Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33145 and QEN71_RS33150 are separated by 180 nucleotides QEN71_RS33150 and QEN71_RS33155 are separated by 10 nucleotides QEN71_RS33155 and QEN71_RS33160 overlap by 4 nucleotides QEN71_RS33160 and QEN71_RS33165 overlap by 8 nucleotides
QEN71_RS33145: QEN71_RS33145 - alcohol dehydrogenase, at 763,112 to 764,125
_RS33145
QEN71_RS33150: QEN71_RS33150 - DUF3348 domain-containing protein, at 764,306 to 765,055
_RS33150
QEN71_RS33155: QEN71_RS33155 - DUF802 domain-containing protein, at 765,066 to 767,501
_RS33155
QEN71_RS33160: QEN71_RS33160 - OmpA family protein, at 767,498 to 768,145
_RS33160
QEN71_RS33165: QEN71_RS33165 - DUF2894 domain-containing protein, at 768,138 to 768,764
_RS33165
Position (kb) 765
766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 764.072 kb on + strand at 764.073 kb on - strand at 764.073 kb on - strand at 764.123 kb on + strand at 764.123 kb on + strand at 764.123 kb on + strand at 764.124 kb on - strand at 764.124 kb on - strand at 764.124 kb on - strand at 764.124 kb on - strand at 764.124 kb on - strand at 764.124 kb on - strand at 764.124 kb on - strand at 764.124 kb on - strand at 764.274 kb on - strand at 764.305 kb on + strand at 764.305 kb on + strand at 764.305 kb on + strand at 764.305 kb on + strand at 764.306 kb on - strand at 764.306 kb on - strand at 764.306 kb on - strand at 764.306 kb on - strand at 764.654 kb on + strand, within QEN71_RS33150 at 764.654 kb on + strand, within QEN71_RS33150 at 764.654 kb on + strand, within QEN71_RS33150 at 764.654 kb on + strand, within QEN71_RS33150 at 764.654 kb on + strand, within QEN71_RS33150 at 764.655 kb on - strand, within QEN71_RS33150 at 764.675 kb on + strand, within QEN71_RS33150 at 764.676 kb on - strand, within QEN71_RS33150 at 764.676 kb on - strand, within QEN71_RS33150 at 764.676 kb on - strand, within QEN71_RS33150 at 764.676 kb on - strand, within QEN71_RS33150 at 765.075 kb on + strand at 765.075 kb on + strand at 765.076 kb on - strand at 765.106 kb on + strand at 765.141 kb on + strand at 765.195 kb on + strand at 765.195 kb on + strand at 765.195 kb on + strand at 765.195 kb on + strand at 765.196 kb on - strand at 765.196 kb on - strand at 765.196 kb on - strand at 765.196 kb on - strand at 765.225 kb on + strand at 765.226 kb on - strand at 765.269 kb on + strand at 765.390 kb on + strand, within QEN71_RS33155 at 765.391 kb on - strand, within QEN71_RS33155 at 765.391 kb on - strand, within QEN71_RS33155 at 765.852 kb on + strand, within QEN71_RS33155 at 765.853 kb on - strand, within QEN71_RS33155 at 765.853 kb on - strand, within QEN71_RS33155 at 765.853 kb on - strand, within QEN71_RS33155 at 765.853 kb on - strand, within QEN71_RS33155 at 766.152 kb on - strand, within QEN71_RS33155 at 766.228 kb on + strand, within QEN71_RS33155 at 766.228 kb on + strand, within QEN71_RS33155 at 766.884 