Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28370

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28345 and QEN71_RS28350 are separated by 65 nucleotidesQEN71_RS28350 and QEN71_RS28355 are separated by 20 nucleotidesQEN71_RS28355 and QEN71_RS28360 are separated by 45 nucleotidesQEN71_RS28360 and QEN71_RS28365 are separated by 142 nucleotidesQEN71_RS28365 and QEN71_RS28370 are separated by 198 nucleotidesQEN71_RS28370 and QEN71_RS28375 are separated by 305 nucleotidesQEN71_RS28375 and QEN71_RS28380 are separated by 60 nucleotidesQEN71_RS28380 and QEN71_RS28385 are separated by 64 nucleotides QEN71_RS28345: QEN71_RS28345 - elongation factor Tu, at 6,290,518 to 6,291,708 _RS28345 QEN71_RS28350: QEN71_RS28350 - tRNA-Thr, at 6,291,774 to 6,291,848 _RS28350 QEN71_RS28355: QEN71_RS28355 - tRNA-Gly, at 6,291,869 to 6,291,942 _RS28355 QEN71_RS28360: QEN71_RS28360 - tRNA-Tyr, at 6,291,988 to 6,292,073 _RS28360 QEN71_RS28365: QEN71_RS28365 - 5S ribosomal RNA, at 6,292,216 to 6,292,329 _RS28365 QEN71_RS28370: QEN71_RS28370 - 23S ribosomal RNA, at 6,292,528 to 6,295,408 _RS28370 QEN71_RS28375: QEN71_RS28375 - tRNA-Ala, at 6,295,714 to 6,295,789 _RS28375 QEN71_RS28380: QEN71_RS28380 - tRNA-Ile, at 6,295,850 to 6,295,926 _RS28380 QEN71_RS28385: QEN71_RS28385 - 16S ribosomal RNA, at 6,295,991 to 6,297,521 _RS28385 Position (kb) 6292 6293 6294 6295 6296Strain fitness (log2 ratio) -3 -2 -1 0 1at 6291.771 kb on - strandat 6291.852 kb on - strandat 6291.858 kb on - strandat 6291.858 kb on - strandat 6291.858 kb on - strandat 6291.858 kb on - strandat 6291.858 kb on - strandat 6291.951 kb on - strandat 6291.951 kb on - strandat 6291.951 kb on - strandat 6291.951 kb on - strandat 6291.951 kb on - strandat 6291.951 kb on - strandat 6291.973 kb on - strandat 6292.143 kb on - strandat 6292.143 kb on - strandat 6292.143 kb on - strandat 6292.154 kb on + strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.155 kb on - strandat 6292.157 kb on - strandat 6292.157 kb on - strandat 6292.166 kb on - strandat 6292.166 kb on - strandat 6292.166 kb on - strandat 6293.314 kb on - strand, within QEN71_RS28370at 6293.314 kb on - strand, within QEN71_RS28370at 6293.319 kb on - strand, within QEN71_RS28370at 6293.319 kb on - strand, within QEN71_RS28370at 6293.319 kb on - strand, within QEN71_RS28370

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,291,771 - -1.3
6,291,852 - -0.3
6,291,858 - +0.0
6,291,858 - -0.4
6,291,858 - -0.8
6,291,858 - -2.3
6,291,858 - -0.8
6,291,951 - -0.5
6,291,951 - -0.3
6,291,951 - -0.5
6,291,951 - -1.3
6,291,951 - -2.0
6,291,951 - +0.0
6,291,973 - -2.3
6,292,143 - +0.0
6,292,143 - -0.5
6,292,143 - -0.8
6,292,154 + +0.0
6,292,155 - -1.3
6,292,155 - -1.3
6,292,155 - -2.9
6,292,155 - -1.3
6,292,155 - -0.7
6,292,155 - -1.1
6,292,155 - -0.7
6,292,155 - -0.4
6,292,155 - -0.9
6,292,155 - -0.7
6,292,155 - -0.5
6,292,155 - -2.0
6,292,155 - -0.5
6,292,157 - -1.3
6,292,157 - -1.8
6,292,166 - +1.6
6,292,166 - -0.6
6,292,166 - -0.3
6,293,314 - QEN71_RS28370 0.27 -1.8
6,293,314 - QEN71_RS28370 0.27 -1.7
6,293,319 - QEN71_RS28370 0.27 -1.3
6,293,319 - QEN71_RS28370 0.27 -1.7
6,293,319 - QEN71_RS28370 0.27 -1.5

Or see this region's nucleotide sequence