Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29675

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29665 and QEN71_RS29670 are separated by 30 nucleotidesQEN71_RS29670 and QEN71_RS29675 are separated by 73 nucleotidesQEN71_RS29675 and QEN71_RS29680 are separated by 25 nucleotides QEN71_RS29665: QEN71_RS29665 - membrane protein insertase YidC, at 6,580,966 to 6,582,618 _RS29665 QEN71_RS29670: QEN71_RS29670 - membrane protein insertion efficiency factor YidD, at 6,582,649 to 6,582,879 _RS29670 QEN71_RS29675: QEN71_RS29675 - ribonuclease P protein component, at 6,582,953 to 6,583,462 _RS29675 QEN71_RS29680: QEN71_RS29680 - 50S ribosomal protein L34, at 6,583,488 to 6,583,622 _RS29680 Position (kb) 6582 6583 6584Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 6582.661 kb on - strandat 6582.661 kb on - strandat 6582.661 kb on - strandat 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.738 kb on - strand, within QEN71_RS29670at 6582.742 kb on - strand, within QEN71_RS29670at 6582.742 kb on - strand, within QEN71_RS29670at 6582.742 kb on - strand, within QEN71_RS29670at 6582.742 kb on - strand, within QEN71_RS29670at 6582.742 kb on - strand, within QEN71_RS29670at 6582.742 kb on - strand, within QEN71_RS29670at 6582.742 kb on - strand, within QEN71_RS29670at 6582.761 kb on + strand, within QEN71_RS29670at 6582.761 kb on + strand, within QEN71_RS29670at 6582.762 kb on - strand, within QEN71_RS29670at 6582.762 kb on - strand, within QEN71_RS29670at 6582.762 kb on - strand, within QEN71_RS29670at 6582.783 kb on - strand, within QEN71_RS29670at 6582.801 kb on - strand, within QEN71_RS29670at 6582.846 kb on - strand, within QEN71_RS29670at 6582.846 kb on - strand, within QEN71_RS29670at 6582.846 kb on - strand, within QEN71_RS29670at 6582.846 kb on - strand, within QEN71_RS29670at 6582.869 kb on - strandat 6582.869 kb on - strandat 6582.869 kb on - strandat 6582.869 kb on - strandat 6582.869 kb on - strandat 6582.883 kb on + strandat 6582.884 kb on - strandat 6582.884 kb on - strandat 6582.884 kb on - strandat 6582.884 kb on - strandat 6582.884 kb on - strandat 6582.922 kb on - strandat 6582.922 kb on - strandat 6582.922 kb on - strandat 6582.922 kb on - strandat 6582.922 kb on - strandat 6582.922 kb on - strandat 6583.032 kb on - strand, within QEN71_RS29675at 6583.032 kb on - strand, within QEN71_RS29675at 6583.032 kb on - strand, within QEN71_RS29675at 6583.032 kb on - strand, within QEN71_RS29675at 6583.032 kb on - strand, within QEN71_RS29675at 6583.032 kb on - strand, within QEN71_RS29675at 6583.032 kb on - strand, within QEN71_RS29675at 6583.744 kb on - strandat 6583.744 kb on - strandat 6583.805 kb on - strandat 6583.805 kb on - strandat 6583.833 kb on - strandat 6583.845 kb on + strandat 6583.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,582,661 - -2.3
6,582,661 - -0.2
6,582,661 - -0.4
6,582,738 - QEN71_RS29670 0.39 -0.5
6,582,738 - QEN71_RS29670 0.39 -0.4
6,582,738 - QEN71_RS29670 0.39 -0.2
6,582,738 - QEN71_RS29670 0.39 +1.3
6,582,738 - QEN71_RS29670 0.39 -0.8
6,582,738 - QEN71_RS29670 0.39 -0.2
6,582,738 - QEN71_RS29670 0.39 -1.6
6,582,738 - QEN71_RS29670 0.39 -0.6
6,582,738 - QEN71_RS29670 0.39 -0.1
6,582,738 - QEN71_RS29670 0.39 +0.4
6,582,738 - QEN71_RS29670 0.39 +0.0
6,582,738 - QEN71_RS29670 0.39 -0.6
6,582,738 - QEN71_RS29670 0.39 -0.1
6,582,738 - QEN71_RS29670 0.39 -0.2
6,582,738 - QEN71_RS29670 0.39 +1.1
6,582,738 - QEN71_RS29670 0.39 -0.3
6,582,738 - QEN71_RS29670 0.39 -0.5
6,582,738 - QEN71_RS29670 0.39 -0.7
6,582,738 - QEN71_RS29670 0.39 +0.1
6,582,742 - QEN71_RS29670 0.40 +0.7
6,582,742 - QEN71_RS29670 0.40 -0.9
6,582,742 - QEN71_RS29670 0.40 +0.1
6,582,742 - QEN71_RS29670 0.40 -1.1
6,582,742 - QEN71_RS29670 0.40 +0.1
6,582,742 - QEN71_RS29670 0.40 -0.6
6,582,742 - QEN71_RS29670 0.40 +0.6
6,582,761 + QEN71_RS29670 0.48 +1.6
6,582,761 + QEN71_RS29670 0.48 +0.1
6,582,762 - QEN71_RS29670 0.49 +0.5
6,582,762 - QEN71_RS29670 0.49 -0.1
6,582,762 - QEN71_RS29670 0.49 -1.5
6,582,783 - QEN71_RS29670 0.58 -0.9
6,582,801 - QEN71_RS29670 0.66 -0.2
6,582,846 - QEN71_RS29670 0.85 -0.4
6,582,846 - QEN71_RS29670 0.85 -0.7
6,582,846 - QEN71_RS29670 0.85 -1.4
6,582,846 - QEN71_RS29670 0.85 -0.2
6,582,869 - +0.4
6,582,869 - +0.2
6,582,869 - +1.0
6,582,869 - +0.5
6,582,869 - -1.4
6,582,883 + -0.7
6,582,884 - -0.9
6,582,884 - -0.1
6,582,884 - +0.4
6,582,884 - -0.2
6,582,884 - -0.4
6,582,922 - +0.1
6,582,922 - +0.3
6,582,922 - +0.8
6,582,922 - -0.2
6,582,922 - +1.1
6,582,922 - +0.8
6,583,032 - QEN71_RS29675 0.15 -2.4
6,583,032 - QEN71_RS29675 0.15 -3.7
6,583,032 - QEN71_RS29675 0.15 -4.9
6,583,032 - QEN71_RS29675 0.15 -2.5
6,583,032 - QEN71_RS29675 0.15 -3.1
6,583,032 - QEN71_RS29675 0.15 -3.1
6,583,032 - QEN71_RS29675 0.15 +0.1
6,583,744 - -0.2
6,583,744 - +0.6
6,583,805 - +0.3
6,583,805 - -1.0
6,583,833 - -1.1
6,583,845 + -0.9
6,583,845 + -1.1

Or see this region's nucleotide sequence