Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30580

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS30575 and QEN71_RS30580 are separated by 54 nucleotidesQEN71_RS30580 and QEN71_RS30585 are separated by 12 nucleotides QEN71_RS30575: QEN71_RS30575 - esterase, at 197,112 to 197,789 _RS30575 QEN71_RS30580: QEN71_RS30580 - ATP-binding protein, at 197,844 to 199,466 _RS30580 QEN71_RS30585: QEN71_RS30585 - class I poly(R)-hydroxyalkanoic acid synthase, at 199,479 to 201,185 _RS30585 Position (kb) 197 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 197.198 kb on - strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.230 kb on - strand, within QEN71_RS30575at 197.230 kb on - strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.396 kb on - strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.450 kb on - strand, within QEN71_RS30575at 197.514 kb on + strand, within QEN71_RS30575at 197.514 kb on + strand, within QEN71_RS30575at 197.514 kb on + strand, within QEN71_RS30575at 197.515 kb on - strand, within QEN71_RS30575at 197.703 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.831 kb on + strandat 197.831 kb on + strandat 197.831 kb on + strandat 197.832 kb on - strandat 197.832 kb on - strandat 197.858 kb on - strandat 198.000 kb on + strandat 198.001 kb on - strandat 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.129 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.357 kb on - strand, within QEN71_RS30580at 198.402 kb on + strand, within QEN71_RS30580at 198.432 kb on + strand, within QEN71_RS30580at 198.681 kb on + strand, within QEN71_RS30580at 198.681 kb on + strand, within QEN71_RS30580at 198.681 kb on + strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.716 kb on + strand, within QEN71_RS30580at 198.716 kb on + strand, within QEN71_RS30580at 198.717 kb on - strand, within QEN71_RS30580at 198.717 kb on - strand, within QEN71_RS30580at 198.747 kb on + strand, within QEN71_RS30580at 199.078 kb on - strand, within QEN71_RS30580at 199.078 kb on - strand, within QEN71_RS30580at 199.079 kb on + strand, within QEN71_RS30580at 199.233 kb on + strand, within QEN71_RS30580at 199.464 kb on + strandat 199.531 kb on + strandat 199.531 kb on + strandat 199.532 kb on - strandat 199.918 kb on + strand, within QEN71_RS30585at 199.918 kb on + strand, within QEN71_RS30585at 199.918 kb on + strand, within QEN71_RS30585at 199.918 kb on + strand, within QEN71_RS30585at 199.918 kb on + strand, within QEN71_RS30585at 199.919 kb on - strand, within QEN71_RS30585at 199.919 kb on - strand, within QEN71_RS30585at 199.933 kb on + strand, within QEN71_RS30585at 199.942 kb on + strand, within QEN71_RS30585at 199.942 kb on + strand, within QEN71_RS30585at 199.942 kb on + strand, within QEN71_RS30585at 199.943 kb on - strand, within QEN71_RS30585at 199.943 kb on - strand, within QEN71_RS30585at 200.020 kb on + strand, within QEN71_RS30585at 200.021 kb on - strand, within QEN71_RS30585at 200.035 kb on + strand, within QEN71_RS30585at 200.036 kb on - strand, within QEN71_RS30585at 200.362 kb on + strand, within QEN71_RS30585at 200.363 kb on - strand, within QEN71_RS30585at 200.379 kb on - strand, within QEN71_RS30585

