Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29165

Experiment: Motility_outer_sample_with_outgrowth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS29160 and QEN71_RS29165 overlap by 4 nucleotidesQEN71_RS29165 and QEN71_RS29170 are separated by 22 nucleotides QEN71_RS29160: QEN71_RS29160 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 6,466,133 to 6,467,314 _RS29160 QEN71_RS29165: QEN71_RS29165 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 6,467,311 to 6,468,507 _RS29165 QEN71_RS29170: QEN71_RS29170 - class I SAM-dependent methyltransferase, at 6,468,530 to 6,469,222 _RS29170 Position (kb) 6467 6468 6469Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 6466.404 kb on + strand, within QEN71_RS29160at 6466.405 kb on - strand, within QEN71_RS29160at 6466.405 kb on - strand, within QEN71_RS29160at 6466.488 kb on + strand, within QEN71_RS29160at 6466.488 kb on + strand, within QEN71_RS29160at 6466.489 kb on - strand, within QEN71_RS29160at 6466.623 kb on + strand, within QEN71_RS29160at 6466.623 kb on + strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.800 kb on + strand, within QEN71_RS29160at 6466.801 kb on - strand, within QEN71_RS29160at 6466.801 kb on - strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6467.135 kb on + strand, within QEN71_RS29160at 6467.136 kb on - strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.169 kb on + strand, within QEN71_RS29160at 6467.169 kb on + strand, within QEN71_RS29160at 6467.169 kb on + strand, within QEN71_RS29160at 6467.170 kb on - strand, within QEN71_RS29160at 6467.170 kb on - strand, within QEN71_RS29160at 6467.205 kb on + strandat 6467.206 kb on - strandat 6467.206 kb on - strandat 6467.321 kb on + strandat 6467.349 kb on + strandat 6467.349 kb on + strandat 6467.349 kb on + strandat 6467.349 kb on + strandat 6467.350 kb on - strandat 6467.350 kb on - strandat 6467.350 kb on - strandat 6467.477 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.513 kb on + strand, within QEN71_RS29165at 6467.513 kb on + strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.610 kb on - strand, within QEN71_RS29165at 6467.678 kb on + strand, within QEN71_RS29165at 6467.679 kb on - strand, within QEN71_RS29165at 6467.708 kb on - strand, within QEN71_RS29165at 6467.779 kb on - strand, within QEN71_RS29165at 6467.870 kb on + strand, within QEN71_RS29165at 6467.871 kb on - strand, within QEN71_RS29165at 6467.871 kb on - strand, within QEN71_RS29165at 6467.891 kb on - strand, within QEN71_RS29165at 6467.958 kb on - strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.198 kb on - strand, within QEN71_RS29165at 6468.198 kb on - strand, within QEN71_RS29165at 6468.362 kb on + strand, within QEN71_RS29165at 6468.392 kb on + strandat 6468.516 kb on + strandat 6468.558 kb on + strandat 6468.558 kb on + strandat 6468.559 kb on - strandat 6468.559 kb on - strandat 6468.565 kb on - strandat 6468.576 kb on + strandat 6468.576 kb on + strandat 6468.577 kb on - strandat 6468.577 kb on - strandat 6468.831 kb on + strand, within QEN71_RS29170at 6468.831 kb on + strand, within QEN71_RS29170at 6468.831 kb on + strand, within QEN71_RS29170at 6468.832 kb on - strand, within QEN71_RS29170at 6468.832 kb on - strand, within QEN71_RS29170at 6468.846 kb on + strand, within QEN71_RS29170at 6468.846 kb on + strand, within QEN71_RS29170at 6468.847 kb on - strand, within QEN71_RS29170at 6468.847 kb on - strand, within