Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29160 and QEN71_RS29165 overlap by 4 nucleotides QEN71_RS29165 and QEN71_RS29170 are separated by 22 nucleotides
QEN71_RS29160: QEN71_RS29160 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 6,466,133 to 6,467,314
_RS29160
QEN71_RS29165: QEN71_RS29165 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 6,467,311 to 6,468,507
_RS29165
QEN71_RS29170: QEN71_RS29170 - class I SAM-dependent methyltransferase, at 6,468,530 to 6,469,222
_RS29170
Position (kb)
6467
6468
6469 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 6466.404 kb on + strand, within QEN71_RS29160 at 6466.405 kb on - strand, within QEN71_RS29160 at 6466.405 kb on - strand, within QEN71_RS29160 at 6466.488 kb on + strand, within QEN71_RS29160 at 6466.488 kb on + strand, within QEN71_RS29160 at 6466.489 kb on - strand, within QEN71_RS29160 at 6466.623 kb on + strand, within QEN71_RS29160 at 6466.623 kb on + strand, within QEN71_RS29160 at 6466.624 kb on - strand, within QEN71_RS29160 at 6466.624 kb on - strand, within QEN71_RS29160 at 6466.624 kb on - strand, within QEN71_RS29160 at 6466.624 kb on - strand, within QEN71_RS29160 at 6466.800 kb on + strand, within QEN71_RS29160 at 6466.801 kb on - strand, within QEN71_RS29160 at 6466.801 kb on - strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.949 kb on + strand, within QEN71_RS29160 at 6466.950 kb on - strand, within QEN71_RS29160 at 6466.950 kb on - strand, within QEN71_RS29160 at 6466.950 kb on - strand, within QEN71_RS29160 at 6466.950 kb on - strand, within QEN71_RS29160 at 6466.950 kb on - strand, within QEN71_RS29160 at 6467.135 kb on + strand, within QEN71_RS29160 at 6467.136 kb on - strand, within QEN71_RS29160 at 6467.166 kb on + strand, within QEN71_RS29160 at 6467.166 kb on + strand, within QEN71_RS29160 at 6467.166 kb on + strand, within QEN71_RS29160 at 6467.166 kb on + strand, within QEN71_RS29160 at 6467.166 kb on + strand, within QEN71_RS29160 at 6467.166 kb on + strand, within QEN71_RS29160 at 6467.166 kb on + strand, within QEN71_RS29160 at 6467.167 kb on - strand, within QEN71_RS29160 at 6467.167 kb on - strand, within QEN71_RS29160 at 6467.167 kb on - strand, within QEN71_RS29160 at 6467.167 kb on - strand, within QEN71_RS29160 at 6467.167 kb on - strand, within QEN71_RS29160 at 6467.169 kb on + strand, within QEN71_RS29160 at 6467.169 kb on + strand, within QEN71_RS29160 at 6467.169 kb on + strand, within QEN71_RS29160 at 6467.170 kb on - strand, within QEN71_RS29160 at 6467.170 kb on - strand, within QEN71_RS29160 at 6467.205 kb on + strand at 6467.206 kb on - strand at 6467.206 kb on - strand at 6467.321 kb on + strand at 6467.349 kb on + strand at 6467.349 kb on + strand at 6467.349 kb on + strand at 6467.349 kb on + strand at 6467.350 kb on - strand at 6467.350 kb on - strand at 6467.350 kb on - strand at 6467.477 kb on + strand, within QEN71_RS29165 at 6467.510 kb on + strand, within QEN71_RS29165 at 6467.510 kb on + strand, within QEN71_RS29165 at 6467.510 kb on + strand, within QEN71_RS29165 at 6467.510 kb on + strand, within QEN71_RS29165 at 6467.510 kb on + strand, within QEN71_RS29165 at 6467.510 kb on + strand, within