Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32725 and QEN71_RS32730 overlap by 4 nucleotides QEN71_RS32730 and QEN71_RS32735 are separated by 97 nucleotides QEN71_RS32735 and QEN71_RS32740 are separated by 39 nucleotides
QEN71_RS32725: QEN71_RS32725 - ATP-grasp domain-containing protein, at 676,571 to 677,596
_RS32725
QEN71_RS32730: QEN71_RS32730 - hydantoinase/oxoprolinase family protein, at 677,593 to 678,672
_RS32730
QEN71_RS32735: QEN71_RS32735 - aspartate kinase, at 678,770 to 679,360
_RS32735
QEN71_RS32740: QEN71_RS32740 - (5-formylfuran-3-yl)methyl phosphate synthase, at 679,400 to 680,098
_RS32740
Position (kb) 677
678
679 Strain fitness (log2 ratio) -2
-1
0
1
2 at 676.593 kb on - strand at 676.841 kb on + strand, within QEN71_RS32725 at 676.842 kb on - strand, within QEN71_RS32725 at 676.842 kb on - strand, within QEN71_RS32725 at 677.094 kb on + strand, within QEN71_RS32725 at 677.094 kb on + strand, within QEN71_RS32725 at 677.094 kb on + strand, within QEN71_RS32725 at 677.094 kb on + strand, within QEN71_RS32725 at 677.095 kb on - strand, within QEN71_RS32725 at 677.483 kb on + strand, within QEN71_RS32725 at 677.484 kb on - strand, within QEN71_RS32725 at 678.003 kb on - strand, within QEN71_RS32730 at 678.003 kb on - strand, within QEN71_RS32730 at 678.003 kb on - strand, within QEN71_RS32730 at 678.229 kb on - strand, within QEN71_RS32730 at 678.229 kb on - strand, within QEN71_RS32730 at 678.229 kb on - strand, within QEN71_RS32730 at 678.535 kb on + strand, within QEN71_RS32730 at 678.535 kb on + strand, within QEN71_RS32730 at 678.536 kb on - strand, within QEN71_RS32730 at 678.769 kb on + strand at 678.770 kb on - strand at 678.770 kb on - strand at 678.770 kb on - strand at 678.909 kb on - strand, within QEN71_RS32735 at 678.909 kb on - strand, within QEN71_RS32735 at 679.269 kb on - strand, within QEN71_RS32735 at 679.269 kb on - strand, within QEN71_RS32735 at 679.286 kb on + strand, within QEN71_RS32735 at 679.286 kb on + strand, within QEN71_RS32735 at 679.573 kb on + strand, within QEN71_RS32740 at 679.611 kb on + strand, within QEN71_RS32740 at 679.611 kb on + strand, within QEN71_RS32740 at 679.612 kb on - strand, within QEN71_RS32740
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 676,593 - -1.0 676,841 + QEN71_RS32725 0.26 +0.3 676,842 - QEN71_RS32725 0.26 -0.2 676,842 - QEN71_RS32725 0.26 -0.2 677,094 + QEN71_RS32725 0.51 +0.5 677,094 + QEN71_RS32725 0.51 -0.8 677,094 + QEN71_RS32725 0.51 +0.2 677,094 + QEN71_RS32725 0.51 +1.1 677,095 - QEN71_RS32725 0.51 +1.8 677,483 + QEN71_RS32725 0.89 +2.6 677,484 - QEN71_RS32725 0.89 -0.2 678,003 - QEN71_RS32730 0.38 +0.2 678,003 - QEN71_RS32730 0.38 +1.1 678,003 - QEN71_RS32730 0.38 +0.4 678,229 - QEN71_RS32730 0.59 +0.5 678,229 - QEN71_RS32730 0.59 -0.2 678,229 - QEN71_RS32730 0.59 -0.7 678,535 + QEN71_RS32730 0.87 +0.2 678,535 + QEN71_RS32730 0.87 +0.1 678,536 - QEN71_RS32730 0.87 -1.9 678,769 + -1.8 678,770 - +0.9 678,770 - -0.2 678,770 - +1.5 678,909 - QEN71_RS32735 0.24 -0.2 678,909 - QEN71_RS32735 0.24 -0.6 679,269 - QEN71_RS32735 0.84 -0.6 679,269 - QEN71_RS32735 0.84 +0.6 679,286 + QEN71_RS32735 0.87 -0.5 679,286 + QEN71_RS32735 0.87 -2.1 679,573 + QEN71_RS32740 0.25 +0.1 679,611 + QEN71_RS32740 0.30 +0.3 679,611 + QEN71_RS32740 0.30 -0.6 679,612 - QEN71_RS32740 0.30 +1.5
Or see this region's nucleotide sequence