Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39365 and QEN71_RS39370 are separated by 45 nucleotides QEN71_RS39370 and QEN71_RS39375 are separated by 43 nucleotides
QEN71_RS39365: QEN71_RS39365 - DHA2 family efflux MFS transporter permease subunit, at 2,206,597 to 2,208,153
_RS39365
QEN71_RS39370: QEN71_RS39370 - efflux transporter outer membrane subunit, at 2,208,199 to 2,209,689
_RS39370
QEN71_RS39375: QEN71_RS39375 - HlyD family efflux transporter periplasmic adaptor subunit, at 2,209,733 to 2,211,037
_RS39375
Position (kb)
2208
2209
2210 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2207.480 kb on + strand, within QEN71_RS39365 at 2207.729 kb on + strand, within QEN71_RS39365 at 2208.336 kb on + strand at 2208.336 kb on + strand at 2208.336 kb on + strand at 2208.571 kb on + strand, within QEN71_RS39370 at 2208.571 kb on + strand, within QEN71_RS39370 at 2208.571 kb on + strand, within QEN71_RS39370 at 2208.572 kb on - strand, within QEN71_RS39370 at 2208.572 kb on - strand, within QEN71_RS39370 at 2208.773 kb on - strand, within QEN71_RS39370 at 2208.773 kb on - strand, within QEN71_RS39370 at 2208.883 kb on - strand, within QEN71_RS39370 at 2209.055 kb on + strand, within QEN71_RS39370 at 2209.055 kb on + strand, within QEN71_RS39370 at 2209.056 kb on - strand, within QEN71_RS39370 at 2209.056 kb on - strand, within QEN71_RS39370 at 2209.172 kb on - strand, within QEN71_RS39370 at 2209.339 kb on + strand, within QEN71_RS39370 at 2209.339 kb on + strand, within QEN71_RS39370 at 2209.340 kb on - strand, within QEN71_RS39370 at 2209.354 kb on + strand, within QEN71_RS39370 at 2209.354 kb on + strand, within QEN71_RS39370 at 2209.354 kb on + strand, within QEN71_RS39370 at 2209.354 kb on + strand, within QEN71_RS39370 at 2209.355 kb on - strand, within QEN71_RS39370 at 2209.355 kb on - strand, within QEN71_RS39370 at 2209.492 kb on + strand, within QEN71_RS39370 at 2209.493 kb on - strand, within QEN71_RS39370 at 2209.631 kb on - strand at 2209.869 kb on - strand, within QEN71_RS39375 at 2209.877 kb on + strand, within QEN71_RS39375 at 2209.878 kb on - strand, within QEN71_RS39375 at 2209.878 kb on - strand, within QEN71_RS39375 at 2209.881 kb on - strand, within QEN71_RS39375 at 2209.899 kb on - strand, within QEN71_RS39375 at 2209.922 kb on + strand, within QEN71_RS39375 at 2209.922 kb on + strand, within QEN71_RS39375 at 2209.923 kb on - strand, within QEN71_RS39375 at 2209.923 kb on - strand, within QEN71_RS39375 at 2210.130 kb on - strand, within QEN71_RS39375 at 2210.234 kb on - strand, within QEN71_RS39375 at 2210.429 kb on + strand, within QEN71_RS39375 at 2210.592 kb on - strand, within QEN71_RS39375 at 2210.609 kb on + strand, within QEN71_RS39375 at 2210.609 kb on + strand, within QEN71_RS39375
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 2,207,480 + QEN71_RS39365 0.57 -0.9 2,207,729 + QEN71_RS39365 0.73 -0.1 2,208,336 + -0.5 2,208,336 + +0.4 2,208,336 + +1.0 2,208,571 + QEN71_RS39370 0.25 +0.7 2,208,571 + QEN71_RS39370 0.25 +1.0 2,208,571 + QEN71_RS39370 0.25 -0.8 2,208,572 - QEN71_RS39370 0.25 +0.4 2,208,572 - QEN71_RS39370 0.25 +1.3 2,208,773 - QEN71_RS39370 0.38 -0.7 2,208,773 - QEN71_RS39370 0.38 -1.0 2,208,883 - QEN71_RS39370 0.46 -0.2 2,209,055 + QEN71_RS39370 0.57 -1.5 2,209,055 + QEN71_RS39370 0.57 -0.8 2,209,056 - QEN71_RS39370 0.57 -1.6 2,209,056 - QEN71_RS39370 0.57 -0.8 2,209,172 - QEN71_RS39370 0.65 -0.8 2,209,339 + QEN71_RS39370 0.76 -1.2 2,209,339 + QEN71_RS39370 0.76 +0.1 2,209,340 - QEN71_RS39370 0.77 +0.2 2,209,354 + QEN71_RS39370 0.77 -0.7 2,209,354 + QEN71_RS39370 0.77 +1.3 2,209,354 + QEN71_RS39370 0.77 +0.4 2,209,354 + QEN71_RS39370 0.77 +0.1 2,209,355 - QEN71_RS39370 0.78 -1.6 2,209,355 - QEN71_RS39370 0.78 -0.8 2,209,492 + QEN71_RS39370 0.87 -0.3 2,209,493 - QEN71_RS39370 0.87 -1.0 2,209,631 - +0.3 2,209,869 - QEN71_RS39375 0.10 +0.3 2,209,877 + QEN71_RS39375 0.11 -0.0 2,209,878 - QEN71_RS39375 0.11 -0.4 2,209,878 - QEN71_RS39375 0.11 +1.1 2,209,881 - QEN71_RS39375 0.11 -0.8 2,209,899 - QEN71_RS39375 0.13 +1.8 2,209,922 + QEN71_RS39375 0.14 +0.5 2,209,922 + QEN71_RS39375 0.14 -2.7 2,209,923 - QEN71_RS39375 0.15 +0.2 2,209,923 - QEN71_RS39375 0.15 -2.9 2,210,130 - QEN71_RS39375 0.30 -0.4 2,210,234 - QEN71_RS39375 0.38 -0.6 2,210,429 + QEN71_RS39375 0.53 -0.5 2,210,592 - QEN71_RS39375 0.66 -0.7 2,210,609 + QEN71_RS39375 0.67 +0.9 2,210,609 + QEN71_RS39375 0.67 -0.1
Or see this region's nucleotide sequence