Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28095

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28090 and QEN71_RS28095 are separated by 174 nucleotidesQEN71_RS28095 and QEN71_RS28100 are separated by 4 nucleotides QEN71_RS28090: QEN71_RS28090 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 6,246,522 to 6,247,517 _RS28090 QEN71_RS28095: QEN71_RS28095 - c-type cytochrome biogenesis protein CcsB, at 6,247,692 to 6,248,909 _RS28095 QEN71_RS28100: QEN71_RS28100 - cytochrome c biogenesis protein ResB, at 6,248,914 to 6,251,139 _RS28100 Position (kb) 6247 6248 6249Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 6246.692 kb on - strand, within QEN71_RS28090at 6246.692 kb on - strand, within QEN71_RS28090at 6246.692 kb on - strand, within QEN71_RS28090at 6246.692 kb on - strand, within QEN71_RS28090at 6246.692 kb on - strand, within QEN71_RS28090at 6246.700 kb on + strand, within QEN71_RS28090at 6246.700 kb on + strand, within QEN71_RS28090at 6246.700 kb on + strand, within QEN71_RS28090at 6246.700 kb on + strand, within QEN71_RS28090at 6246.701 kb on - strand, within QEN71_RS28090at 6246.701 kb on - strand, within QEN71_RS28090at 6246.701 kb on - strand, within QEN71_RS28090at 6246.701 kb on - strand, within QEN71_RS28090at 6246.715 kb on + strand, within QEN71_RS28090at 6246.715 kb on + strand, within QEN71_RS28090at 6246.716 kb on - strand, within QEN71_RS28090at 6246.716 kb on - strand, within QEN71_RS28090at 6246.716 kb on - strand, within QEN71_RS28090at 6246.790 kb on + strand, within QEN71_RS28090at 6246.790 kb on + strand, within QEN71_RS28090at 6246.790 kb on + strand, within QEN71_RS28090at 6246.791 kb on - strand, within QEN71_RS28090at 6246.791 kb on - strand, within QEN71_RS28090at 6246.791 kb on - strand, within QEN71_RS28090at 6246.791 kb on - strand, within QEN71_RS28090at 6246.791 kb on - strand, within QEN71_RS28090at 6246.791 kb on - strand, within QEN71_RS28090at 6246.791 kb on - strand, within QEN71_RS28090at 6246.913 kb on + strand, within QEN71_RS28090at 6246.913 kb on + strand, within QEN71_RS28090at 6246.914 kb on - strand, within QEN71_RS28090at 6246.914 kb on - strand, within QEN71_RS28090at 6246.914 kb on - strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.985 kb on + strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6246.986 kb on - strand, within QEN71_RS28090at 6247.087 kb on + strand, within QEN71_RS28090at 6247.087 kb on + strand, within QEN71_RS28090at 6247.088 kb on - strand, within QEN71_RS28090at 6247.088 kb on - strand, within QEN71_RS28090at 6247.088 kb on - strand, within QEN71_RS28090at 6247.088 kb on - strand, within QEN71_RS28090at 6247.088 kb on - strand, within QEN71_RS28090at 6247.135 kb on + strand, within QEN71_RS28090at 6247.135 kb on + strand, within QEN71_RS28090at 6247.135 kb on + strand, within QEN71_RS28090at 6247.135 kb on + strand, within QEN71_RS28090at 6247.136 kb on - strand, within QEN71_RS28090at 6247.136 kb on - strand, within QEN71_RS28090at 6247.136 kb on - strand, within QEN71_RS28090at 6247.136 kb on - strand, within QEN71_RS28090at 6247.240 