Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29155

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29150 and QEN71_RS29155 are separated by 8 nucleotidesQEN71_RS29155 and QEN71_RS29160 are separated by 1 nucleotides QEN71_RS29150: QEN71_RS29150 - hypothetical protein, at 6,464,417 to 6,465,403 _RS29150 QEN71_RS29155: QEN71_RS29155 - WbqC family protein, at 6,465,412 to 6,466,131 _RS29155 QEN71_RS29160: QEN71_RS29160 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 6,466,133 to 6,467,314 _RS29160 Position (kb) 6465 6466 6467Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 6464.570 kb on + strand, within QEN71_RS29150at 6464.570 kb on + strand, within QEN71_RS29150at 6464.570 kb on + strand, within QEN71_RS29150at 6464.571 kb on - strand, within QEN71_RS29150at 6464.571 kb on - strand, within QEN71_RS29150at 6464.693 kb on + strand, within QEN71_RS29150at 6464.694 kb on - strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.703 kb on - strand, within QEN71_RS29150at 6464.703 kb on - strand, within QEN71_RS29150at 6464.755 kb on + strand, within QEN71_RS29150at 6464.756 kb on - strand, within QEN71_RS29150at 6464.756 kb on - strand, within QEN71_RS29150at 6464.861 kb on + strand, within QEN71_RS29150at 6464.969 kb on + strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6465.062 kb on + strand, within QEN71_RS29150at 6465.063 kb on - strand, within QEN71_RS29150at 6465.063 kb on - strand, within QEN71_RS29150at 6465.063 kb on - strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.105 kb on - strand, within QEN71_RS29150at 6465.105 kb on - strand, within QEN71_RS29150at 6465.174 kb on - strand, within QEN71_RS29150at 6465.243 kb on - strand, within QEN71_RS29150at 6465.243 kb on - strand, within QEN71_RS29150at 6465.363 kb on + strandat 6465.364 kb on - strandat 6465.515 kb on + strand, within QEN71_RS29155at 6465.515 kb on + strand, within QEN71_RS29155at 6465.530 kb on + strand, within QEN71_RS29155at 6465.531 kb on - strand, within QEN71_RS29155at 6465.531 kb on - strand, within QEN71_RS29155at 6465.626 kb on + strand, within QEN71_RS29155at 6465.627 kb on - strand, within QEN71_RS29155at 6465.627 kb on - strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.723 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.913 kb on + strand, within QEN71_RS29155at 6465.971 kb on + strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6466.032 kb on - strand, within QEN71_RS29155at 6466.048 kb on + strand, within QEN71_RS29155at 6466.048 kb on + strand, within QEN71_RS29155at 6466.094 kb on + strandat 6466.106 kb on + strandat 6466.106 kb on + strandat 6466.106 kb on + strandat 6466.107 kb on - strandat 6466.107 kb on - strandat 6466.107 kb on - strandat 6466.198 kb on + strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.263 kb on + strand, within QEN71_RS29160at 6466.263 kb on + strand, within QEN71_RS29160at 6466.263 kb on + strand, within QEN71_RS29160at 6466.270 kb on + strand, within QEN71_RS29160at 6466.404 kb on + strand, within QEN71_RS29160at 6466.405 kb on - strand, within QEN71_RS29160at 6466.405 kb on - strand, within QEN71_RS29160at 6466.488 kb on + strand, within QEN71_RS29160at 6466.488 kb on + strand, within QEN71_RS29160at 6466.489 kb on - strand, within QEN71_RS29160at 6466.623 kb on + strand, within QEN71_RS29160at 6466.623 kb on + strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.800 kb on + strand, within QEN71_RS29160at 6466.801 kb on - strand, within QEN71_RS29160at 6466.801 kb on - strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,464,570 + QEN71_RS29150 0.16 -2.2
6,464,570 + QEN71_RS29150 0.16 -1.5
6,464,570 + QEN71_RS29150 0.16 -0.5
6,464,571 - QEN71_RS29150 0.16 -1.9
6,464,571 - QEN71_RS29150 0.16 -0.2
6,464,693 + QEN71_RS29150 0.28 +0.0
6,464,694 - QEN71_RS29150 0.28 +0.1
6,464,702 + QEN71_RS29150 0.29 -1.4
