Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31490

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31485 and QEN71_RS31490 are separated by 5 nucleotidesQEN71_RS31490 and QEN71_RS31495 overlap by 1 nucleotidesQEN71_RS31495 and QEN71_RS31500 are separated by 51 nucleotides QEN71_RS31485: QEN71_RS31485 - ABC transporter substrate-binding protein, at 413,968 to 415,467 _RS31485 QEN71_RS31490: QEN71_RS31490 - ABC transporter permease, at 415,473 to 416,417 _RS31490 QEN71_RS31495: QEN71_RS31495 - ABC transporter permease, at 416,417 to 417,301 _RS31495 QEN71_RS31500: QEN71_RS31500 - gamma-glutamyltransferase family protein, at 417,353 to 418,990 _RS31500 Position (kb) 415 416 417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 414.503 kb on - strand, within QEN71_RS31485at 414.503 kb on - strand, within QEN71_RS31485at 414.577 kb on + strand, within QEN71_RS31485at 414.577 kb on + strand, within QEN71_RS31485at 414.578 kb on - strand, within QEN71_RS31485at 414.745 kb on + strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.748 kb on + strand, within QEN71_RS31485at 414.748 kb on + strand, within QEN71_RS31485at 414.748 kb on + strand, within QEN71_RS31485at 414.749 kb on - strand, within QEN71_RS31485at 414.749 kb on - strand, within QEN71_RS31485at 414.749 kb on - strand, within QEN71_RS31485at 414.877 kb on + strand, within QEN71_RS31485at 414.877 kb on + strand, within QEN71_RS31485at 414.877 kb on + strand, within QEN71_RS31485at 414.916 kb on + strand, within QEN71_RS31485at 414.919 kb on + strand, within QEN71_RS31485at 414.919 kb on + strand, within QEN71_RS31485at 414.919 kb on + strand, within QEN71_RS31485at 414.920 kb on - strand, within QEN71_RS31485at 414.920 kb on - strand, within QEN71_RS31485at 415.015 kb on + strand, within QEN71_RS31485at 415.156 kb on + strand, within QEN71_RS31485at 415.156 kb on + strand, within QEN71_RS31485at 415.157 kb on - strand, within QEN71_RS31485at 415.157 kb on - strand, within QEN71_RS31485at 415.157 kb on - strand, within QEN71_RS31485at 415.157 kb on - strand, within QEN71_RS31485at 415.207 kb on + strand, within QEN71_RS31485at 415.207 kb on + strand, within QEN71_RS31485at 415.208 kb on - strand, within QEN71_RS31485at 415.240 kb on + strand, within QEN71_RS31485at 415.315 kb on + strand, within QEN71_RS31485at 415.315 kb on + strand, within QEN71_RS31485at 415.361 kb on - strandat 415.367 kb on - strandat 415.636 kb on - strand, within QEN71_RS31490at 415.666 kb on - strand, within QEN71_RS31490at 415.972 kb on - strand, within QEN71_RS31490at 415.972 kb on - strand, within QEN71_RS31490at 416.106 kb on + strand, within QEN71_RS31490at 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.384 kb on + strandat 416.385 kb on - strandat 416.423 kb on - strandat 416.423 kb on - strandat 416.429 kb on - strandat 416.429 kb on - strandat 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.976 kb on - strand, within QEN71_RS31495at 416.976 kb on - strand, within QEN71_RS31495at 417.029 kb on + strand, within QEN71_RS31495

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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414,503 - QEN71_RS31485 0.36 +1.1
414,503 - QEN71_RS31485 0.36 +1.9
414,577 + QEN71_RS31485 0.41 -0.5
414,577 + QEN71_RS31485 0.41 -0.1
414,578 - QEN71_RS31485 0.41 -0.3
414,745 + QEN71_RS31485 0.52 -1.7
414,746 - QEN71_RS31485 0.52 -0.8
414,746 - QEN71_RS31485 0.52 +0.4
414,746 - QEN71_RS31485 0.52 +0.0
414,746 - QEN71_RS31485 0.52 -0.0
414,746 - QEN71_RS31485 0.52 +0.9
414,746 - QEN71_RS31485 0.52 +0.9
414,746 - QEN71_RS31485 0.52 -0.6
414,746 - QEN71_RS31485 0.52 +2.4
414,746 - QEN71_RS31485 0.52 -0.8
414,748 + QEN71_RS31485 0.52 +0.2
414,748 + QEN71_RS31485 0.52 +0.7
414,748 + QEN71_RS31485 0.52 -0.6
414,749 - QEN71_RS31485 0.52 +0.4
414,749 - QEN71_RS31485 0.52 +0.3
414,749 - QEN71_RS31485 0.52 -0.7
414,877 + QEN71_RS31485 0.61 +0.3
414,877 + QEN71_RS31485 0.61 -0.7
414,877 + QEN71_RS31485 0.61 +0.4
414,916 + QEN71_RS31485 0.63 -0.5
414,919 + QEN71_RS31485 0.63 +1.4
414,919 + QEN71_RS31485 0.63 +0.0
414,919 + QEN71_RS31485 0.63 -0.8
414,920 - QEN71_RS31485 0.63 +1.0
414,920 - QEN71_RS31485 0.63 -0.9
415,015 + QEN71_RS31485 0.70 -0.0
415,156 + QEN71_RS31485 0.79 -0.4
415,156 + QEN71_RS31485 0.79 -0.5
415,157 - QEN71_RS31485 0.79 +0.2
415,157 - QEN71_RS31485 0.79 +0.8
415,157 - QEN71_RS31485 0.79 -0.4
415,157 - QEN71_RS31485 0.79 +0.8
415,207 + QEN71_RS31485 0.83 -3.5
415,207 + QEN71_RS31485 0.83 +0.4
415,208 - QEN71_RS31485 0.83 +1.7
415,240 + QEN71_RS31485 0.85 +2.0
415,315 + QEN71_RS31485 0.90 -1.0
415,315 + QEN71_RS31485 0.90 +1.3
415,361 - -0.1
415,367 - -1.0
415,636 - QEN71_RS31490 0.17 +0.2
415,666 - QEN71_RS31490 0.20 +2.0
415,972 - QEN71_RS31490 0.53 +0.6
415,972 - QEN71_RS31490 0.53 -1.5
416,106 + QEN71_RS31490 0.67 -1.7
416,382 + -1.0
416,382 + +0.7
416,382 + +0.6
416,382 + -0.7
416,382 + +0.2
416,382 + +0.7
416,382 + -0.4
416,383 - -2.0
416,383 - -0.2
416,383 - +0.3
416,383 - -0.6
416,383 - +0.1
416,383 - +0.4
416,383 - +0.2
416,383 - -0.4
416,383 - +0.0
416,384 + -0.9
416,385 - -0.5
416,423 - -0.6
416,423 - -0.1
416,429 - -1.5
416,429 - -1.3
416,975 + QEN71_RS31495 0.63 +0.0
416,975 + QEN71_RS31495 0.63 -0.6
416,975 + QEN71_RS31495 0.63 -0.2
416,975 + QEN71_RS31495 0.63 -2.2
416,976 - QEN71_RS31495 0.63 +1.6
416,976 - QEN71_RS31495 0.63 -0.6
417,029 + QEN71_RS31495 0.69 -1.3

Or see this region's nucleotide sequence