Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28955

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28950 and QEN71_RS28955 are separated by 331 nucleotidesQEN71_RS28955 and QEN71_RS28960 overlap by 4 nucleotides QEN71_RS28950: QEN71_RS28950 - flagellar biosynthesis protein FlhF, at 6,416,137 to 6,418,020 _RS28950 QEN71_RS28955: QEN71_RS28955 - flagellar biosynthesis protein FlhA, at 6,418,352 to 6,420,451 _RS28955 QEN71_RS28960: QEN71_RS28960 - flagellar biosynthesis protein FlhB, at 6,420,448 to 6,421,656 _RS28960 Position (kb) 6418 6419 6420 6421Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 6417.728 kb on + strand, within QEN71_RS28950at 6417.729 kb on - strand, within QEN71_RS28950at 6417.729 kb on - strand, within QEN71_RS28950at 6417.865 kb on - strandat 6417.865 kb on - strandat 6418.040 kb on - strandat 6418.056 kb on + strandat 6418.056 kb on + strandat 6418.056 kb on + strandat 6418.056 kb on + strandat 6418.080 kb on - strandat 6418.080 kb on - strandat 6418.112 kb on + strandat 6418.112 kb on + strandat 6418.113 kb on - strandat 6418.231 kb on + strandat 6418.231 kb on + strandat 6418.231 kb on + strandat 6418.231 kb on + strandat 6418.232 kb on - strandat 6418.353 kb on + strandat 6418.394 kb on - strandat 6418.410 kb on + strandat 6418.410 kb on + strandat 6419.007 kb on + strand, within QEN71_RS28955at 6419.007 kb on + strand, within QEN71_RS28955at 6419.007 kb on + strand, within QEN71_RS28955at 6419.007 kb on + strand, within QEN71_RS28955at 6419.007 kb on + strand, within QEN71_RS28955at 6419.007 kb on + strand, within QEN71_RS28955at 6419.008 kb on - strand, within QEN71_RS28955at 6419.008 kb on - strand, within QEN71_RS28955at 6419.008 kb on - strand, within QEN71_RS28955at 6419.008 kb on - strand, within QEN71_RS28955at 6419.008 kb on - strand, within QEN71_RS28955at 6419.724 kb on + strand, within QEN71_RS28955at 6419.724 kb on + strand, within QEN71_RS28955at 6419.724 kb on + strand, within QEN71_RS28955at 6419.724 kb on + strand, within QEN71_RS28955at 6419.724 kb on + strand, within QEN71_RS28955at 6419.725 kb on - strand, within QEN71_RS28955at 6419.725 kb on - strand, within QEN71_RS28955at 6419.725 kb on - strand, within QEN71_RS28955at 6419.725 kb on - strand, within QEN71_RS28955at 6419.865 kb on + strand, within QEN71_RS28955at 6419.865 kb on + strand, within QEN71_RS28955at 6419.866 kb on - strand, within QEN71_RS28955at 6420.258 kb on + strandat 6420.258 kb on + strandat 6420.258 kb on + strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.259 kb on - strandat 6420.457 kb on + strandat 6420.457 kb on + strandat 6420.457 kb on + strandat 6420.457 kb on + strandat 6420.457 kb on + strandat 6420.457 kb on + strandat 6420.458 kb on - strandat 6420.458 kb on - strandat 6420.458 kb on - strandat 6420.458 kb on - strandat 6420.465 kb on + strandat 6420.465 kb on + strandat 6420.465 kb on + strandat 6420.465 kb on + strandat 6420.466 kb on - strandat 6420.466 kb on - strandat 6420.466 kb on - strandat 6420.466 kb on - strandat 6420.466 kb on - strandat 6420.614 kb on + strand, within QEN71_RS28960at 6420.615 kb on - strand, within QEN71_RS28960at 6420.689 kb on + strand, within QEN71_RS28960at 6420.689 kb on + strand, within QEN71_RS28960at 6420.689 kb on + strand, within QEN71_RS28960at 6420.689 kb on + strand, within QEN71_RS28960at 6420.690 kb on - strand, within QEN71_RS28960at 6420.690 kb on - strand, within QEN71_RS28960at 6420.822 kb on - strand, within QEN71_RS28960at 6421.025 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.385 kb on + strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.386 kb on - strand, within QEN71_RS28960at 6421.441 kb on + strand, within QEN71_RS28960at 6421.441 kb on + strand, within QEN71_RS28960at 6421.441 kb on + strand, within QEN71_RS28960at 6421.442 kb on - strand, within QEN71_RS28960at 6421.442 kb on - strand, within QEN71_RS28960