6,464,702 + QEN71_RS29150 0.29 -0.9
6,464,702 + QEN71_RS29150 0.29 -1.2
6,464,702 + QEN71_RS29150 0.29 -1.8
6,464,703 - QEN71_RS29150 0.29 +0.3
6,464,703 - QEN71_RS29150 0.29 -2.6
6,464,755 + QEN71_RS29150 0.34 -1.1
6,464,756 - QEN71_RS29150 0.34 -0.1
6,464,756 - QEN71_RS29150 0.34 -1.1
6,464,861 + QEN71_RS29150 0.45 -0.3
6,464,969 + QEN71_RS29150 0.56 -1.2
6,464,970 - QEN71_RS29150 0.56 -2.3
6,464,970 - QEN71_RS29150 0.56 -2.3
6,464,970 - QEN71_RS29150 0.56 -0.6
6,464,970 - QEN71_RS29150 0.56 -2.5
6,465,062 + QEN71_RS29150 0.65 -1.0
6,465,063 - QEN71_RS29150 0.65 -1.7
6,465,063 - QEN71_RS29150 0.65 -1.1
6,465,063 - QEN71_RS29150 0.65 -1.8
6,465,104 + QEN71_RS29150 0.70 -2.1
6,465,104 + QEN71_RS29150 0.70 -1.2
6,465,104 + QEN71_RS29150 0.70 +0.7
6,465,104 + QEN71_RS29150 0.70 -1.3
6,465,105 - QEN71_RS29150 0.70 -1.8
6,465,105 - QEN71_RS29150 0.70 -0.6
6,465,174 - QEN71_RS29150 0.77 -1.1
6,465,243 - QEN71_RS29150 0.84 -0.3
6,465,243 - QEN71_RS29150 0.84 -1.2
6,465,363 + -0.7
6,465,364 - -0.7
6,465,515 + QEN71_RS29155 0.14 -3.5
6,465,515 + QEN71_RS29155 0.14 -0.2
6,465,530 + QEN71_RS29155 0.16 -1.5
6,465,531 - QEN71_RS29155 0.17 -4.4
6,465,531 - QEN71_RS29155 0.17 -4.2
6,465,626 + QEN71_RS29155 0.30 -2.7
6,465,627 - QEN71_RS29155 0.30 -3.5
6,465,627 - QEN71_RS29155 0.30 -3.2
6,465,722 + QEN71_RS29155 0.43 -3.5
6,465,722 + QEN71_RS29155 0.43 -2.3
6,465,722 + QEN71_RS29155 0.43 -2.3
6,465,723 - QEN71_RS29155 0.43 -4.2
6,465,744 - QEN71_RS29155 0.46 -3.3
6,465,744 - QEN71_RS29155 0.46 -2.8
6,465,744 - QEN71_RS29155 0.46 -2.8
6,465,842 + QEN71_RS29155 0.60 -0.2
6,465,842 + QEN71_RS29155 0.60 -1.6
6,465,842 + QEN71_RS29155 0.60 -2.2
6,465,845 + QEN71_RS29155 0.60 -4.0
6,465,845 + QEN71_RS29155 0.60 -4.6
6,465,845 + QEN71_RS29155 0.60 -4.3
6,465,845 + QEN71_RS29155 0.60 -3.2
6,465,845 + QEN71_RS29155 0.60 -2.8
6,465,845 + QEN71_RS29155 0.60 -0.9
6,465,846 - QEN71_RS29155 0.60 -2.3
6,465,846 - QEN71_RS29155 0.60 -2.9
6,465,846 - QEN71_RS29155 0.60 -4.0
6,465,846 - QEN71_RS29155 0.60 -0.5
6,465,913 + QEN71_RS29155 0.70 -3.1
6,465,971 + QEN71_RS29155 0.78 -2.1
6,465,972 - QEN71_RS29155 0.78 -2.5
6,465,972 - QEN71_RS29155 0.78 -4.4
6,465,972 - QEN71_RS29155 0.78 -3.4
6,466,032 - QEN71_RS29155 0.86 -0.2
6,466,048 + QEN71_RS29155 0.88 -4.2
6,466,048 + QEN71_RS29155 0.88 -1.4
6,466,094 + -3.9
6,466,106 + -2.5
6,466,106 + +0.1
6,466,106 + -2.7
6,466,107 - -0.2
6,466,107 - -0.7
6,466,107 - -1.1
6,466,198 + -0.2
6,466,199 - -1.1
6,466,199 - -0.8
6,466,199 - -2.6
6,466,199 - -2.7
6,466,263 + QEN71_RS29160 0.11 -2.4
6,466,263 + QEN71_RS29160 0.11 -1.9
6,466,263 + QEN71_RS29160 0.11 -2.1
6,466,270 + QEN71_RS29160 0.12 -1.8
6,466,404 + QEN71_RS29160 0.23 -5.2
6,466,405 - QEN71_RS29160 0.23 -1.2
6,466,405 - QEN71_RS29160 0.23 -1.6
6,466,488 + QEN71_RS29160 0.30 -0.2
6,466,488 + QEN71_RS29160 0.30 -4.1
6,466,489 - QEN71_RS29160 0.30 -1.9
6,466,623 + QEN71_RS29160 0.41 -1.2
6,466,623 + QEN71_RS29160 0.41 -0.2
6,466,624 - QEN71_RS29160 0.42 -3.2
6,466,624 - QEN71_RS29160 0.42 -3.0
6,466,624 - QEN71_RS29160 0.42 -1.2
6,466,624 - QEN71_RS29160 0.42 -3.0
6,466,800 + QEN71_RS29160 0.56 -1.2
6,466,801 - QEN71_RS29160 0.57 +0.5
6,466,801 - QEN71_RS29160 0.57 -4.2
6,466,949 + QEN71_RS29160 0.69 -2.1
6,466,949 + QEN71_RS29160 0.69 -3.8
6,466,949 + QEN71_RS29160 0.69 -1.7
6,466,949 + QEN71_RS29160 0.69 -3.1
6,466,949 + QEN71_RS29160 0.69 -0.9
6,466,949 + QEN71_RS29160 0.69 -4.8
6,466,949 + QEN71_RS29160 0.69 -3.4
6,466,949 + QEN71_RS29160 0.69 -3.2
6,466,949 + QEN71_RS29160 0.69 -3.1
6,466,949 + QEN71_RS29160 0.69 -3.5
6,466,949 + QEN71_RS29160 0.69 -1.9
6,466,949 + QEN71_RS29160 0.69 -0.8
6,466,949 + QEN71_RS29160 0.69 -3.1
6,466,950 - QEN71_RS29160 0.69 -3.8
6,466,950 - QEN71_RS29160 0.69 -0.5
6,466,950 - QEN71_RS29160 0.69 -0.5
6,466,950 - QEN71_RS29160 0.69 -0.2
6,466,950 - QEN71_RS29160 0.69 -4.7

Or see this region's nucleotide sequence