Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28785

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28775 and QEN71_RS28780 are separated by 68 nucleotidesQEN71_RS28780 and QEN71_RS28785 overlap by 4 nucleotidesQEN71_RS28785 and QEN71_RS28790 are separated by 346 nucleotidesQEN71_RS28790 and QEN71_RS28795 are separated by 237 nucleotides QEN71_RS28775: QEN71_RS28775 - flagellar hook-length control protein FliK, at 6,382,097 to 6,383,479 _RS28775 QEN71_RS28780: QEN71_RS28780 - flagellar protein FliT, at 6,383,548 to 6,383,877 _RS28780 QEN71_RS28785: QEN71_RS28785 - flagellar export chaperone FliS, at 6,383,874 to 6,384,308 _RS28785 QEN71_RS28790: QEN71_RS28790 - flagellar hook-basal body complex protein FliE, at 6,384,655 to 6,384,990 _RS28790 QEN71_RS28795: QEN71_RS28795 - flagellar basal-body MS-ring/collar protein FliF, at 6,385,228 to 6,387,012 _RS28795 Position (kb) 6383 6384 6385Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 6382.993 kb on - strand, within QEN71_RS28775at 6382.993 kb on - strand, within QEN71_RS28775at 6382.993 kb on - strand, within QEN71_RS28775at 6383.069 kb on - strand, within QEN71_RS28775at 6383.527 kb on + strandat 6383.527 kb on + strandat 6383.527 kb on + strandat 6383.527 kb on + strandat 6383.527 kb on + strandat 6383.527 kb on + strandat 6383.527 kb on + strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.528 kb on - strandat 6383.561 kb on + strandat 6383.561 kb on + strandat 6383.561 kb on + strandat 6383.562 kb on - strandat 6383.562 kb on - strandat 6383.562 kb on - strandat 6383.859 kb on - strandat 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.030 kb on - strand, within QEN71_RS28785at 6384.031 kb on + strand, within QEN71_RS28785at 6384.031 kb on + strand, within QEN71_RS28785at 6384.031 kb on + strand, within QEN71_RS28785at 6384.031 kb on + strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.032 kb on - strand, within QEN71_RS28785at 6384.035 kb on + strand, within QEN71_RS28785at 6384.035 kb on + strand, within QEN71_RS28785at 6384.035 kb on + strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.036 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.038 kb on - strand, within QEN71_RS28785at 6384.153 kb on - strand, within QEN71_RS28785at 6384.173 kb on + strand, within QEN71_RS28785at 6384.174 kb on - strand, within QEN71_RS28785at 6384.174 kb on - strand, within QEN71_RS28785at 6384.174 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.209 kb on - strand, within QEN71_RS28785at 6384.274 kb on + strandat 6384.275 kb on - strandat 6384.275 kb on - strandat 6384.275 kb on - strandat 6384.323 kb on + strandat 6384.323 kb on + strandat 6384.324 kb on - strandat 6384.324 kb on - strandat 6384.324 kb on - strandat 6384.324 kb on - strandat 6384.409 kb on + strandat 6384.409 kb on + strandat 6384.409 kb on + strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.410 kb on - strandat 6384.429 kb on - strandat 6384.429 kb on - strandat 6384.429 kb on - strandat 6384.429 kb on - strandat 6384.434 kb on + strandat 6384.434 kb on + strandat 6384.435 kb on - strandat 6384.442 kb on + strandat 