Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35030

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35025 and QEN71_RS35030 are separated by 8 nucleotidesQEN71_RS35030 and QEN71_RS35035 are separated by 715 nucleotides QEN71_RS35025: QEN71_RS35025 - efflux RND transporter permease subunit, at 1,191,852 to 1,195,049 _RS35025 QEN71_RS35030: QEN71_RS35030 - efflux transporter outer membrane subunit, at 1,195,058 to 1,196,713 _RS35030 QEN71_RS35035: QEN71_RS35035 - outer membrane protein assembly factor BamA, at 1,197,429 to 1,199,732 _RS35035 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1194.123 kb on + strand, within QEN71_RS35025at 1194.123 kb on + strand, within QEN71_RS35025at 1194.123 kb on + strand, within QEN71_RS35025at 1194.123 kb on + strand, within QEN71_RS35025at 1194.123 kb on + strand, within QEN71_RS35025at 1194.123 kb on + strand, within QEN71_RS35025at 1194.123 kb on + strand, within QEN71_RS35025at 1194.124 kb on - strand, within QEN71_RS35025at 1194.124 kb on - strand, within QEN71_RS35025at 1194.124 kb on - strand, within QEN71_RS35025at 1194.124 kb on - strand, within QEN71_RS35025at 1194.124 kb on - strand, within QEN71_RS35025at 1194.124 kb on - strand, within QEN71_RS35025at 1194.219 kb on + strand, within QEN71_RS35025at 1194.219 kb on + strand, within QEN71_RS35025at 1194.219 kb on + strand, within QEN71_RS35025at 1194.220 kb on - strand, within QEN71_RS35025at 1194.220 kb on - strand, within QEN71_RS35025at 1194.220 kb on - strand, within QEN71_RS35025at 1194.220 kb on - strand, within QEN71_RS35025at 1194.282 kb on + strand, within QEN71_RS35025at 1194.306 kb on + strand, within QEN71_RS35025at 1194.306 kb on + strand, within QEN71_RS35025at 1194.307 kb on - strand, within QEN71_RS35025at 1194.307 kb on - strand, within QEN71_RS35025at 1194.525 kb on + strand, within QEN71_RS35025at 1194.526 kb on - strand, within QEN71_RS35025at 1194.627 kb on + strand, within QEN71_RS35025at 1194.628 kb on - strand, within QEN71_RS35025at 1194.628 kb on - strand, within QEN71_RS35025at 1195.057 kb on + strandat 1195.057 kb on + strandat 1195.058 kb on - strandat 1195.174 kb on - strandat 1195.174 kb on - strandat 1195.315 kb on + strand, within QEN71_RS35030at 1195.316 kb on - strand, within QEN71_RS35030at 1195.769 kb on + strand, within QEN71_RS35030at 1195.769 kb on + strand, within QEN71_RS35030at 1195.769 kb on + strand, within QEN71_RS35030at 1195.769 kb on + strand, within QEN71_RS35030at 1195.769 kb on + strand, within QEN71_RS35030at 1195.769 kb on + strand, within QEN71_RS35030at 1195.770 kb on - strand, within QEN71_RS35030at 1195.770 kb on - strand, within QEN71_RS35030at 1195.770 kb on - strand, within QEN71_RS35030at 1195.770 kb on - strand, within QEN71_RS35030at 1195.772 kb on + strand, within QEN71_RS35030at 1195.772 kb on + strand, within QEN71_RS35030at 1195.772 kb on + strand, within QEN71_RS35030at 1195.772 kb on + strand, within QEN71_RS35030at 1195.773 kb on - strand, within QEN71_RS35030at 1195.773 kb on - strand, within QEN71_RS35030at 1195.773 kb on - strand, within QEN71_RS35030at 1195.773 kb on - strand, within QEN71_RS35030at 1195.773 kb on - strand, within QEN71_RS35030at 1195.773 kb on - strand, within QEN71_RS35030at 1195.773 kb on - strand, within QEN71_RS35030at 1195.865 kb on + strand, within QEN71_RS35030at 1195.865 kb on + strand, within QEN71_RS35030at 1195.865 kb on + strand, within QEN71_RS35030at 1195.958 kb on + strand, within QEN71_RS35030at 1196.129 kb on + strand, within QEN71_RS35030at 1196.138 kb on + strand, within QEN71_RS35030at 1196.138 kb on + strand, within QEN71_RS35030at 1196.138 kb on + strand, within QEN71_RS35030at 1196.138 kb on + strand, within