QEN71_RS29165 at 6467.510 kb on + strand, within QEN71_RS29165 at 6467.510 kb on - strand, within QEN71_RS29165 at 6467.511 kb on - strand, within QEN71_RS29165 at 6467.511 kb on - strand, within QEN71_RS29165 at 6467.511 kb on - strand, within QEN71_RS29165 at 6467.511 kb on - strand, within QEN71_RS29165 at 6467.511 kb on - strand, within QEN71_RS29165 at 6467.513 kb on + strand, within QEN71_RS29165 at 6467.513 kb on + strand, within QEN71_RS29165 at 6467.514 kb on - strand, within QEN71_RS29165 at 6467.514 kb on - strand, within QEN71_RS29165 at 6467.514 kb on - strand, within QEN71_RS29165 at 6467.514 kb on - strand, within QEN71_RS29165 at 6467.610 kb on - strand, within QEN71_RS29165 at 6467.678 kb on + strand, within QEN71_RS29165 at 6467.679 kb on - strand, within QEN71_RS29165 at 6467.708 kb on - strand, within QEN71_RS29165 at 6467.779 kb on - strand, within QEN71_RS29165 at 6467.870 kb on + strand, within QEN71_RS29165 at 6467.871 kb on - strand, within QEN71_RS29165 at 6467.871 kb on - strand, within QEN71_RS29165 at 6467.891 kb on - strand, within QEN71_RS29165 at 6467.958 kb on - strand, within QEN71_RS29165 at 6468.061 kb on + strand, within QEN71_RS29165 at 6468.061 kb on + strand, within QEN71_RS29165 at 6468.061 kb on + strand, within QEN71_RS29165 at 6468.061 kb on + strand, within QEN71_RS29165 at 6468.061 kb on + strand, within QEN71_RS29165 at 6468.061 kb on + strand, within QEN71_RS29165 at 6468.062 kb on - strand, within QEN71_RS29165 at 6468.062 kb on - strand, within QEN71_RS29165 at 6468.062 kb on - strand, within QEN71_RS29165 at 6468.062 kb on - strand, within QEN71_RS29165 at 6468.062 kb on - strand, within QEN71_RS29165 at 6468.062 kb on - strand, within QEN71_RS29165 at 6468.062 kb on - strand, within QEN71_RS29165 at 6468.198 kb on - strand, within QEN71_RS29165 at 6468.198 kb on - strand, within QEN71_RS29165 at 6468.362 kb on + strand, within QEN71_RS29165 at 6468.392 kb on + strand at 6468.516 kb on + strand at 6468.558 kb on + strand at 6468.558 kb on + strand at 6468.559 kb on - strand at 6468.559 kb on - strand at 6468.565 kb on - strand at 6468.576 kb on + strand at 6468.576 kb on + strand at 6468.577 kb on - strand at 6468.577 kb on - strand at 6468.831 kb on + strand, within QEN71_RS29170 at 6468.831 kb on + strand, within QEN71_RS29170 at 6468.831 kb on + strand, within QEN71_RS29170 at 6468.832 kb on - strand, within QEN71_RS29170 at 6468.832 kb on - strand, within QEN71_RS29170 at 6468.846 kb on + strand, within QEN71_RS29170 at 6468.846 kb on + strand, within QEN71_RS29170 at 6468.847 kb on - strand, within QEN71_RS29170 at 6468.847 kb on - strand, within QEN71_RS29170 at 6468.894 kb on + strand, within QEN71_RS29170 at 6468.894 kb on + strand, within QEN71_RS29170 at 6468.894 kb on + strand, within QEN71_RS29170 at 6468.894 kb on + strand, within QEN71_RS29170 at 6468.894 kb on + strand, within QEN71_RS29170 at 6468.895 kb on - strand, within QEN71_RS29170 at 6468.895 kb on - strand, within QEN71_RS29170 at 6468.895 kb on - strand, within QEN71_RS29170 at 6468.895 kb on - strand, within QEN71_RS29170 at 6468.895 kb on - strand, within QEN71_RS29170 at 6468.966 kb on + strand, within QEN71_RS29170 at 6468.967 kb on - strand, within QEN71_RS29170 at 6468.967 kb on - strand, within QEN71_RS29170 at 6469.137 kb on + strand, within QEN71_RS29170 at 6469.137 kb on + strand, within QEN71_RS29170 at 6469.137 kb on + strand, within QEN71_RS29170 at 6469.137 kb on + strand, within QEN71_RS29170 at 6469.138 kb on - strand, within QEN71_RS29170 at 6469.138 kb on - strand, within QEN71_RS29170 at 6469.192 kb on - strand at 6469.200 kb on + strand at 6469.201 kb on - strand at 6469.216 kb on - strand at 6469.222 kb on + strand at 6469.222 kb on + strand at 6469.223 kb on - strand at 6469.223 kb on - strand at 6469.234 kb on + strand at 6469.234 kb on + strand at 6469.234 kb on + strand at 6469.235 kb on - strand at 6469.285 kb on + strand at 6469.285 kb on + strand at 6469.285 kb on + strand at 6469.285 kb on + strand at 6469.285 kb on + strand at 6469.285 kb on + strand at 6469.285 kb on + strand at 6469.286 kb on - strand at 6469.286 kb on - strand at 6469.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 6,466,404 + QEN71_RS29160 0.23 -5.2 6,466,405 - QEN71_RS29160 0.23 -1.2 6,466,405 - QEN71_RS29160 0.23 -1.6 6,466,488 + QEN71_RS29160 0.30 -0.2 6,466,488 + QEN71_RS29160 0.30 -4.1 6,466,489 - QEN71_RS29160 0.30 -1.9 6,466,623 + QEN71_RS29160 0.41 -1.2 6,466,623 + QEN71_RS29160 0.41 -0.2 6,466,624 - QEN71_RS29160 0.42 -3.2 6,466,624 - QEN71_RS29160 0.42 -3.0 6,466,624 - QEN71_RS29160 0.42 -1.2 6,466,624 - QEN71_RS29160 0.42 -3.0 6,466,800 + QEN71_RS29160 0.56 -1.2 6,466,801 - QEN71_RS29160 0.57 +0.5 6,466,801 - QEN71_RS29160 0.57 -4.2 6,466,949 + QEN71_RS29160 0.69 -2.1 6,466,949 + QEN71_RS29160 0.69 -3.8 6,466,949 + QEN71_RS29160 0.69 -1.7 6,466,949 + QEN71_RS29160 0.69 -3.1 6,466,949 + QEN71_RS29160 0.69 -0.9 6,466,949 + QEN71_RS29160 0.69 -4.8 6,466,949 + QEN71_RS29160 0.69 -3.4 6,466,949 + QEN71_RS29160 0.69 -3.2 6,466,949 + QEN71_RS29160 0.69 -3.1 6,466,949 + QEN71_RS29160 0.69 -3.5 6,466,949 + QEN71_RS29160 0.69 -1.9 6,466,949 + QEN71_RS29160 0.69 -0.8 6,466,949 + QEN71_RS29160 0.69 -3.1 6,466,950 - QEN71_RS29160 0.69 -3.8 6,466,950 - QEN71_RS29160 0.69 -0.5 6,466,950 - QEN71_RS29160 0.69 -0.5 6,466,950 - QEN71_RS29160 0.69 -0.2 6,466,950 - QEN71_RS29160 0.69 -4.7 6,467,135 + QEN71_RS29160 0.85 -4.0 6,467,136 - QEN71_RS29160 0.85 -2.5 6,467,166 + QEN71_RS29160 0.87 -3.0 6,467,166 + QEN71_RS29160 0.87 -4.7 6,467,166 + QEN71_RS29160 0.87 -3.9 6,467,166 + QEN71_RS29160 0.87 -2.7 6,467,166 + QEN71_RS29160 0.87 -1.4 6,467,166 + QEN71_RS29160 0.87 -1.1 6,467,166 + QEN71_RS29160 0.87 -1.1 6,467,167 - QEN71_RS29160 0.87 -3.5 6,467,167 - QEN71_RS29160 0.87 -0.2 6,467,167 - QEN71_RS29160 0.87 -3.1 6,467,167 - QEN71_RS29160 0.87 -2.7 6,467,167 - QEN71_RS29160 0.87 -0.4 6,467,169 + QEN71_RS29160 0.88 -3.8 6,467,169 + QEN71_RS29160 0.88 -3.3 6,467,169 + QEN71_RS29160 0.88 -2.9 6,467,170 - QEN71_RS29160 0.88 -3.1 6,467,170 - QEN71_RS29160 0.88 -4.3 6,467,205 + -2.8 6,467,206 - -3.4 6,467,206 - -1.1 6,467,321 + -0.9 6,467,349 + +0.1 6,467,349 + -2.8 6,467,349 + -3.2 6,467,349 + -1.6 6,467,350 - +0.8 6,467,350 - -0.5 6,467,350 - -1.9 6,467,477 + QEN71_RS29165 0.14 -0.2 6,467,510 + QEN71_RS29165 0.17 -1.5 6,467,510 + QEN71_RS29165 0.17 -3.5 6,467,510 + QEN71_RS29165 0.17 -3.6 6,467,510 + QEN71_RS29165 0.17 -0.2 6,467,510 + QEN71_RS29165 0.17 -3.0 6,467,510 + QEN71_RS29165 0.17 -3.8 6,467,510 + QEN71_RS29165 0.17 -1.1 6,467,510 - QEN71_RS29165 0.17 -4.2 6,467,511 - QEN71_RS29165 0.17 -1.6 6,467,511 - QEN71_RS29165 0.17 -0.5 6,467,511 - QEN71_RS29165 0.17 -4.3 6,467,511 - QEN71_RS29165 0.17 -3.7 6,467,511 - QEN71_RS29165 0.17 -3.6 6,467,513 + QEN71_RS29165 0.17 -1.4 6,467,513 + QEN71_RS29165 0.17 -3.7 6,467,514 - QEN71_RS29165 0.17 -1.7 6,467,514 - QEN71_RS29165 0.17 -2.8 6,467,514 - QEN71_RS29165 0.17 -3.1 6,467,514 - QEN71_RS29165 0.17 -4.3 6,467,610 - QEN71_RS29165 0.25 -2.2 6,467,678 + QEN71_RS29165 0.31 -2.4 6,467,679 - QEN71_RS29165 0.31 -2.3 6,467,708 - QEN71_RS29165 0.33 -4.9 6,467,779 - QEN71_RS29165 0.39 -3.6 6,467,870 + QEN71_RS29165 0.47 -0.5 6,467,871 - QEN71_RS29165 0.47 -1.6 6,467,871 - QEN71_RS29165 0.47 -4.5 6,467,891 - QEN71_RS29165 0.48 -3.7 6,467,958 - QEN71_RS29165 0.54 -0.5 6,468,061 + QEN71_RS29165 0.63 -4.8 6,468,061 + QEN71_RS29165 0.63 -1.1 6,468,061 + QEN71_RS29165 0.63 -4.6 6,468,061 + QEN71_RS29165 0.63 -2.9 6,468,061 + QEN71_RS29165 0.63 -3.1 6,468,061 + QEN71_RS29165 0.63 -2.1 6,468,062 - QEN71_RS29165 0.63 -3.5 6,468,062 - QEN71_RS29165 0.63 -2.9 6,468,062 - QEN71_RS29165 0.63 -5.2 6,468,062 - QEN71_RS29165 0.63 -0.7 6,468,062 - QEN71_RS29165 0.63 -3.6 6,468,062 - QEN71_RS29165 0.63 -1.6 6,468,062 - QEN71_RS29165 0.63 -4.1 6,468,198 - QEN71_RS29165 0.74 -3.3 6,468,198 - QEN71_RS29165 0.74 -3.6 6,468,362 + QEN71_RS29165 0.88 -4.2 6,468,392 + -2.6 6,468,516 + -1.3 6,468,558 + -0.1 6,468,558 + +0.2 6,468,559 - -0.5 6,468,559 - +0.1 6,468,565 - -0.6 6,468,576 + -1.1 6,468,576 + +0.3 6,468,577 - -0.1 6,468,577 - +0.6 6,468,831 + QEN71_RS29170 0.43 -1.0 6,468,831 + QEN71_RS29170 0.43 -1.6 6,468,831 + QEN71_RS29170 0.43 -1.1 6,468,832 - QEN71_RS29170 0.44 +0.2 6,468,832 - QEN71_RS29170 0.44 -0.2 6,468,846 + QEN71_RS29170 0.46 -0.5 6,468,846 + QEN71_RS29170 0.46 -0.2 6,468,847 - QEN71_RS29170 0.46 +1.7 6,468,847 - QEN71_RS29170 0.46 +0.6 6,468,894 + QEN71_RS29170 0.53 +0.8 6,468,894 + QEN71_RS29170 0.53 -1.7 6,468,894 + QEN71_RS29170 0.53 -0.2 6,468,894 + QEN71_RS29170 0.53 -1.9 6,468,894 + QEN71_RS29170 0.53 -0.5 6,468,895 - QEN71_RS29170 0.53 +0.8 6,468,895 - QEN71_RS29170 0.53 -1.4 6,468,895 - QEN71_RS29170 0.53 +0.7 6,468,895 - QEN71_RS29170 0.53 -1.1 6,468,895 - QEN71_RS29170 0.53 +0.7 6,468,966 + QEN71_RS29170 0.63 +0.6 6,468,967 - QEN71_RS29170 0.63 +0.7 6,468,967 - QEN71_RS29170 0.63 +1.9 6,469,137 + QEN71_RS29170 0.88 -2.7 6,469,137 + QEN71_RS29170 0.88 +0.9 6,469,137 + QEN71_RS29170 0.88 -0.1 6,469,137 + QEN71_RS29170 0.88 -0.1 6,469,138 - QEN71_RS29170 0.88 +0.1 6,469,138 - QEN71_RS29170 0.88 -0.1 6,469,192 - +0.7 6,469,200 + -0.9 6,469,201 - +0.3 6,469,216 - +1.4 6,469,222 + -0.8 6,469,222 + -0.0 6,469,223 - -0.3 6,469,223 - +1.2 6,469,234 + -0.3 6,469,234 + -0.0 6,469,234 + -0.0 6,469,235 - +0.6 6,469,285 + +0.9 6,469,285 + -0.0 6,469,285 + -0.6 6,469,285 + -1.8 6,469,285 + -0.5 6,469,285 + -1.1 6,469,285 + -0.0 6,469,286 - -1.2 6,469,286 - +0.2 6,469,366 + +0.3
Or see this region's nucleotide sequence