6384.651 kb on + strandat 6384.651 kb on + strandat 6384.652 kb on - strandat 6384.683 kb on + strandat 6384.683 kb on + strandat 6384.684 kb on - strandat 6385.052 kb on + strandat 6385.052 kb on + strandat 6385.052 kb on + strandat 6385.052 kb on + strandat 6385.052 kb on + strandat 6385.052 kb on + strandat 6385.052 kb on + strandat 6385.084 kb on + strandat 6385.084 kb on + strandat 6385.084 kb on + strandat 6385.084 kb on + strandat 6385.085 kb on - strandat 6385.085 kb on - strandat 6385.104 kb on - strandat 6385.104 kb on - strandat 6385.177 kb on + strandat 6385.177 kb on + strandat 6385.178 kb on - strandat 6385.187 kb on + strandat 6385.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,382,993 - QEN71_RS28775 0.65 -0.3
6,382,993 - QEN71_RS28775 0.65 -2.3
6,382,993 - QEN71_RS28775 0.65 -1.5
6,383,069 - QEN71_RS28775 0.70 -2.2
6,383,527 + +0.0
6,383,527 + +1.5
6,383,527 + +0.1
6,383,527 + +1.1
6,383,527 + +0.9
6,383,527 + -0.7
6,383,527 + +0.2
6,383,528 - -0.1
6,383,528 - -0.5
6,383,528 - -0.7
6,383,528 - -0.1
6,383,528 - +1.6
6,383,528 - +0.4
6,383,528 - -0.1
6,383,528 - -0.0
6,383,528 - +1.9
6,383,528 - +0.9
6,383,528 - +0.4
6,383,528 - +0.5
6,383,528 - -0.7
6,383,528 - +0.3
6,383,528 - +0.6
6,383,561 + -2.9
6,383,561 + -2.0
6,383,561 + -0.6
6,383,562 - -6.1
6,383,562 - -3.6
6,383,562 - -0.7
6,383,859 - +5.1
6,384,030 - QEN71_RS28785 0.36 -3.3
6,384,030 - QEN71_RS28785 0.36 -5.4
6,384,030 - QEN71_RS28785 0.36 -3.3
6,384,030 - QEN71_RS28785 0.36 -1.1
6,384,030 - QEN71_RS28785 0.36 -0.7
6,384,030 - QEN71_RS28785 0.36 -5.9
6,384,030 - QEN71_RS28785 0.36 -4.1
6,384,030 - QEN71_RS28785 0.36 -0.7
6,384,030 - QEN71_RS28785 0.36 -2.1
6,384,030 - QEN71_RS28785 0.36 -3.2
6,384,030 - QEN71_RS28785 0.36 -4.4
6,384,030 - QEN71_RS28785 0.36 -5.5
6,384,030 - QEN71_RS28785 0.36 -5.3
6,384,030 - QEN71_RS28785 0.36 -4.2
6,384,031 + QEN71_RS28785 0.36 +0.1
6,384,031 + QEN71_RS28785 0.36 -0.2
6,384,031 + QEN71_RS28785 0.36 -1.5
6,384,031 + QEN71_RS28785 0.36 -2.8
6,384,032 - QEN71_RS28785 0.36 -5.3
6,384,032 - QEN71_RS28785 0.36 -1.1
6,384,032 - QEN71_RS28785 0.36 -5.3
6,384,032 - QEN71_RS28785 0.36 -1.6
6,384,032 - QEN71_RS28785 0.36 -2.2
6,384,032 - QEN71_RS28785 0.36 -4.0
6,384,032 - QEN71_RS28785 0.36 -4.8
6,384,032 - QEN71_RS28785 0.36 -4.1
6,384,032 - QEN71_RS28785 0.36 -2.1
6,384,032 - QEN71_RS28785 0.36 -6.0
6,384,032 - QEN71_RS28785 0.36 -4.4
6,384,032 - QEN71_RS28785 0.36 -3.3
6,384,032 - QEN71_RS28785 0.36 -1.1
6,384,032 - QEN71_RS28785 0.36 -4.0
6,384,032 - QEN71_RS28785 0.36 -4.2
6,384,032 - QEN71_RS28785 0.36 -1.2
6,384,032 - QEN71_RS28785 0.36 -3.5
6,384,032 - QEN71_RS28785 0.36 -4.2
6,384,032 - QEN71_RS28785 0.36 -4.8
6,384,032 - QEN71_RS28785 0.36 -0.7
6,384,032 - QEN71_RS28785 0.36 -6.4
6,384,032 - QEN71_RS28785 0.36 -5.1
6,384,032 - QEN71_RS28785 0.36 -3.7
6,384,032 - QEN71_RS28785 0.36 -2.6
6,384,032 - QEN71_RS28785 0.36 -3.8
6,384,032 - QEN71_RS28785 0.36 -1.5
6,384,032 - QEN71_RS28785 0.36 -3.6
6,384,032 - QEN71_RS28785 0.36 -3.8
6,384,032 - QEN71_RS28785 0.36 -3.0
6,384,035 + QEN71_RS28785 0.37 -0.9
6,384,035 + QEN71_RS28785 0.37 +0.1
6,384,035 + QEN71_RS28785 0.37 -1.4
