Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39370

Experiment: Motility_outer_sample_with_outgrowth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS39365 and QEN71_RS39370 are separated by 45 nucleotidesQEN71_RS39370 and QEN71_RS39375 are separated by 43 nucleotides QEN71_RS39365: QEN71_RS39365 - DHA2 family efflux MFS transporter permease subunit, at 2,206,597 to 2,208,153 _RS39365 QEN71_RS39370: QEN71_RS39370 - efflux transporter outer membrane subunit, at 2,208,199 to 2,209,689 _RS39370 QEN71_RS39375: QEN71_RS39375 - HlyD family efflux transporter periplasmic adaptor subunit, at 2,209,733 to 2,211,037 _RS39375 Position (kb) 2208 2209 2210Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2207.480 kb on + strand, within QEN71_RS39365at 2207.729 kb on + strand, within QEN71_RS39365at 2208.336 kb on + strandat 2208.336 kb on + strandat 2208.336 kb on + strandat 2208.571 kb on + strand, within QEN71_RS39370at 2208.571 kb on + strand, within QEN71_RS39370at 2208.571 kb on + strand, within QEN71_RS39370at 2208.572 kb on - strand, within QEN71_RS39370at 2208.572 kb on - strand, within QEN71_RS39370at 2208.773 kb on - strand, within QEN71_RS39370at 2208.773 kb on - strand, within QEN71_RS39370at 2208.883 kb on - strand, within QEN71_RS39370at 2209.055 kb on + strand, within QEN71_RS39370at 2209.055 kb on + strand, within QEN71_RS39370at 2209.056 kb on - strand, within QEN71_RS39370at 2209.056 kb on - strand, within QEN71_RS39370at 2209.172 kb on - strand, within QEN71_RS39370at 2209.339 kb on + strand, within QEN71_RS39370at 2209.339 kb on + strand, within QEN71_RS39370at 2209.340 kb on - strand, within QEN71_RS39370at 2209.354 kb on + strand, within QEN71_RS39370at 2209.354 kb on + strand, within QEN71_RS39370at 2209.354 kb on + strand, within QEN71_RS39370at 2209.354 kb on + strand, within QEN71_RS39370at 2209.355 kb on - strand, within QEN71_RS39370at 2209.355 kb on - strand, within QEN71_RS39370at 2209.492 kb on + strand, within QEN71_RS39370at 2209.493 kb on - strand, within QEN71_RS39370at 2209.631 kb on - strandat 2209.869 kb on - strand, within QEN71_RS39375at 2209.877 kb on + strand, within QEN71_RS39375at 2209.878 kb on - strand, within QEN71_RS39375at 2209.878 kb on - strand, within QEN71_RS39375at 2209.881 kb on - strand, within QEN71_RS39375at 2209.899 kb on - strand, within QEN71_RS39375at 2209.922 kb on + strand, within QEN71_RS39375at 2209.922 kb on + strand, within QEN71_RS39375at 2209.923 kb on - strand, within QEN71_RS39375at 2209.923 kb on - strand, within QEN71_RS39375at 2210.130 kb on - strand, within QEN71_RS39375at 2210.234 kb on - strand, within QEN71_RS39375at 2210.429 kb on + strand, within QEN71_RS39375at 2210.592 kb on - strand, within QEN71_RS39375at 2210.609 kb on + strand, within QEN71_RS39375at 2210.609 kb on + strand, within QEN71_RS39375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
remove
2,207,480 + QEN71_RS39365 0.57 -0.9
2,207,729 + QEN71_RS39365 0.73 -0.1
2,208,336 + -0.5
2,208,336 + +0.4
2,208,336 + +1.0
2,208,571 + QEN71_RS39370 0.25 +0.7
2,208,571 + QEN71_RS39370 0.25 +1.0
2,208,571 + QEN71_RS39370 0.25 -0.8
2,208,572 - QEN71_RS39370 0.25 +0.4
2,208,572 - QEN71_RS39370 0.25 +1.3
2,208,773 - QEN71_RS39370 0.38 -0.7
2,208,773 - QEN71_RS39370 0.38 -1.0
2,208,883 - QEN71_RS39370 0.46 -0.2
2,209,055 + QEN71_RS39370 0.57 -1.5
2,209,055 + QEN71_RS39370 0.57 -0.8
2,209,056 - QEN71_RS39370 0.57 -1.6
2,209,056 - QEN71_RS39370 0.57 -0.8
2,209,172 - QEN71_RS39370 0.65 -0.8
2,209,339 + QEN71_RS39370 0.76 -1.2
2,209,339 + QEN71_RS39370 0.76 +0.1
2,209,340 - QEN71_RS39370 0.77 +0.2
2,209,354 + QEN71_RS39370 0.77 -0.7
2,209,354 + QEN71_RS39370 0.77 +1.3
2,209,354 + QEN71_RS39370 0.77 +0.4
2,209,354 + QEN71_RS39370 0.77 +0.1
2,209,355 - QEN71_RS39370 0.78 -1.6
2,209,355 - QEN71_RS39370 0.78 -0.8
2,209,492 + QEN71_RS39370 0.87 -0.3
2,209,493 - QEN71_RS39370 0.87 -1.0
2,209,631 - +0.3
2,209,869 - QEN71_RS39375 0.10 +0.3
2,209,877 + QEN71_RS39375 0.11 -0.0
2,209,878 - QEN71_RS39375 0.11 -0.4
2,209,878 - QEN71_RS39375 0.11 +1.1
2,209,881 - QEN71_RS39375 0.11 -0.8
2,209,899 - QEN71_RS39375 0.13 +1.8
2,209,922 + QEN71_RS39375 0.14 +0.5
2,209,922 + QEN71_RS39375 0.14 -2.7
2,209,923 - QEN71_RS39375 0.15 +0.2
2,209,923 - QEN71_RS39375 0.15 -2.9
2,210,130 - QEN71_RS39375 0.30 -0.4
2,210,234 - QEN71_RS39375 0.38 -0.6
2,210,429 + QEN71_RS39375 0.53 -0.5
2,210,592 - QEN71_RS39375 0.66 -0.7
2,210,609 + QEN71_RS39375 0.67 +0.9
2,210,609 + QEN71_RS39375 0.67 -0.1

Or see this region's nucleotide sequence