Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41355 and QEN71_RS41360 are separated by 4 nucleotides QEN71_RS41360 and QEN71_RS41365 are separated by 121 nucleotides
QEN71_RS41355: QEN71_RS41355 - branched-chain amino acid ABC transporter substrate-binding protein, at 347,537 to 348,673
_RS41355
QEN71_RS41360: QEN71_RS41360 - Lrp/AsnC family transcriptional regulator, at 348,678 to 349,154
_RS41360
QEN71_RS41365: QEN71_RS41365 - M20 aminoacylase family protein, at 349,276 to 350,439
_RS41365
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 347.885 kb on + strand, within QEN71_RS41355 at 348.011 kb on + strand, within QEN71_RS41355 at 348.011 kb on + strand, within QEN71_RS41355 at 348.011 kb on + strand, within QEN71_RS41355 at 348.011 kb on + strand, within QEN71_RS41355 at 348.012 kb on - strand, within QEN71_RS41355 at 348.012 kb on - strand, within QEN71_RS41355 at 348.012 kb on - strand, within QEN71_RS41355 at 348.012 kb on - strand, within QEN71_RS41355 at 348.068 kb on + strand, within QEN71_RS41355 at 348.068 kb on + strand, within QEN71_RS41355 at 348.356 kb on + strand, within QEN71_RS41355 at 348.452 kb on + strand, within QEN71_RS41355 at 348.452 kb on + strand, within QEN71_RS41355 at 348.452 kb on + strand, within QEN71_RS41355 at 348.452 kb on + strand, within QEN71_RS41355 at 348.468 kb on - strand, within QEN71_RS41355 at 348.468 kb on - strand, within QEN71_RS41355 at 348.531 kb on - strand, within QEN71_RS41355 at 348.531 kb on - strand, within QEN71_RS41355 at 348.593 kb on - strand at 348.799 kb on + strand, within QEN71_RS41360 at 348.799 kb on + strand, within QEN71_RS41360 at 348.800 kb on - strand, within QEN71_RS41360 at 348.800 kb on - strand, within QEN71_RS41360 at 348.825 kb on + strand, within QEN71_RS41360 at 348.826 kb on - strand, within QEN71_RS41360 at 348.856 kb on + strand, within QEN71_RS41360 at 348.857 kb on - strand, within QEN71_RS41360 at 348.857 kb on - strand, within QEN71_RS41360 at 348.857 kb on - strand, within QEN71_RS41360 at 348.859 kb on + strand, within QEN71_RS41360 at 348.860 kb on - strand, within QEN71_RS41360 at 348.964 kb on + strand, within QEN71_RS41360 at 348.965 kb on - strand, within QEN71_RS41360 at 348.997 kb on + strand, within QEN71_RS41360 at 348.997 kb on + strand, within QEN71_RS41360 at 348.997 kb on + strand, within QEN71_RS41360 at 348.998 kb on - strand, within QEN71_RS41360 at 348.998 kb on - strand, within QEN71_RS41360 at 349.008 kb on + strand, within QEN71_RS41360 at 349.008 kb on + strand, within QEN71_RS41360 at 349.008 kb on + strand, within QEN71_RS41360 at 349.009 kb on - strand, within QEN71_RS41360 at 349.009 kb on - strand, within QEN71_RS41360 at 349.009 kb on - strand, within QEN71_RS41360 at 349.214 kb on + strand at 349.236 kb on - strand at 349.318 kb on + strand at 349.319 kb on - strand at 349.319 kb on - strand at 349.319 kb on - strand at 349.360 kb on - strand at 349.360 kb on - strand at 349.369 kb on + strand at 349.370 kb on - strand at 349.370 kb on - strand at 349.503 kb on + strand, within QEN71_RS41365 at 349.504 kb on - strand, within QEN71_RS41365 at 349.968 kb on + strand, within QEN71_RS41365 at 349.981 kb on - strand, within QEN71_RS41365 at 350.088 kb on - strand, within QEN71_RS41365 at 350.088 kb on - strand, within QEN71_RS41365 at 350.135 kb on - strand, within QEN71_RS41365
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 347,885 + QEN71_RS41355 0.31 -1.1 348,011 + QEN71_RS41355 0.42 +0.7 348,011 + QEN71_RS41355 0.42 -0.6 348,011 + QEN71_RS41355 0.42 -0.1 348,011 + QEN71_RS41355 0.42 +0.0 348,012 - QEN71_RS41355 0.42 +0.0 348,012 - QEN71_RS41355 0.42 -0.8 348,012 - QEN71_RS41355 0.42 -0.2 348,012 - QEN71_RS41355 0.42 -0.1 348,068 + QEN71_RS41355 0.47 +0.5 348,068 + QEN71_RS41355 0.47 -2.9 348,356 + QEN71_RS41355 0.72 +0.4 348,452 + QEN71_RS41355 0.80 +0.4 348,452 + QEN71_RS41355 0.80 -0.5 348,452 + QEN71_RS41355 0.80 -0.6 348,452 + QEN71_RS41355 0.80 -0.4 348,468 - QEN71_RS41355 0.82 +0.6 348,468 - QEN71_RS41355 0.82 +0.9 348,531 - QEN71_RS41355 0.87 -0.2 348,531 - QEN71_RS41355 0.87 +0.9 348,593 - -0.5 348,799 + QEN71_RS41360 0.25 +0.2 348,799 + QEN71_RS41360 0.25 +0.1 348,800 - QEN71_RS41360 0.26 -0.8 348,800 - QEN71_RS41360 0.26 +0.5 348,825 + QEN71_RS41360 0.31 +0.3 348,826 - QEN71_RS41360 0.31 -0.8 348,856 + QEN71_RS41360 0.37 -0.1 348,857 - QEN71_RS41360 0.38 +0.8 348,857 - QEN71_RS41360 0.38 +0.7 348,857 - QEN71_RS41360 0.38 +0.4 348,859 + QEN71_RS41360 0.38 -1.2 348,860 - QEN71_RS41360 0.38 +0.7 348,964 + QEN71_RS41360 0.60 +0.5 348,965 - QEN71_RS41360 0.60 -0.4 348,997 + QEN71_RS41360 0.67 +0.3 348,997 + QEN71_RS41360 0.67 +0.8 348,997 + QEN71_RS41360 0.67 -0.1 348,998 - QEN71_RS41360 0.67 -1.6 348,998 - QEN71_RS41360 0.67 +0.6 349,008 + QEN71_RS41360 0.69 -0.9 349,008 + QEN71_RS41360 0.69 -1.3 349,008 + QEN71_RS41360 0.69 +0.0 349,009 - QEN71_RS41360 0.69 -0.3 349,009 - QEN71_RS41360 0.69 +0.0 349,009 - QEN71_RS41360 0.69 +1.0 349,214 + -0.8 349,236 - +0.5 349,318 + +0.2 349,319 - -0.2 349,319 - -0.0 349,319 - -0.7 349,360 - -0.9 349,360 - -0.9 349,369 + -1.8 349,370 - -1.0 349,370 - +0.2 349,503 + QEN71_RS41365 0.20 -0.7 349,504 - QEN71_RS41365 0.20 -0.6 349,968 + QEN71_RS41365 0.59 +0.0 349,981 - QEN71_RS41365 0.61 +0.8 350,088 - QEN71_RS41365 0.70 +0.7 350,088 - QEN71_RS41365 0.70 -0.8 350,135 - QEN71_RS41365 0.74 -0.5
Or see this region's nucleotide sequence