kb on - strand, within QEN71_RS33155 at 767.367 kb on - strand at 767.386 kb on - strand at 767.388 kb on + strand at 767.388 kb on + strand at 767.388 kb on + strand at 767.389 kb on - strand at 767.389 kb on - strand at 767.389 kb on - strand at 767.389 kb on - strand at 767.389 kb on - strand at 767.389 kb on - strand at 767.849 kb on + strand, within QEN71_RS33160 at 767.849 kb on + strand, within QEN71_RS33160 at 767.850 kb on - strand, within QEN71_RS33160 at 767.984 kb on - strand, within QEN71_RS33160 at 768.144 kb on - strand at 768.315 kb on + strand, within QEN71_RS33165 at 768.315 kb on + strand, within QEN71_RS33165 at 768.316 kb on - strand, within QEN71_RS33165 at 768.316 kb on - strand, within QEN71_RS33165 at 768.403 kb on - strand, within QEN71_RS33165 at 768.403 kb on - strand, within QEN71_RS33165 at 768.484 kb on - strand, within QEN71_RS33165
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 764,072 + -0.6 764,073 - +0.3 764,073 - -1.6 764,123 + -1.2 764,123 + -0.1 764,123 + +1.1 764,124 - -0.5 764,124 - -1.1 764,124 - +0.8 764,124 - -0.5 764,124 - -0.5 764,124 - -1.0 764,124 - -0.6 764,124 - -0.3 764,274 - -0.4 764,305 + -1.6 764,305 + -0.5 764,305 + -1.6 764,305 + -2.4 764,306 - -1.5 764,306 - -0.6 764,306 - -0.8 764,306 - -1.4 764,654 + QEN71_RS33150 0.46 -0.6 764,654 + QEN71_RS33150 0.46 -1.3 764,654 + QEN71_RS33150 0.46 -1.6 764,654 + QEN71_RS33150 0.46 -1.5 764,654 + QEN71_RS33150 0.46 -2.2 764,655 - QEN71_RS33150 0.47 -1.3 764,675 + QEN71_RS33150 0.49 -3.2 764,676 - QEN71_RS33150 0.49 -1.4 764,676 - QEN71_RS33150 0.49 -1.1 764,676 - QEN71_RS33150 0.49 +0.1 764,676 - QEN71_RS33150 0.49 +0.3 765,075 + -0.3 765,075 + -1.9 765,076 - -1.5 765,106 + -2.4 765,141 + -3.4 765,195 + -2.3 765,195 + +0.1 765,195 + -1.1 765,195 + -0.5 765,196 - -1.4 765,196 - -1.1 765,196 - -2.9 765,196 - -2.5 765,225 + -2.5 765,226 - -1.8 765,269 + -2.8 765,390 + QEN71_RS33155 0.13 -1.8 765,391 - QEN71_RS33155 0.13 -1.4 765,391 - QEN71_RS33155 0.13 -1.5 765,852 + QEN71_RS33155 0.32 -3.6 765,853 - QEN71_RS33155 0.32 -1.8 765,853 - QEN71_RS33155 0.32 -3.7 765,853 - QEN71_RS33155 0.32 -1.8 765,853 - QEN71_RS33155 0.32 -3.1 766,152 - QEN71_RS33155 0.45 -1.4 766,228 + QEN71_RS33155 0.48 -1.3 766,228 + QEN71_RS33155 0.48 -2.3 766,884 - QEN71_RS33155 0.75 -1.4 767,367 - -0.5 767,386 - -1.2 767,388 + -2.0 767,388 + -2.6 767,388 + -0.3 767,389 - -3.5 767,389 - -1.5 767,389 - -0.5 767,389 - -2.8 767,389 - -2.6 767,389 - -1.5 767,849 + QEN71_RS33160 0.54 -1.6 767,849 + QEN71_RS33160 0.54 -0.3 767,850 - QEN71_RS33160 0.54 -1.7 767,984 - QEN71_RS33160 0.75 -2.5 768,144 - -1.1 768,315 + QEN71_RS33165 0.28 -0.7 768,315 + QEN71_RS33165 0.28 -1.6 768,316 - QEN71_RS33165 0.28 -3.2 768,316 - QEN71_RS33165 0.28 -2.6 768,403 - QEN71_RS33165 0.42 -2.2 768,403 - QEN71_RS33165 0.42 -1.3 768,484 - QEN71_RS33165 0.55 +0.1
Or see this region's nucleotide sequence