QEN71_RS29170at 6468.894 kb on + strand, within QEN71_RS29170at 6468.894 kb on + strand, within QEN71_RS29170at 6468.894 kb on + strand, within QEN71_RS29170at 6468.894 kb on + strand, within QEN71_RS29170at 6468.894 kb on + strand, within QEN71_RS29170at 6468.895 kb on - strand, within QEN71_RS29170at 6468.895 kb on - strand, within QEN71_RS29170at 6468.895 kb on - strand, within QEN71_RS29170at 6468.895 kb on - strand, within QEN71_RS29170at 6468.895 kb on - strand, within QEN71_RS29170at 6468.966 kb on + strand, within QEN71_RS29170at 6468.967 kb on - strand, within QEN71_RS29170at 6468.967 kb on - strand, within QEN71_RS29170at 6469.137 kb on + strand, within QEN71_RS29170at 6469.137 kb on + strand, within QEN71_RS29170at 6469.137 kb on + strand, within QEN71_RS29170at 6469.137 kb on + strand, within QEN71_RS29170at 6469.138 kb on - strand, within QEN71_RS29170at 6469.138 kb on - strand, within QEN71_RS29170at 6469.192 kb on - strandat 6469.200 kb on + strandat 6469.201 kb on - strandat 6469.216 kb on - strandat 6469.222 kb on + strandat 6469.222 kb on + strandat 6469.223 kb on - strandat 6469.223 kb on - strandat 6469.234 kb on + strandat 6469.234 kb on + strandat 6469.234 kb on + strandat 6469.235 kb on - strandat 6469.285 kb on + strandat 6469.285 kb on + strandat 6469.285 kb on + strandat 6469.285 kb on + strandat 6469.285 kb on + strandat 6469.285 kb on + strandat 6469.285 kb on + strandat 6469.286 kb on - strandat 6469.286 kb on - strandat 6469.366 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
remove
6,466,404 + QEN71_RS29160 0.23 -5.2
6,466,405 - QEN71_RS29160 0.23 -1.2
6,466,405 - QEN71_RS29160 0.23 -1.6
6,466,488 + QEN71_RS29160 0.30 -0.2
6,466,488 + QEN71_RS29160 0.30 -4.1
6,466,489 - QEN71_RS29160 0.30 -1.9
6,466,623 + QEN71_RS29160 0.41 -1.2
6,466,623 + QEN71_RS29160 0.41 -0.2
6,466,624 - QEN71_RS29160 0.42 -3.2
6,466,624 - QEN71_RS29160 0.42 -3.0
6,466,624 - QEN71_RS29160 0.42 -1.2
6,466,624 - QEN71_RS29160 0.42 -3.0
6,466,800 + QEN71_RS29160 0.56 -1.2
6,466,801 - QEN71_RS29160 0.57 +0.5
6,466,801 - QEN71_RS29160 0.57 -4.2
6,466,949 + QEN71_RS29160 0.69 -2.1
6,466,949 + QEN71_RS29160 0.69 -3.8
6,466,949 + QEN71_RS29160 0.69 -1.7
6,466,949 + QEN71_RS29160 0.69 -3.1
6,466,949 + QEN71_RS29160 0.69 -0.9
6,466,949 + QEN71_RS29160 0.69 -4.8
6,466,949 + QEN71_RS29160 0.69 -3.4
6,466,949 + QEN71_RS29160 0.69 -3.2
6,466,949 + QEN71_RS29160 0.69 -3.1
6,466,949 + QEN71_RS29160 0.69 -3.5
6,466,949 + QEN71_RS29160 0.69 -1.9
6,466,949 + QEN71_RS29160 0.69 -0.8
6,466,949 + QEN71_RS29160 0.69 -3.1
6,466,950 - QEN71_RS29160 0.69 -3.8
6,466,950 - QEN71_RS29160 0.69 -0.5
6,466,950 - QEN71_RS29160 0.69 -0.5
6,466,950 - QEN71_RS29160 0.69 -0.2
6,466,950 - QEN71_RS29160 0.69 -4.7
6,467,135 + QEN71_RS29160 0.85 -4.0
6,467,136 - QEN71_RS29160 0.85 -2.5
6,467,166 + QEN71_RS29160 0.87 -3.0
6,467,166 + QEN71_RS29160 0.87 -4.7
6,467,166 + QEN71_RS29160 0.87 -3.9
6,467,166 + QEN71_RS29160 0.87 -2.7
6,467,166 + QEN71_RS29160 0.87 -1.4
6,467,166 + QEN71_RS29160 0.87 -1.1
6,467,166 + QEN71_RS29160 0.87 -1.1
6,467,167 - QEN71_RS29160 0.87 -3.5
6,467,167 - QEN71_RS29160 0.87 -0.2
6,467,167 - QEN71_RS29160 0.87 -3.1
6,467,167 - QEN71_RS29160 0.87 -2.7
6,467,167 - QEN71_RS29160 0.87 -0.4
6,467,169 + QEN71_RS29160 0.88 -3.8
6,467,169 + QEN71_RS29160 0.88 -3.3
6,467,169 + QEN71_RS29160 0.88 -2.9
6,467,170 - QEN71_RS29160 0.88 -3.1
6,467,170 - QEN71_RS29160 0.88 -4.3
6,467,205 + -2.8