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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197,198 - QEN71_RS30575 0.13 +0.8
197,229 + QEN71_RS30575 0.17 -0.3
197,229 + QEN71_RS30575 0.17 -0.6
197,229 + QEN71_RS30575 0.17 -0.2
197,229 + QEN71_RS30575 0.17 +0.5
197,229 + QEN71_RS30575 0.17 -0.9
197,230 - QEN71_RS30575 0.17 +0.1
197,230 - QEN71_RS30575 0.17 -0.4
197,319 + QEN71_RS30575 0.31 -0.6
197,319 + QEN71_RS30575 0.31 +0.1
197,319 + QEN71_RS30575 0.31 -0.3
197,319 + QEN71_RS30575 0.31 -0.0
197,396 - QEN71_RS30575 0.42 -0.6
197,449 + QEN71_RS30575 0.50 -0.2
197,449 + QEN71_RS30575 0.50 +0.3
197,449 + QEN71_RS30575 0.50 -0.1
197,449 + QEN71_RS30575 0.50 -0.8
197,449 + QEN71_RS30575 0.50 -0.0
197,450 - QEN71_RS30575 0.50 +0.1
197,514 + QEN71_RS30575 0.59 -1.5
197,514 + QEN71_RS30575 0.59 +1.2
197,514 + QEN71_RS30575 0.59 -0.3
197,515 - QEN71_RS30575 0.59 -0.5
197,703 + QEN71_RS30575 0.87 -0.0
197,715 + QEN71_RS30575 0.89 +0.3
197,715 + QEN71_RS30575 0.89 +1.4
197,715 + QEN71_RS30575 0.89 -0.9
197,715 + QEN71_RS30575 0.89 +0.8
197,716 - QEN71_RS30575 0.89 -0.7
197,716 - QEN71_RS30575 0.89 +1.1
197,716 - QEN71_RS30575 0.89 -1.3
197,716 - QEN71_RS30575 0.89 -0.4
197,716 - QEN71_RS30575 0.89 -2.0
197,831 + -0.1
197,831 + +1.2
197,831 + +1.0
197,832 - -0.1
197,832 - -0.6
197,858 - -1.2
198,000 + -1.1
198,001 - -2.0
198,067 - QEN71_RS30580 0.14 -1.0
198,067 - QEN71_RS30580 0.14 -0.4
198,067 - QEN71_RS30580 0.14 -0.1
198,067 - QEN71_RS30580 0.14 +0.4
198,067 - QEN71_RS30580 0.14 -3.0
198,129 + QEN71_RS30580 0.18 -0.0
198,243 + QEN71_RS30580 0.25 -0.5
198,243 + QEN71_RS30580 0.25 +1.0
198,243 + QEN71_RS30580 0.25 +0.7
198,243 + QEN71_RS30580 0.25 +0.6
198,243 + QEN71_RS30580 0.25 +0.8
198,243 + QEN71_RS30580 0.25 +0.1
198,243 + QEN71_RS30580 0.25 -0.5
198,243 + QEN71_RS30580 0.25 -1.2
198,243 + QEN71_RS30580 0.25 -0.6
198,244 - QEN71_RS30580 0.25 -0.7
198,244 - QEN71_RS30580 0.25 -0.9
198,244 - QEN71_RS30580 0.25 +0.5
198,244 - QEN71_RS30580 0.25 +0.4
198,357 - QEN71_RS30580 0.32 -0.9
198,402 + QEN71_RS30580 0.34 -0.2
198,432 + QEN71_RS30580 0.36 +1.0
198,681 + QEN71_RS30580 0.52 +0.2
198,681 + QEN71_RS30580 0.52 +0.1
198,681 + QEN71_RS30580 0.52 -0.7
198,682 - QEN71_RS30580 0.52 +0.5
198,682 - QEN71_RS30580 0.52 -0.3
198,682 - QEN71_RS30580 0.52 -1.2
198,682 - QEN71_RS30580 0.52 +1.0
198,716 + QEN71_RS30580 0.54 +1.8
198,716 + QEN71_RS30580 0.54 -0.0
198,717 - QEN71_RS30580 0.54 +0.2
198,717 - QEN71_RS30580 0.54 -0.3
198,747 + QEN71_RS30580 0.56 +0.4
199,078 - QEN71_RS30580 0.76 -0.5
199,078 - QEN71_RS30580 0.76 +0.1
199,079 + QEN71_RS30580 0.76 -0.2
199,233 + QEN71_RS30580 0.86 -1.0
199,464 + -0.5
199,531 + +0.5
199,531 + +0.1
199,532 - -0.3
199,918 + QEN71_RS30585 0.26 -0.5
199,918 + QEN71_RS30585 0.26 +2.2
199,918 + QEN71_RS30585 0.26 +1.0
199,918 + QEN71_RS30585 0.26 +0.0
199,918 + QEN71_RS30585 0.26 +0.4
199,919 - QEN71_RS30585 0.26 +0.1
199,919 - QEN71_RS30585 0.26 -1.8
199,933 + QEN71_RS30585 0.27 -0.9
199,942 + QEN71_RS30585 0.27 +0.2
199,942 + QEN71_RS30585 0.27 -0.7
199,942 + QEN71_RS30585 0.27 -0.6
199,943 - QEN71_RS30585 0.27 -0.1
199,943 - QEN71_RS30585 0.27 +0.7
200,020 + QEN71_RS30585 0.32 -0.5
200,021 - QEN71_RS30585 0.32 -0.0
200,035 + QEN71_RS30585 0.33 +0.8
200,036 - QEN71_RS30585 0.33 +0.0
200,362 + QEN71_RS30585 0.52 +1.4
200,363 - QEN71_RS30585 0.52 -0.4
200,379 - QEN71_RS30585 0.53 -0.8

Or see this region's nucleotide sequence