Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31985 and QEN71_RS31990 are separated by 262 nucleotides QEN71_RS31990 and QEN71_RS31995 are separated by 37 nucleotides QEN71_RS31995 and QEN71_RS32000 overlap by 4 nucleotides
QEN71_RS31985: QEN71_RS31985 - ABC transporter substrate-binding protein, at 527,518 to 528,528
_RS31985
QEN71_RS31990: QEN71_RS31990 - cupin domain-containing protein, at 528,791 to 529,135
_RS31990
QEN71_RS31995: QEN71_RS31995 - M14 family metallopeptidase, at 529,173 to 530,150
_RS31995
QEN71_RS32000: QEN71_RS32000 - NAD-dependent succinate-semialdehyde dehydrogenase, at 530,147 to 531,619
_RS32000
Position (kb) 529
530
531 Strain fitness (log2 ratio) -1
0
1
2 at 528.173 kb on + strand, within QEN71_RS31985 at 528.173 kb on + strand, within QEN71_RS31985 at 528.174 kb on - strand, within QEN71_RS31985 at 528.174 kb on - strand, within QEN71_RS31985 at 528.183 kb on - strand, within QEN71_RS31985 at 528.447 kb on - strand at 528.677 kb on + strand at 528.732 kb on + strand at 528.732 kb on + strand at 528.732 kb on + strand at 528.732 kb on + strand at 528.733 kb on - strand at 528.733 kb on - strand at 528.738 kb on + strand at 528.739 kb on - strand at 528.804 kb on + strand at 528.869 kb on - strand, within QEN71_RS31990 at 528.969 kb on + strand, within QEN71_RS31990 at 529.022 kb on + strand, within QEN71_RS31990 at 529.156 kb on - strand at 529.156 kb on - strand at 529.156 kb on - strand at 529.174 kb on + strand at 529.175 kb on - strand at 529.351 kb on + strand, within QEN71_RS31995 at 529.351 kb on + strand, within QEN71_RS31995 at 529.352 kb on - strand, within QEN71_RS31995 at 529.352 kb on - strand, within QEN71_RS31995 at 529.352 kb on - strand, within QEN71_RS31995 at 529.597 kb on + strand, within QEN71_RS31995 at 529.761 kb on - strand, within QEN71_RS31995 at 530.063 kb on + strand at 530.063 kb on + strand at 530.063 kb on + strand at 530.064 kb on - strand at 530.064 kb on - strand at 530.071 kb on + strand at 530.071 kb on + strand at 530.072 kb on - strand at 530.072 kb on - strand at 530.072 kb on - strand at 530.072 kb on - strand at 530.104 kb on + strand at 530.104 kb on + strand at 530.104 kb on + strand at 530.105 kb on - strand at 530.105 kb on - strand at 530.173 kb on - strand at 530.202 kb on + strand at 530.346 kb on + strand, within QEN71_RS32000 at 530.347 kb on - strand, within QEN71_RS32000 at 530.353 kb on - strand, within QEN71_RS32000 at 530.499 kb on + strand, within QEN71_RS32000 at 530.503 kb on - strand, within QEN71_RS32000 at 530.718 kb on + strand, within QEN71_RS32000 at 530.719 kb on - strand, within QEN71_RS32000 at 530.719 kb on - strand, within QEN71_RS32000 at 530.719 kb on - strand, within QEN71_RS32000 at 530.886 kb on + strand, within QEN71_RS32000 at 530.887 kb on - strand, within QEN71_RS32000
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 528,173 + QEN71_RS31985 0.65 +0.5 528,173 + QEN71_RS31985 0.65 -1.2 528,174 - QEN71_RS31985 0.65 -0.3 528,174 - QEN71_RS31985 0.65 +1.1 528,183 - QEN71_RS31985 0.66 -0.0 528,447 - +0.4 528,677 + +0.3 528,732 + -1.6 528,732 + -0.6 528,732 + -0.5 528,732 + -0.1 528,733 - -0.9 528,733 - -0.3 528,738 + -0.2 528,739 - -1.1 528,804 + -0.1 528,869 - QEN71_RS31990 0.23 -0.6 528,969 + QEN71_RS31990 0.52 -0.2 529,022 + QEN71_RS31990 0.67 -0.2 529,156 - +0.2 529,156 - -0.7 529,156 - +0.2 529,174 + -0.8 529,175 - +0.6 529,351 + QEN71_RS31995 0.18 +0.8 529,351 + QEN71_RS31995 0.18 -0.2 529,352 - QEN71_RS31995 0.18 -0.1 529,352 - QEN71_RS31995 0.18 +1.5 529,352 - QEN71_RS31995 0.18 +0.2 529,597 + QEN71_RS31995 0.43 +0.3 529,761 - QEN71_RS31995 0.60 +0.6 530,063 + +0.3 530,063 + +2.1 530,063 + +1.1 530,064 - +0.2 530,064 - -0.4 530,071 + +0.3 530,071 + -0.1 530,072 - -1.6 530,072 - -0.2 530,072 - +0.6 530,072 - -0.5 530,104 + +0.6 530,104 + -0.6 530,104 + -0.0 530,105 - -0.8 530,105 - -0.1 530,173 - +0.0 530,202 + -0.6 530,346 + QEN71_RS32000 0.14 +0.2 530,347 - QEN71_RS32000 0.14 -0.7 530,353 - QEN71_RS32000 0.14 -0.2 530,499 + QEN71_RS32000 0.24 +0.1 530,503 - QEN71_RS32000 0.24 -0.4 530,718 + QEN71_RS32000 0.39 -1.5 530,719 - QEN71_RS32000 0.39 -0.1 530,719 - QEN71_RS32000 0.39 +0.4 530,719 - QEN71_RS32000 0.39 -0.6 530,886 + QEN71_RS32000 0.50 -0.6 530,887 - QEN71_RS32000 0.50 +0.3
Or see this region's nucleotide sequence