Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS35025 and QEN71_RS35030 are separated by 8 nucleotides QEN71_RS35030 and QEN71_RS35035 are separated by 715 nucleotides
QEN71_RS35025: QEN71_RS35025 - efflux RND transporter permease subunit, at 1,191,852 to 1,195,049
_RS35025
QEN71_RS35030: QEN71_RS35030 - efflux transporter outer membrane subunit, at 1,195,058 to 1,196,713
_RS35030
QEN71_RS35035: QEN71_RS35035 - outer membrane protein assembly factor BamA, at 1,197,429 to 1,199,732
_RS35035
Position (kb)
1195
1196
1197 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1194.123 kb on + strand, within QEN71_RS35025 at 1194.123 kb on + strand, within QEN71_RS35025 at 1194.123 kb on + strand, within QEN71_RS35025 at 1194.123 kb on + strand, within QEN71_RS35025 at 1194.123 kb on + strand, within QEN71_RS35025 at 1194.123 kb on + strand, within QEN71_RS35025 at 1194.123 kb on + strand, within QEN71_RS35025 at 1194.124 kb on - strand, within QEN71_RS35025 at 1194.124 kb on - strand, within QEN71_RS35025 at 1194.124 kb on - strand, within QEN71_RS35025 at 1194.124 kb on - strand, within QEN71_RS35025 at 1194.124 kb on - strand, within QEN71_RS35025 at 1194.124 kb on - strand, within QEN71_RS35025 at 1194.219 kb on + strand, within QEN71_RS35025 at 1194.219 kb on + strand, within QEN71_RS35025 at 1194.219 kb on + strand, within QEN71_RS35025 at 1194.220 kb on - strand, within QEN71_RS35025 at 1194.220 kb on - strand, within QEN71_RS35025 at 1194.220 kb on - strand, within QEN71_RS35025 at 1194.220 kb on - strand, within QEN71_RS35025 at 1194.282 kb on + strand, within QEN71_RS35025 at 1194.306 kb on + strand, within QEN71_RS35025 at 1194.306 kb on + strand, within QEN71_RS35025 at 1194.307 kb on - strand, within QEN71_RS35025 at 1194.307 kb on - strand, within QEN71_RS35025 at 1194.525 kb on + strand, within QEN71_RS35025 at 1194.526 kb on - strand, within QEN71_RS35025 at 1194.627 kb on + strand, within QEN71_RS35025 at 1194.628 kb on - strand, within QEN71_RS35025 at 1194.628 kb on - strand, within QEN71_RS35025 at 1195.057 kb on + strand at 1195.057 kb on + strand at 1195.058 kb on - strand at 1195.174 kb on - strand at 1195.174 kb on - strand at 1195.315 kb on + strand, within QEN71_RS35030 at 1195.316 kb on - strand, within QEN71_RS35030 at 1195.769 kb on + strand, within QEN71_RS35030 at 1195.769 kb on + strand, within QEN71_RS35030 at 1195.769 kb on + strand, within QEN71_RS35030 at 1195.769 kb on + strand, within QEN71_RS35030 at 1195.769 kb on + strand, within QEN71_RS35030 at 1195.769 kb on + strand, within QEN71_RS35030 at 1195.770 kb on - strand, within QEN71_RS35030 at 1195.770 kb on - strand, within QEN71_RS35030 at 1195.770 kb on - strand, within QEN71_RS35030 at 1195.770 kb on - strand, within QEN71_RS35030 at 1195.772 kb on + strand, within QEN71_RS35030 at 1195.772 kb on + strand, within QEN71_RS35030 at 1195.772 kb on + strand, within QEN71_RS35030 at 1195.772 kb on + strand, within QEN71_RS35030 at 1195.773 kb on - strand, within QEN71_RS35030 at 1195.773 kb on - strand, within QEN71_RS35030 at 1195.773 kb on - strand, within QEN71_RS35030 at 1195.773 kb on - strand, within QEN71_RS35030 at 1195.773 kb on - strand, within QEN71_RS35030 at 1195.773 kb on - strand, within QEN71_RS35030 at 1195.773 kb on - strand, within QEN71_RS35030 at 1195.865 kb on + strand, within QEN71_RS35030 at 1195.865 kb on + strand, within QEN71_RS35030 at 1195.865 kb on + strand, within QEN71_RS35030 at 1195.958 kb on + strand, within QEN71_RS35030 at 1196.129 kb on + strand, within QEN71_RS35030 at 1196.138 kb on + strand, within QEN71_RS35030 at 1196.138 kb on + strand, within QEN71_RS35030 at 1196.138 kb on + strand, within QEN71_RS35030 at 1196.138 kb on + strand, within QEN71_RS35030 at 1196.138 kb on + strand, within QEN71_RS35030 at 1196.139 kb on - strand, within QEN71_RS35030 at 1196.496 kb on - strand, within QEN71_RS35030 at 1196.601 kb on - strand at 1196.728 kb on - strand at 1196.794 kb on - strand at 1196.957 kb on - strand at 1197.085 kb on + strand at 1197.085 kb on + strand at 1197.086 kb on - strand at 1197.165 kb on - strand at 1197.342 kb on - strand at 1197.425 kb on + strand at 1197.425 kb on + strand at 1197.425 kb on + strand at 1197.425 kb on + strand at 1197.425 kb on + strand at 1197.426 kb on - strand at 1197.426 kb on - strand at 1197.426 kb on - strand at 1197.501 kb on + strand at 1197.502 kb on - strand at 1197.524 kb on - strand at 1197.524 kb on - strand at 1197.580 kb on - strand at 1197.602 kb on + strand at 1197.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 1,194,123 + QEN71_RS35025 0.71 +0.1 1,194,123 + QEN71_RS35025 0.71 -2.3 1,194,123 + QEN71_RS35025 0.71 -0.3 1,194,123 + QEN71_RS35025 0.71 -3.4 1,194,123 + QEN71_RS35025 0.71 -2.1 1,194,123 + QEN71_RS35025 0.71 -4.9 1,194,123 + QEN71_RS35025 0.71 -2.0 1,194,124 - QEN71_RS35025 0.71 -2.7 1,194,124 - QEN71_RS35025 0.71 -2.5 1,194,124 - QEN71_RS35025 0.71 -1.7 1,194,124 - QEN71_RS35025 0.71 -0.7 1,194,124 - QEN71_RS35025 0.71 +0.1 1,194,124 - QEN71_RS35025 0.71 -0.5 1,194,219 + QEN71_RS35025 0.74 -1.8 1,194,219 + QEN71_RS35025 0.74 -0.7 1,194,219 + QEN71_RS35025 0.74 -1.4 1,194,220 - QEN71_RS35025 0.74 -3.9 1,194,220 - QEN71_RS35025 0.74 -1.9 1,194,220 - QEN71_RS35025 0.74 -1.3 1,194,220 - QEN71_RS35025 0.74 -2.4 1,194,282 + QEN71_RS35025 0.76 -2.6 1,194,306 + QEN71_RS35025 0.77 -3.8 1,194,306 + QEN71_RS35025 0.77 -0.3 1,194,307 - QEN71_RS35025 0.77 -3.9 1,194,307 - QEN71_RS35025 0.77 -0.3 1,194,525 + QEN71_RS35025 0.84 -3.1 1,194,526 - QEN71_RS35025 0.84 -1.8 1,194,627 + QEN71_RS35025 0.87 -2.5 1,194,628 - QEN71_RS35025 0.87 -2.6 1,194,628 - QEN71_RS35025 0.87 -2.3 1,195,057 + -0.5 1,195,057 + +0.1 1,195,058 - -0.7 1,195,174 - -2.7 1,195,174 - -1.6 1,195,315 + QEN71_RS35030 0.16 -2.5 1,195,316 - QEN71_RS35030 0.16 -1.3 1,195,769 + QEN71_RS35030 0.43 -2.9 1,195,769 + QEN71_RS35030 0.43 -2.6 1,195,769 + QEN71_RS35030 0.43 -3.4 1,195,769 + QEN71_RS35030 0.43 -2.3 1,195,769 + QEN71_RS35030 0.43 -3.4 1,195,769 + QEN71_RS35030 0.43 -0.9 1,195,770 - QEN71_RS35030 0.43 -0.7 1,195,770 - QEN71_RS35030 0.43 -3.7 1,195,770 - QEN71_RS35030 0.43 -3.6 1,195,770 - QEN71_RS35030 0.43 -2.6 1,195,772 + QEN71_RS35030 0.43 +0.1 1,195,772 + QEN71_RS35030 0.43 -1.5 1,195,772 + QEN71_RS35030 0.43 -2.5 1,195,772 + QEN71_RS35030 0.43 -0.5 1,195,773 - QEN71_RS35030 0.43 -3.4 1,195,773 - QEN71_RS35030 0.43 -3.1 1,195,773 - QEN71_RS35030 0.43 -1.3 1,195,773 - QEN71_RS35030 0.43 -3.3 1,195,773 - QEN71_RS35030 0.43 +0.1 1,195,773 - QEN71_RS35030 0.43 -1.9 1,195,773 - QEN71_RS35030 0.43 -1.9 1,195,865 + QEN71_RS35030 0.49 -1.2 1,195,865 + QEN71_RS35030 0.49 -2.6 1,195,865 + QEN71_RS35030 0.49 -1.5 1,195,958 + QEN71_RS35030 0.54 +0.1 1,196,129 + QEN71_RS35030 0.65 -2.9 1,196,138 + QEN71_RS35030 0.65 -2.7 1,196,138 + QEN71_RS35030 0.65 +1.5 1,196,138 + QEN71_RS35030 0.65 -1.6 1,196,138 + QEN71_RS35030 0.65 -2.3 1,196,138 + QEN71_RS35030 0.65 -1.3 1,196,139 - QEN71_RS35030 0.65 -4.1 1,196,496 - QEN71_RS35030 0.87 -2.2 1,196,601 - -1.2 1,196,728 - -0.7 1,196,794 - -0.5 1,196,957 - -1.0 1,197,085 + -1.1 1,197,085 + -0.6 1,197,086 - +0.4 1,197,165 - -0.1 1,197,342 - +1.1 1,197,425 + +0.7 1,197,425 + +0.8 1,197,425 + +0.2 1,197,425 + -1.9 1,197,425 + -0.2 1,197,426 - +0.3 1,197,426 - +1.6 1,197,426 - -0.7 1,197,501 + +0.1 1,197,502 - +0.1 1,197,524 - +0.3 1,197,524 - +0.1 1,197,580 - +0.1 1,197,602 + -1.4 1,197,646 - +1.1
Or see this region's nucleotide sequence