QEN71_RS35030at 1196.138 kb on + strand, within QEN71_RS35030at 1196.139 kb on - strand, within QEN71_RS35030at 1196.496 kb on - strand, within QEN71_RS35030at 1196.601 kb on - strandat 1196.728 kb on - strandat 1196.794 kb on - strandat 1196.957 kb on - strandat 1197.085 kb on + strandat 1197.085 kb on + strandat 1197.086 kb on - strandat 1197.165 kb on - strandat 1197.342 kb on - strandat 1197.425 kb on + strandat 1197.425 kb on + strandat 1197.425 kb on + strandat 1197.425 kb on + strandat 1197.425 kb on + strandat 1197.426 kb on - strandat 1197.426 kb on - strandat 1197.426 kb on - strandat 1197.501 kb on + strandat 1197.502 kb on - strandat 1197.524 kb on - strandat 1197.524 kb on - strandat 1197.580 kb on - strandat 1197.602 kb on + strandat 1197.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,194,123 + QEN71_RS35025 0.71 +0.1
1,194,123 + QEN71_RS35025 0.71 -2.3
1,194,123 + QEN71_RS35025 0.71 -0.3
1,194,123 + QEN71_RS35025 0.71 -3.4
1,194,123 + QEN71_RS35025 0.71 -2.1
1,194,123 + QEN71_RS35025 0.71 -4.9
1,194,123 + QEN71_RS35025 0.71 -2.0
1,194,124 - QEN71_RS35025 0.71 -2.7
1,194,124 - QEN71_RS35025 0.71 -2.5
1,194,124 - QEN71_RS35025 0.71 -1.7
1,194,124 - QEN71_RS35025 0.71 -0.7
1,194,124 - QEN71_RS35025 0.71 +0.1
1,194,124 - QEN71_RS35025 0.71 -0.5
1,194,219 + QEN71_RS35025 0.74 -1.8
1,194,219 + QEN71_RS35025 0.74 -0.7
1,194,219 + QEN71_RS35025 0.74 -1.4
1,194,220 - QEN71_RS35025 0.74 -3.9
1,194,220 - QEN71_RS35025 0.74 -1.9
1,194,220 - QEN71_RS35025 0.74 -1.3
1,194,220 - QEN71_RS35025 0.74 -2.4
1,194,282 + QEN71_RS35025 0.76 -2.6
1,194,306 + QEN71_RS35025 0.77 -3.8
1,194,306 + QEN71_RS35025 0.77 -0.3
1,194,307 - QEN71_RS35025 0.77 -3.9
1,194,307 - QEN71_RS35025 0.77 -0.3
1,194,525 + QEN71_RS35025 0.84 -3.1
1,194,526 - QEN71_RS35025 0.84 -1.8
1,194,627 + QEN71_RS35025 0.87 -2.5
1,194,628 - QEN71_RS35025 0.87 -2.6
1,194,628 - QEN71_RS35025 0.87 -2.3
1,195,057 + -0.5
1,195,057 + +0.1
1,195,058 - -0.7
1,195,174 - -2.7
1,195,174 - -1.6
1,195,315 + QEN71_RS35030 0.16 -2.5
1,195,316 - QEN71_RS35030 0.16 -1.3
1,195,769 + QEN71_RS35030 0.43 -2.9
1,195,769 + QEN71_RS35030 0.43 -2.6
1,195,769 + QEN71_RS35030 0.43 -3.4
1,195,769 + QEN71_RS35030 0.43 -2.3
1,195,769 + QEN71_RS35030 0.43 -3.4
1,195,769 + QEN71_RS35030 0.43 -0.9
1,195,770 - QEN71_RS35030 0.43 -0.7
1,195,770 - QEN71_RS35030 0.43 -3.7
1,195,770 - QEN71_RS35030 0.43 -3.6
1,195,770 - QEN71_RS35030 0.43 -2.6
1,195,772 + QEN71_RS35030 0.43 +0.1
1,195,772 + QEN71_RS35030 0.43 -1.5
1,195,772 + QEN71_RS35030 0.43 -2.5
1,195,772 + QEN71_RS35030 0.43 -0.5
1,195,773 - QEN71_RS35030 0.43 -3.4
1,195,773 - QEN71_RS35030 0.43 -3.1
1,195,773 - QEN71_RS35030 0.43 -1.3
1,195,773 - QEN71_RS35030 0.43 -3.3
1,195,773 - QEN71_RS35030 0.43 +0.1
1,195,773 - QEN71_RS35030 0.43 -1.9
1,195,773 - QEN71_RS35030 0.43 -1.9
1,195,865 + QEN71_RS35030 0.49 -1.2
1,195,865 + QEN71_RS35030 0.49 -2.6
1,195,865 + QEN71_RS35030 0.49 -1.5
1,195,958 + QEN71_RS35030 0.54 +0.1
1,196,129 + QEN71_RS35030 0.65 -2.9
1,196,138 + QEN71_RS35030 0.65 -2.7
1,196,138 + QEN71_RS35030 0.65 +1.5
1,196,138 + QEN71_RS35030 0.65 -1.6
1,196,138 + QEN71_RS35030 0.65 -2.3
1,196,138 + QEN71_RS35030 0.65 -1.3
1,196,139 - QEN71_RS35030 0.65 -4.1
1,196,496 - QEN71_RS35030 0.87 -2.2
1,196,601 - -1.2
1,196,728 - -0.7
1,196,794 - -0.5
1,196,957 - -1.0
1,197,085 + -1.1
1,197,085 + -0.6
1,197,086 - +0.4
1,197,165 - -0.1
1,197,342 - +1.1
1,197,425 + +0.7
1,197,425 + +0.8
1,197,425 + +0.2
1,197,425 + -1.9
1,197,425 + -0.2
1,197,426 - +0.3
1,197,426 - +1.6
1,197,426 - -0.7
1,197,501 + +0.1
1,197,502 - +0.1
1,197,524 - +0.3
1,197,524 - +0.1
1,197,580 - +0.1
1,197,602 + -1.4
1,197,646 - +1.1

Or see this region's nucleotide sequence