kb on + strand, within QEN71_RS28090at 6247.240 kb on + strand, within QEN71_RS28090at 6247.240 kb on + strand, within QEN71_RS28090at 6247.241 kb on - strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.243 kb on + strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.244 kb on - strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.252 kb on + strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.253 kb on - strand, within QEN71_RS28090at 6247.270 kb on + strand, within QEN71_RS28090at 6247.270 kb on + strand, within QEN71_RS28090at 6247.271 kb on - strand, within QEN71_RS28090at 6247.271 kb on - strand, within QEN71_RS28090at 6247.454 kb on + strandat 6247.454 kb on + strandat 6247.483 kb on + strandat 6247.484 kb on - strandat 6247.484 kb on - strandat 6247.484 kb on - strandat 6247.484 kb on - strandat 6247.484 kb on - strandat 6247.626 kb on - strandat 6247.634 kb on - strandat 6247.693 kb on + strandat 6247.693 kb on + strandat 6247.693 kb on + strandat 6247.693 kb on + strandat 6247.693 kb on + strandat 6247.693 kb on + strandat 6247.693 kb on + strandat 6247.693 kb on + strandat 6247.694 kb on - strandat 6247.694 kb on - strandat 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.714 kb on - strand, within QEN71_RS28095at 6248.916 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,246,692 - QEN71_RS28090 0.17 +0.2
6,246,692 - QEN71_RS28090 0.17 -0.7
6,246,692 - QEN71_RS28090 0.17 -0.2
6,246,692 - QEN71_RS28090 0.17 +0.6
6,246,692 - QEN71_RS28090 0.17 +1.0
6,246,700 + QEN71_RS28090 0.18 +0.2
6,246,700 + QEN71_RS28090 0.18 -0.1
6,246,700 + QEN71_RS28090 0.18 +0.0
6,246,700 + QEN71_RS28090 0.18 -0.5
6,246,701 - QEN71_RS28090 0.18 +1.4
6,246,701 - QEN71_RS28090 0.18 -0.5
6,246,701 - QEN71_RS28090 0.18 +0.7
6,246,701 - QEN71_RS28090 0.18 +0.6
6,246,715 + QEN71_RS28090 0.19 -0.3
6,246,715 + QEN71_RS28090 0.19 +2.2
6,246,716 - QEN71_RS28090 0.19 -0.0
6,246,716 - QEN71_RS28090 0.19 -0.5
6,246,716 - QEN71_RS28090 0.19 +0.7
6,246,790 + QEN71_RS28090 0.27 +1.2
6,246,790 + QEN71_RS28090 0.27 -1.1
6,246,790 + QEN71_RS28090 0.27 -0.3
6,246,791 - QEN71_RS28090 0.27 -1.6
6,246,791 - QEN71_RS28090 0.27 -1.4
6,246,791 - QEN71_RS28090 0.27 +0.1
6,246,791 - QEN71_RS28090 0.27 +0.5
6,246,791 - QEN71_RS28090 0.27 -0.4
6,246,791 - QEN71_RS28090 0.27 -1.2
6,246,791 - QEN71_RS28090 0.27 +0.1
6,246,913 + QEN71_RS28090 0.39 -0.5
6,246,913 + QEN71_RS28090 0.39 +0.9
6,246,914 - QEN71_RS28090 0.39 +1.2
6,246,914 - QEN71_RS28090 0.39 -0.3
6,246,914 - QEN71_RS28090 0.39 +0.7
6,246,985 + QEN71_RS28090 0.46 -1.3
6,246,985 + QEN71_RS28090 0.46 +0.1
6,246,985 + QEN71_RS28090 0.46 -0.9
6,246,985 + QEN71_RS28090 0.46 -1.0
6,246,985 + QEN71_RS28090 0.46 -0.5
6,246,985 + QEN71_RS28090 0.46 +0.2
6,246,985 + QEN71_RS28090 0.46 -0.5
6,246,985 + QEN71_RS28090 0.46 -1.8
6,246,985 + QEN71_RS28090 0.46 +1.4
6,246,985 + QEN71_RS28090 0.46 -0.5
6,246,986 - QEN71_RS28090 0.47 +0.6
6,246,986 - QEN71_RS28090 0.47 +0.2
6,246,986 - QEN71_RS28090 0.47 -0.2
6,246,986 - QEN71_RS28090 0.47 +1.7
6,246,986 - QEN71_RS28090 0.47 -0.9
6,246,986 - QEN71_RS28090 0.47 +0.6
