Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS28345 and QEN71_RS28350 are separated by 65 nucleotides QEN71_RS28350 and QEN71_RS28355 are separated by 20 nucleotides QEN71_RS28355 and QEN71_RS28360 are separated by 45 nucleotides QEN71_RS28360 and QEN71_RS28365 are separated by 142 nucleotides QEN71_RS28365 and QEN71_RS28370 are separated by 198 nucleotides QEN71_RS28370 and QEN71_RS28375 are separated by 305 nucleotides QEN71_RS28375 and QEN71_RS28380 are separated by 60 nucleotides QEN71_RS28380 and QEN71_RS28385 are separated by 64 nucleotides
QEN71_RS28345: QEN71_RS28345 - elongation factor Tu, at 6,290,518 to 6,291,708
_RS28345
QEN71_RS28350: QEN71_RS28350 - tRNA-Thr, at 6,291,774 to 6,291,848
_RS28350
QEN71_RS28355: QEN71_RS28355 - tRNA-Gly, at 6,291,869 to 6,291,942
_RS28355
QEN71_RS28360: QEN71_RS28360 - tRNA-Tyr, at 6,291,988 to 6,292,073
_RS28360
QEN71_RS28365: QEN71_RS28365 - 5S ribosomal RNA, at 6,292,216 to 6,292,329
_RS28365
QEN71_RS28370: QEN71_RS28370 - 23S ribosomal RNA, at 6,292,528 to 6,295,408
_RS28370
QEN71_RS28375: QEN71_RS28375 - tRNA-Ala, at 6,295,714 to 6,295,789
_RS28375
QEN71_RS28380: QEN71_RS28380 - tRNA-Ile, at 6,295,850 to 6,295,926
_RS28380
QEN71_RS28385: QEN71_RS28385 - 16S ribosomal RNA, at 6,295,991 to 6,297,521
_RS28385
Position (kb)
6292
6293
6294
6295
6296 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6291.771 kb on - strand at 6291.852 kb on - strand at 6291.858 kb on - strand at 6291.858 kb on - strand at 6291.858 kb on - strand at 6291.858 kb on - strand at 6291.858 kb on - strand at 6291.951 kb on - strand at 6291.951 kb on - strand at 6291.951 kb on - strand at 6291.951 kb on - strand at 6291.951 kb on - strand at 6291.951 kb on - strand at 6291.973 kb on - strand at 6292.143 kb on - strand at 6292.143 kb on - strand at 6292.143 kb on - strand at 6292.154 kb on + strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.155 kb on - strand at 6292.157 kb on - strand at 6292.157 kb on - strand at 6292.166 kb on - strand at 6292.166 kb on - strand at 6292.166 kb on - strand at 6293.314 kb on - strand, within QEN71_RS28370 at 6293.314 kb on - strand, within QEN71_RS28370 at 6293.319 kb on - strand, within QEN71_RS28370 at 6293.319 kb on - strand, within QEN71_RS28370 at 6293.319 kb on - strand, within QEN71_RS28370
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 6,291,771 - -1.3 6,291,852 - -0.3 6,291,858 - +0.0 6,291,858 - -0.4 6,291,858 - -0.8 6,291,858 - -2.3 6,291,858 - -0.8 6,291,951 - -0.5 6,291,951 - -0.3 6,291,951 - -0.5 6,291,951 - -1.3 6,291,951 - -2.0 6,291,951 - +0.0 6,291,973 - -2.3 6,292,143 - +0.0 6,292,143 - -0.5 6,292,143 - -0.8 6,292,154 + +0.0 6,292,155 - -1.3 6,292,155 - -1.3 6,292,155 - -2.9 6,292,155 - -1.3 6,292,155 - -0.7 6,292,155 - -1.1 6,292,155 - -0.7 6,292,155 - -0.4 6,292,155 - -0.9 6,292,155 - -0.7 6,292,155 - -0.5 6,292,155 - -2.0 6,292,155 - -0.5 6,292,157 - -1.3 6,292,157 - -1.8 6,292,166 - +1.6 6,292,166 - -0.6 6,292,166 - -0.3 6,293,314 - QEN71_RS28370 0.27 -1.8 6,293,314 - QEN71_RS28370 0.27 -1.7 6,293,319 - QEN71_RS28370 0.27 -1.3 6,293,319 - QEN71_RS28370 0.27 -1.7 6,293,319 - QEN71_RS28370 0.27 -1.5
Or see this region's nucleotide sequence