Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29665 and QEN71_RS29670 are separated by 30 nucleotides QEN71_RS29670 and QEN71_RS29675 are separated by 73 nucleotides QEN71_RS29675 and QEN71_RS29680 are separated by 25 nucleotides
QEN71_RS29665: QEN71_RS29665 - membrane protein insertase YidC, at 6,580,966 to 6,582,618
_RS29665
QEN71_RS29670: QEN71_RS29670 - membrane protein insertion efficiency factor YidD, at 6,582,649 to 6,582,879
_RS29670
QEN71_RS29675: QEN71_RS29675 - ribonuclease P protein component, at 6,582,953 to 6,583,462
_RS29675
QEN71_RS29680: QEN71_RS29680 - 50S ribosomal protein L34, at 6,583,488 to 6,583,622
_RS29680
Position (kb)
6582
6583
6584 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 6582.661 kb on - strand at 6582.661 kb on - strand at 6582.661 kb on - strand at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.738 kb on - strand, within QEN71_RS29670 at 6582.742 kb on - strand, within QEN71_RS29670 at 6582.742 kb on - strand, within QEN71_RS29670 at 6582.742 kb on - strand, within QEN71_RS29670 at 6582.742 kb on - strand, within QEN71_RS29670 at 6582.742 kb on - strand, within QEN71_RS29670 at 6582.742 kb on - strand, within QEN71_RS29670 at 6582.742 kb on - strand, within QEN71_RS29670 at 6582.761 kb on + strand, within QEN71_RS29670 at 6582.761 kb on + strand, within QEN71_RS29670 at 6582.762 kb on - strand, within QEN71_RS29670 at 6582.762 kb on - strand, within QEN71_RS29670 at 6582.762 kb on - strand, within QEN71_RS29670 at 6582.783 kb on - strand, within QEN71_RS29670 at 6582.801 kb on - strand, within QEN71_RS29670 at 6582.846 kb on - strand, within QEN71_RS29670 at 6582.846 kb on - strand, within QEN71_RS29670 at 6582.846 kb on - strand, within QEN71_RS29670 at 6582.846 kb on - strand, within QEN71_RS29670 at 6582.869 kb on - strand at 6582.869 kb on - strand at 6582.869 kb on - strand at 6582.869 kb on - strand at 6582.869 kb on - strand at 6582.883 kb on + strand at 6582.884 kb on - strand at 6582.884 kb on - strand at 6582.884 kb on - strand at 6582.884 kb on - strand at 6582.884 kb on - strand at 6582.922 kb on - strand at 6582.922 kb on - strand at 6582.922 kb on - strand at 6582.922 kb on - strand at 6582.922 kb on - strand at 6582.922 kb on - strand at 6583.032 kb on - strand, within QEN71_RS29675 at 6583.032 kb on - strand, within QEN71_RS29675 at 6583.032 kb on - strand, within QEN71_RS29675 at 6583.032 kb on - strand, within QEN71_RS29675 at 6583.032 kb on - strand, within QEN71_RS29675 at 6583.032 kb on - strand, within QEN71_RS29675 at 6583.032 kb on - strand, within QEN71_RS29675 at 6583.744 kb on - strand at 6583.744 kb on - strand at 6583.805 kb on - strand at 6583.805 kb on - strand at 6583.833 kb on - strand at 6583.845 kb on + strand at 6583.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 6,582,661 - -2.3 6,582,661 - -0.2 6,582,661 - -0.4 6,582,738 - QEN71_RS29670 0.39 -0.5 6,582,738 - QEN71_RS29670 0.39 -0.4 6,582,738 - QEN71_RS29670 0.39 -0.2 6,582,738 - QEN71_RS29670 0.39 +1.3 6,582,738 - QEN71_RS29670 0.39 -0.8 6,582,738 - QEN71_RS29670 0.39 -0.2 6,582,738 - QEN71_RS29670 0.39 -1.6 6,582,738 - QEN71_RS29670 0.39 -0.6 6,582,738 - QEN71_RS29670 0.39 -0.1 6,582,738 - QEN71_RS29670 0.39 +0.4 6,582,738 - QEN71_RS29670 0.39 +0.0 6,582,738 - QEN71_RS29670 0.39 -0.6 6,582,738 - QEN71_RS29670 0.39 -0.1 6,582,738 - QEN71_RS29670 0.39 -0.2 6,582,738 - QEN71_RS29670 0.39 +1.1 6,582,738 - QEN71_RS29670 0.39 -0.3 6,582,738 - QEN71_RS29670 0.39 -0.5 6,582,738 - QEN71_RS29670 0.39 -0.7 6,582,738 - QEN71_RS29670 0.39 +0.1 6,582,742 - QEN71_RS29670 0.40 +0.7 6,582,742 - QEN71_RS29670 0.40 -0.9 6,582,742 - QEN71_RS29670 0.40 +0.1 6,582,742 - QEN71_RS29670 0.40 -1.1 6,582,742 - QEN71_RS29670 0.40 +0.1 6,582,742 - QEN71_RS29670 0.40 -0.6 6,582,742 - QEN71_RS29670 0.40 +0.6 6,582,761 + QEN71_RS29670 0.48 +1.6 6,582,761 + QEN71_RS29670 0.48 +0.1 6,582,762 - QEN71_RS29670 0.49 +0.5 6,582,762 - QEN71_RS29670 0.49 -0.1 6,582,762 - QEN71_RS29670 0.49 -1.5 6,582,783 - QEN71_RS29670 0.58 -0.9 6,582,801 - QEN71_RS29670 0.66 -0.2 6,582,846 - QEN71_RS29670 0.85 -0.4 6,582,846 - QEN71_RS29670 0.85 -0.7 6,582,846 - QEN71_RS29670 0.85 -1.4 6,582,846 - QEN71_RS29670 0.85 -0.2 6,582,869 - +0.4 6,582,869 - +0.2 6,582,869 - +1.0 6,582,869 - +0.5 6,582,869 - -1.4 6,582,883 + -0.7 6,582,884 - -0.9 6,582,884 - -0.1 6,582,884 - +0.4 6,582,884 - -0.2 6,582,884 - -0.4 6,582,922 - +0.1 6,582,922 - +0.3 6,582,922 - +0.8 6,582,922 - -0.2 6,582,922 - +1.1 6,582,922 - +0.8 6,583,032 - QEN71_RS29675 0.15 -2.4 6,583,032 - QEN71_RS29675 0.15 -3.7 6,583,032 - QEN71_RS29675 0.15 -4.9 6,583,032 - QEN71_RS29675 0.15 -2.5 6,583,032 - QEN71_RS29675 0.15 -3.1 6,583,032 - QEN71_RS29675 0.15 -3.1 6,583,032 - QEN71_RS29675 0.15 +0.1 6,583,744 - -0.2 6,583,744 - +0.6 6,583,805 - +0.3 6,583,805 - -1.0 6,583,833 - -1.1 6,583,845 + -0.9 6,583,845 + -1.1
Or see this region's nucleotide sequence