6,246,986 - QEN71_RS28090 0.47 -0.5
6,246,986 - QEN71_RS28090 0.47 +0.6
6,246,986 - QEN71_RS28090 0.47 -0.2
6,246,986 - QEN71_RS28090 0.47 +0.1
6,246,986 - QEN71_RS28090 0.47 -0.1
6,246,986 - QEN71_RS28090 0.47 +0.6
6,246,986 - QEN71_RS28090 0.47 -0.8
6,246,986 - QEN71_RS28090 0.47 +1.1
6,247,087 + QEN71_RS28090 0.57 +0.2
6,247,087 + QEN71_RS28090 0.57 -0.8
6,247,088 - QEN71_RS28090 0.57 +0.4
6,247,088 - QEN71_RS28090 0.57 +1.1
6,247,088 - QEN71_RS28090 0.57 +1.4
6,247,088 - QEN71_RS28090 0.57 +0.4
6,247,088 - QEN71_RS28090 0.57 -0.7
6,247,135 + QEN71_RS28090 0.62 -0.3
6,247,135 + QEN71_RS28090 0.62 +0.5
6,247,135 + QEN71_RS28090 0.62 +0.7
6,247,135 + QEN71_RS28090 0.62 +0.6
6,247,136 - QEN71_RS28090 0.62 -0.1
6,247,136 - QEN71_RS28090 0.62 -1.1
6,247,136 - QEN71_RS28090 0.62 -0.4
6,247,136 - QEN71_RS28090 0.62 +0.5
6,247,240 + QEN71_RS28090 0.72 +0.8
6,247,240 + QEN71_RS28090 0.72 +2.3
6,247,240 + QEN71_RS28090 0.72 -0.0
6,247,241 - QEN71_RS28090 0.72 -0.0
6,247,243 + QEN71_RS28090 0.72 -0.4
6,247,243 + QEN71_RS28090 0.72 +0.4
6,247,243 + QEN71_RS28090 0.72 -0.1
6,247,243 + QEN71_RS28090 0.72 -0.4
6,247,243 + QEN71_RS28090 0.72 -0.9
6,247,243 + QEN71_RS28090 0.72 +0.1
6,247,243 + QEN71_RS28090 0.72 +0.8
6,247,243 + QEN71_RS28090 0.72 -0.8
6,247,243 + QEN71_RS28090 0.72 -0.1
6,247,244 - QEN71_RS28090 0.72 -1.2
6,247,244 - QEN71_RS28090 0.72 +0.5
6,247,244 - QEN71_RS28090 0.72 +0.9
6,247,244 - QEN71_RS28090 0.72 -0.6
6,247,244 - QEN71_RS28090 0.72 +0.2
6,247,244 - QEN71_RS28090 0.72 +1.1
6,247,244 - QEN71_RS28090 0.72 -0.5
6,247,244 - QEN71_RS28090 0.72 -1.4
6,247,244 - QEN71_RS28090 0.72 +1.5
6,247,244 - QEN71_RS28090 0.72 -0.6
6,247,252 + QEN71_RS28090 0.73 +0.1
6,247,252 + QEN71_RS28090 0.73 -0.3
6,247,252 + QEN71_RS28090 0.73 +0.0
6,247,252 + QEN71_RS28090 0.73 +0.8
6,247,252 + QEN71_RS28090 0.73 -1.6
6,247,252 + QEN71_RS28090 0.73 -0.2
6,247,252 + QEN71_RS28090 0.73 -0.0
6,247,252 + QEN71_RS28090 0.73 +0.9
6,247,253 - QEN71_RS28090 0.73 -0.3
6,247,253 - QEN71_RS28090 0.73 -1.8
6,247,253 - QEN71_RS28090 0.73 +0.6
6,247,253 - QEN71_RS28090 0.73 +0.2
6,247,253 - QEN71_RS28090 0.73 -0.3
6,247,253 - QEN71_RS28090 0.73 +1.4
6,247,253 - QEN71_RS28090 0.73 +0.2
6,247,253 - QEN71_RS28090 0.73 -0.5
6,247,270 + QEN71_RS28090 0.75 -0.1
6,247,270 + QEN71_RS28090 0.75 +1.3
6,247,271 - QEN71_RS28090 0.75 +1.1
6,247,271 - QEN71_RS28090 0.75 -0.1
6,247,454 + +1.1
6,247,454 + -0.4
6,247,483 + +0.0
6,247,484 - -1.5
6,247,484 - +0.7
6,247,484 - -0.1
6,247,484 - +1.8
6,247,484 - -1.6
6,247,626 - -0.8
6,247,634 - -0.4
6,247,693 + +0.0
6,247,693 + +0.2
6,247,693 + -0.1
6,247,693 + -0.5
6,247,693 + +0.1
6,247,693 + +1.1
6,247,693 + +0.8
6,247,693 + +0.8
6,247,694 - +0.5
6,247,694 - -0.3
6,248,714 - QEN71_RS28095 0.84 -3.4
6,248,714 - QEN71_RS28095 0.84 -4.9
6,248,714 - QEN71_RS28095 0.84 -3.8
6,248,714 - QEN71_RS28095 0.84 -3.3
6,248,714 - QEN71_RS28095 0.84 -2.2
6,248,714 - QEN71_RS28095 0.84 -2.1
6,248,714 - QEN71_RS28095 0.84 -4.6
6,248,714 - QEN71_RS28095 0.84 -0.8
6,248,714 - QEN71_RS28095 0.84 -3.6
6,248,916 - -0.3

Or see this region's nucleotide sequence