6,467,206 - -3.4
6,467,206 - -1.1
6,467,321 + -0.9
6,467,349 + +0.1
6,467,349 + -2.8
6,467,349 + -3.2
6,467,349 + -1.6
6,467,350 - +0.8
6,467,350 - -0.5
6,467,350 - -1.9
6,467,477 + QEN71_RS29165 0.14 -0.2
6,467,510 + QEN71_RS29165 0.17 -1.5
6,467,510 + QEN71_RS29165 0.17 -3.5
6,467,510 + QEN71_RS29165 0.17 -3.6
6,467,510 + QEN71_RS29165 0.17 -0.2
6,467,510 + QEN71_RS29165 0.17 -3.0
6,467,510 + QEN71_RS29165 0.17 -3.8
6,467,510 + QEN71_RS29165 0.17 -1.1
6,467,510 - QEN71_RS29165 0.17 -4.2
6,467,511 - QEN71_RS29165 0.17 -1.6
6,467,511 - QEN71_RS29165 0.17 -0.5
6,467,511 - QEN71_RS29165 0.17 -4.3
6,467,511 - QEN71_RS29165 0.17 -3.7
6,467,511 - QEN71_RS29165 0.17 -3.6
6,467,513 + QEN71_RS29165 0.17 -1.4
6,467,513 + QEN71_RS29165 0.17 -3.7
6,467,514 - QEN71_RS29165 0.17 -1.7
6,467,514 - QEN71_RS29165 0.17 -2.8
6,467,514 - QEN71_RS29165 0.17 -3.1
6,467,514 - QEN71_RS29165 0.17 -4.3
6,467,610 - QEN71_RS29165 0.25 -2.2
6,467,678 + QEN71_RS29165 0.31 -2.4
6,467,679 - QEN71_RS29165 0.31 -2.3
6,467,708 - QEN71_RS29165 0.33 -4.9
6,467,779 - QEN71_RS29165 0.39 -3.6
6,467,870 + QEN71_RS29165 0.47 -0.5
6,467,871 - QEN71_RS29165 0.47 -1.6
6,467,871 - QEN71_RS29165 0.47 -4.5
6,467,891 - QEN71_RS29165 0.48 -3.7
6,467,958 - QEN71_RS29165 0.54 -0.5
6,468,061 + QEN71_RS29165 0.63 -4.8
6,468,061 + QEN71_RS29165 0.63 -1.1
6,468,061 + QEN71_RS29165 0.63 -4.6
6,468,061 + QEN71_RS29165 0.63 -2.9
6,468,061 + QEN71_RS29165 0.63 -3.1
6,468,061 + QEN71_RS29165 0.63 -2.1
6,468,062 - QEN71_RS29165 0.63 -3.5
6,468,062 - QEN71_RS29165 0.63 -2.9
6,468,062 - QEN71_RS29165 0.63 -5.2
6,468,062 - QEN71_RS29165 0.63 -0.7
6,468,062 - QEN71_RS29165 0.63 -3.6
6,468,062 - QEN71_RS29165 0.63 -1.6
6,468,062 - QEN71_RS29165 0.63 -4.1
6,468,198 - QEN71_RS29165 0.74 -3.3
6,468,198 - QEN71_RS29165 0.74 -3.6
6,468,362 + QEN71_RS29165 0.88 -4.2
6,468,392 + -2.6
6,468,516 + -1.3
6,468,558 + -0.1
6,468,558 + +0.2
6,468,559 - -0.5
6,468,559 - +0.1
6,468,565 - -0.6
6,468,576 + -1.1
6,468,576 + +0.3
6,468,577 - -0.1
6,468,577 - +0.6
6,468,831 + QEN71_RS29170 0.43 -1.0
6,468,831 + QEN71_RS29170 0.43 -1.6
6,468,831 + QEN71_RS29170 0.43 -1.1
6,468,832 - QEN71_RS29170 0.44 +0.2
6,468,832 - QEN71_RS29170 0.44 -0.2
6,468,846 + QEN71_RS29170 0.46 -0.5
6,468,846 + QEN71_RS29170 0.46 -0.2
6,468,847 - QEN71_RS29170 0.46 +1.7
6,468,847 - QEN71_RS29170 0.46 +0.6
6,468,894 + QEN71_RS29170 0.53 +0.8
6,468,894 + QEN71_RS29170 0.53 -1.7
6,468,894 + QEN71_RS29170 0.53 -0.2
6,468,894 + QEN71_RS29170 0.53 -1.9
6,468,894 + QEN71_RS29170 0.53 -0.5
6,468,895 - QEN71_RS29170 0.53 +0.8
6,468,895 - QEN71_RS29170 0.53 -1.4
6,468,895 - QEN71_RS29170 0.53 +0.7
6,468,895 - QEN71_RS29170 0.53 -1.1
6,468,895 - QEN71_RS29170 0.53 +0.7
6,468,966 + QEN71_RS29170 0.63 +0.6
6,468,967 - QEN71_RS29170 0.63 +0.7
6,468,967 - QEN71_RS29170 0.63 +1.9
6,469,137 + QEN71_RS29170 0.88 -2.7
6,469,137 + QEN71_RS29170 0.88 +0.9
6,469,137 + QEN71_RS29170 0.88 -0.1
6,469,137 + QEN71_RS29170 0.88 -0.1
6,469,138 - QEN71_RS29170 0.88 +0.1
6,469,138 - QEN71_RS29170 0.88 -0.1
6,469,192 - +0.7
6,469,200 + -0.9
6,469,201 - +0.3
6,469,216 - +1.4
6,469,222 + -0.8
6,469,222 + -0.0
6,469,223 - -0.3
6,469,223 - +1.2
6,469,234 + -0.3
6,469,234 + -0.0
6,469,234 + -0.0
6,469,235 - +0.6
6,469,285 + +0.9
6,469,285 + -0.0
6,469,285 + -0.6
6,469,285 + -1.8
6,469,285 + -0.5
6,469,285 + -1.1
6,469,285 + -0.0
6,469,286 - -1.2
6,469,286 - +0.2
6,469,366 + +0.3

Or see this region's nucleotide sequence