 525.005 kb on - strand at 525.005 kb on - strand at 525.005 kb on - strand at 525.005 kb on - strand at 525.056 kb on - strand at 525.084 kb on + strand, within QEN71_RS42220 at 525.084 kb on + strand, within QEN71_RS42220 at 525.084 kb on + strand, within QEN71_RS42220 at 525.085 kb on - strand, within QEN71_RS42220 at 525.085 kb on - strand, within QEN71_RS42220 at 525.085 kb on - strand, within QEN71_RS42220 at 525.085 kb on - strand, within QEN71_RS42220 at 525.141 kb on + strand, within QEN71_RS42220 at 525.141 kb on + strand, within QEN71_RS42220 at 525.142 kb on - strand, within QEN71_RS42220 at 525.142 kb on - strand, within QEN71_RS42220 at 525.143 kb on + strand, within QEN71_RS42220 at 525.143 kb on + strand, within QEN71_RS42220 at 525.143 kb on + strand, within QEN71_RS42220 at 525.143 kb on + strand, within QEN71_RS42220 at 525.182 kb on - strand, within QEN71_RS42220 at 525.192 kb on - strand, within QEN71_RS42220 at 525.397 kb on - strand, within QEN71_RS42220 at 525.397 kb on - strand, within QEN71_RS42220 at 525.476 kb on + strand, within QEN71_RS42220 at 525.549 kb on + strand, within QEN71_RS42220 at 525.549 kb on + strand, within QEN71_RS42220 at 525.550 kb on - strand, within QEN71_RS42220 at 525.863 kb on + strand, within QEN71_RS42220 at 525.864 kb on - strand, within QEN71_RS42220
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 523,675 + QEN71_RS42205 0.56 +0.7 523,675 + QEN71_RS42205 0.56 -0.3 523,676 - QEN71_RS42205 0.56 -1.6 523,676 - QEN71_RS42205 0.56 +0.8 523,676 - QEN71_RS42205 0.56 -0.5 523,834 + QEN71_RS42205 0.84 +3.5 523,864 + QEN71_RS42205 0.89 -0.0 524,025 + -0.5 524,025 + -1.9 524,025 + -2.1 524,026 - +0.4 524,026 - -0.9 524,026 - -0.3 524,026 - -1.5 524,054 - +0.1 524,054 - -0.3 524,054 - +0.3 524,074 - -0.7 524,147 + QEN71_RS42210 0.15 -0.9 524,147 + QEN71_RS42210 0.15 +0.3 524,147 + QEN71_RS42210 0.15 +0.6 524,383 + QEN71_RS42210 0.64 +3.1 524,394 + QEN71_RS42210 0.66 +0.6 524,394 + QEN71_RS42210 0.66 -0.9 524,394 + QEN71_RS42210 0.66 -0.5 524,394 + QEN71_RS42210 0.66 +0.3 524,394 + QEN71_RS42210 0.66 -0.5 524,395 - QEN71_RS42210 0.66 -2.3 524,397 + QEN71_RS42210 0.67 -0.0 524,492 + QEN71_RS42210 0.86 +0.1 524,492 + QEN71_RS42210 0.86 -1.1 524,558 + +1.0 524,558 + +0.0 524,559 - +1.3 524,617 + -0.7 524,704 - QEN71_RS42215 0.24 -6.3 524,745 + QEN71_RS42215 0.38 -0.9 524,793 + QEN71_RS42215 0.54 -0.3 524,794 - QEN71_RS42215 0.54 -2.3 524,794 - QEN71_RS42215 0.54 -4.0 524,953 - -6.0 524,953 - -4.9 525,004 + -1.1 525,004 + -0.0 525,005 - -3.8 525,005 - -4.3 525,005 - -5.8 525,005 - -3.0 525,056 - -5.7 525,084 + QEN71_RS42220 0.12 +0.0 525,084 + QEN71_RS42220 0.12 -0.2 525,084 + QEN71_RS42220 0.12 -1.7 525,085 - QEN71_RS42220 0.12 -6.1 525,085 - QEN71_RS42220 0.12 -2.2 525,085 - QEN71_RS42220 0.12 -4.9 525,085 - QEN71_RS42220 0.12 -3.7 525,141 + QEN71_RS42220 0.16 -0.3 525,141 + QEN71_RS42220 0.16 -0.3 525,142 - QEN71_RS42220 0.16 -2.7 525,142 - QEN71_RS42220 0.16 -5.1 525,143 + QEN71_RS42220 0.16 -2.2 525,143 + QEN71_RS42220 0.16 -0.3 525,143 + QEN71_RS42220 0.16 -2.5 525,143 + QEN71_RS42220 0.16 +0.1 525,182 - QEN71_RS42220 0.19 -0.3 525,192 - QEN71_RS42220 0.20 -4.4 525,397 - QEN71_RS42220 0.36 -4.3 525,397 - QEN71_RS42220 0.36 -2.2 525,476 + QEN71_RS42220 0.42 +0.5 525,549 + QEN71_RS42220 0.47 -0.1 525,549 + QEN71_RS42220 0.47 -1.5 525,550 - QEN71_RS42220 0.48 -5.2 525,863 + QEN71_RS42220 0.71 -0.2 525,864 - QEN71_RS42220 0.71 -6.0
Or see this region's nucleotide sequence