6,384,036 - QEN71_RS28785 0.37 -3.3
6,384,036 - QEN71_RS28785 0.37 -4.1
6,384,036 - QEN71_RS28785 0.37 -4.3
6,384,036 - QEN71_RS28785 0.37 -3.1
6,384,036 - QEN71_RS28785 0.37 -4.6
6,384,036 - QEN71_RS28785 0.37 -3.4
6,384,036 - QEN71_RS28785 0.37 -4.2
6,384,036 - QEN71_RS28785 0.37 -2.8
6,384,036 - QEN71_RS28785 0.37 -2.0
6,384,036 - QEN71_RS28785 0.37 -3.6
6,384,036 - QEN71_RS28785 0.37 -3.1
6,384,036 - QEN71_RS28785 0.37 -4.9
6,384,036 - QEN71_RS28785 0.37 -3.1
6,384,036 - QEN71_RS28785 0.37 -0.2
6,384,036 - QEN71_RS28785 0.37 -1.1
6,384,036 - QEN71_RS28785 0.37 -6.0
6,384,036 - QEN71_RS28785 0.37 -4.9
6,384,036 - QEN71_RS28785 0.37 -5.0
6,384,036 - QEN71_RS28785 0.37 -4.8
6,384,036 - QEN71_RS28785 0.37 -5.4
6,384,036 - QEN71_RS28785 0.37 -1.5
6,384,036 - QEN71_RS28785 0.37 +0.1
6,384,036 - QEN71_RS28785 0.37 -5.5
6,384,036 - QEN71_RS28785 0.37 -0.2
6,384,036 - QEN71_RS28785 0.37 -4.2
6,384,036 - QEN71_RS28785 0.37 -4.0
6,384,036 - QEN71_RS28785 0.37 -4.1
6,384,036 - QEN71_RS28785 0.37 -4.6
6,384,036 - QEN71_RS28785 0.37 -1.5
6,384,036 - QEN71_RS28785 0.37 -1.2
6,384,036 - QEN71_RS28785 0.37 -3.3
6,384,036 - QEN71_RS28785 0.37 -3.9
6,384,036 - QEN71_RS28785 0.37 -0.9
6,384,038 - QEN71_RS28785 0.38 -2.6
6,384,038 - QEN71_RS28785 0.38 -2.2
6,384,038 - QEN71_RS28785 0.38 -3.1
6,384,038 - QEN71_RS28785 0.38 -1.5
6,384,038 - QEN71_RS28785 0.38 -5.2
6,384,038 - QEN71_RS28785 0.38 -4.3
6,384,038 - QEN71_RS28785 0.38 -1.4
6,384,038 - QEN71_RS28785 0.38 -5.1
6,384,038 - QEN71_RS28785 0.38 -0.7
6,384,038 - QEN71_RS28785 0.38 -4.1
6,384,038 - QEN71_RS28785 0.38 -3.8
6,384,153 - QEN71_RS28785 0.64 -3.0
6,384,173 + QEN71_RS28785 0.69 +0.1
6,384,174 - QEN71_RS28785 0.69 -4.4
6,384,174 - QEN71_RS28785 0.69 -2.2
6,384,174 - QEN71_RS28785 0.69 -1.6
6,384,209 - QEN71_RS28785 0.77 -3.3
6,384,209 - QEN71_RS28785 0.77 -2.4
6,384,209 - QEN71_RS28785 0.77 -4.5
6,384,209 - QEN71_RS28785 0.77 -4.4
6,384,209 - QEN71_RS28785 0.77 -0.5
6,384,209 - QEN71_RS28785 0.77 -1.6
6,384,209 - QEN71_RS28785 0.77 -2.8
6,384,209 - QEN71_RS28785 0.77 -2.6
6,384,274 + -1.2
6,384,275 - -4.3
6,384,275 - -2.9
6,384,275 - -1.8
6,384,323 + +0.1
6,384,323 + -0.2
6,384,324 - -3.3
6,384,324 - -3.8
6,384,324 - +1.1
6,384,324 - -3.2
6,384,409 + -0.5
6,384,409 + -0.2
6,384,409 + -0.5
6,384,410 - -1.9
6,384,410 - -2.2
6,384,410 - -3.2
6,384,410 - +0.2
6,384,410 - -1.7
6,384,410 - -2.4
6,384,410 - -4.7
6,384,410 - -3.8
6,384,410 - -2.3
6,384,410 - -2.8
6,384,410 - -4.2
6,384,410 - -3.7
6,384,410 - -2.5
6,384,429 - +0.6
6,384,429 - +0.5
6,384,429 - -1.8
6,384,429 - -2.2
6,384,434 + +1.1
6,384,434 + -0.5
6,384,435 - -1.9
6,384,442 + +3.9
6,384,651 + +1.1
6,384,651 + +0.7
6,384,652 - -2.9
6,384,683 + -3.0
6,384,683 + -0.7
6,384,684 - -3.8
6,385,052 + +0.9
6,385,052 + -0.4
6,385,052 + +0.1
6,385,052 + +1.7
6,385,052 + -0.0
6,385,052 + +0.9
6,385,052 + +0.8
6,385,084 + -2.7
6,385,084 + -1.9
6,385,084 + -3.5
6,385,084 + -0.5
6,385,085 - -1.4
6,385,085 - -3.4
6,385,104 - -5.2
6,385,104 - -0.5
6,385,177 + +0.4
6,385,177 + +0.7
6,385,178 - -4.6
6,385,187 + -1.8
6,385,188 - -0.5

Or see this region's nucleotide sequence