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,417,728 + QEN71_RS28950 0.84 -1.5
6,417,729 - QEN71_RS28950 0.85 -2.0
6,417,729 - QEN71_RS28950 0.85 -2.5
6,417,865 - -2.9
6,417,865 - -3.5
6,418,040 - -1.9
6,418,056 + -3.1
6,418,056 + -2.2
6,418,056 + -4.9
6,418,056 + -2.5
6,418,080 - -1.4
6,418,080 - -1.6
6,418,112 + -4.4
6,418,112 + -6.2
6,418,113 - -0.9
6,418,231 + +0.0
6,418,231 + -1.4
6,418,231 + -0.2
6,418,231 + -0.1
6,418,232 - -0.7
6,418,353 + +0.9
6,418,394 - -1.8
6,418,410 + -2.8
6,418,410 + -1.5
6,419,007 + QEN71_RS28955 0.31 -2.4
6,419,007 + QEN71_RS28955 0.31 -1.4
6,419,007 + QEN71_RS28955 0.31 -2.1
6,419,007 + QEN71_RS28955 0.31 -3.3
6,419,007 + QEN71_RS28955 0.31 -3.0
6,419,007 + QEN71_RS28955 0.31 -3.4
6,419,008 - QEN71_RS28955 0.31 -5.0
6,419,008 - QEN71_RS28955 0.31 -3.6
6,419,008 - QEN71_RS28955 0.31 -2.7
6,419,008 - QEN71_RS28955 0.31 -2.6
6,419,008 - QEN71_RS28955 0.31 -3.8
6,419,724 + QEN71_RS28955 0.65 -3.8
6,419,724 + QEN71_RS28955 0.65 -1.6
6,419,724 + QEN71_RS28955 0.65 -4.4
6,419,724 + QEN71_RS28955 0.65 +0.1
6,419,724 + QEN71_RS28955 0.65 -0.2
6,419,725 - QEN71_RS28955 0.65 -5.3
6,419,725 - QEN71_RS28955 0.65 -0.9
6,419,725 - QEN71_RS28955 0.65 -0.5
6,419,725 - QEN71_RS28955 0.65 -4.5
6,419,865 + QEN71_RS28955 0.72 -1.4
6,419,865 + QEN71_RS28955 0.72 -0.5
6,419,866 - QEN71_RS28955 0.72 -2.5
6,420,258 + -1.2
6,420,258 + -0.5
6,420,258 + -2.8
6,420,259 - -3.6
6,420,259 - -1.8
6,420,259 - -2.5
6,420,259 - -1.4
6,420,259 - -2.6
6,420,259 - -4.3
6,420,259 - -3.8
6,420,259 - -4.7
6,420,259 - -2.3
6,420,259 - -4.0
6,420,457 + -0.5
6,420,457 + -2.1
6,420,457 + -2.4
6,420,457 + -1.9
6,420,457 + -3.6
6,420,457 + -1.1
6,420,458 - -1.0
6,420,458 - -3.1
6,420,458 - -4.5
6,420,458 - -3.6
6,420,465 + -0.7
6,420,465 + -2.7
6,420,465 + +0.1
6,420,465 + -0.5
6,420,466 - -0.2
6,420,466 - -0.2
6,420,466 - +0.3
6,420,466 - -0.7
6,420,466 - -1.4
6,420,614 + QEN71_RS28960 0.14 -2.8
6,420,615 - QEN71_RS28960 0.14 -2.4
6,420,689 + QEN71_RS28960 0.20 -0.7
6,420,689 + QEN71_RS28960 0.20 -2.3
6,420,689 + QEN71_RS28960 0.20 -4.7
6,420,689 + QEN71_RS28960 0.20 -3.2
6,420,690 - QEN71_RS28960 0.20 -0.5
6,420,690 - QEN71_RS28960 0.20 -0.9
6,420,822 - QEN71_RS28960 0.31 -0.7
6,421,025 + QEN71_RS28960 0.48 -1.2
6,421,385 + QEN71_RS28960 0.78 -4.4
6,421,385 + QEN71_RS28960 0.78 -5.0
6,421,385 + QEN71_RS28960 0.78 -3.4
6,421,385 + QEN71_RS28960 0.78 -3.4
6,421,385 + QEN71_RS28960 0.78 -2.3
6,421,385 + QEN71_RS28960 0.78 -1.2
6,421,385 + QEN71_RS28960 0.78 -3.0
6,421,385 + QEN71_RS28960 0.78 -0.2
6,421,385 + QEN71_RS28960 0.78 -3.6
6,421,385 + QEN71_RS28960 0.78 -5.0
6,421,385 + QEN71_RS28960 0.78 -1.2
6,421,385 + QEN71_RS28960 0.78 -2.1
6,421,385 + QEN71_RS28960 0.78 -2.3
6,421,385 + QEN71_RS28960 0.78 -3.3
6,421,385 + QEN71_RS28960 0.78 -4.0
6,421,386 - QEN71_RS28960 0.78 -3.7
6,421,386 - QEN71_RS28960 0.78 -1.6
6,421,386 - QEN71_RS28960 0.78 -3.8
6,421,386 - QEN71_RS28960 0.78 -2.4
6,421,386 - QEN71_RS28960 0.78 -2.2
6,421,386 - QEN71_RS28960 0.78 -2.9
6,421,386 - QEN71_RS28960 0.78 -0.5
6,421,386 - QEN71_RS28960 0.78 -2.9
6,421,386 - QEN71_RS28960 0.78 -1.9
6,421,386 - QEN71_RS28960 0.78 -3.6
6,421,386 - QEN71_RS28960 0.78 -3.7
6,421,386 - QEN71_RS28960 0.78 -1.4
6,421,441 + QEN71_RS28960 0.82 -5.9
6,421,441 + QEN71_RS28960 0.82 -2.8
6,421,441 + QEN71_RS28960 0.82 +0.1
6,421,442 - QEN71_RS28960 0.82 -4.2
6,421,442 - QEN71_RS28960 0.82 -0.2

Or see this region's nucleotide sequence