Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS27595 and QEN71_RS27600 are separated by 411 nucleotides QEN71_RS27600 and QEN71_RS27605 are separated by 270 nucleotides
QEN71_RS27595: QEN71_RS27595 - UbiH/UbiF family hydroxylase, at 6,149,992 to 6,151,164
_RS27595
QEN71_RS27600: QEN71_RS27600 - redox-regulated ATPase YchF, at 6,151,576 to 6,152,670
_RS27600
QEN71_RS27605: QEN71_RS27605 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 6,152,941 to 6,154,266
_RS27605
Position (kb)
6151
6152
6153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6151.174 kb on - strand at 6151.174 kb on - strand at 6151.174 kb on - strand at 6151.174 kb on - strand at 6151.174 kb on - strand at 6151.175 kb on + strand at 6151.175 kb on + strand at 6151.175 kb on + strand at 6151.176 kb on - strand at 6151.176 kb on - strand at 6151.366 kb on + strand at 6151.366 kb on + strand at 6151.366 kb on + strand at 6151.366 kb on + strand at 6151.366 kb on + strand at 6151.366 kb on + strand at 6151.366 kb on + strand at 6151.366 kb on + strand at 6151.367 kb on - strand at 6151.367 kb on - strand at 6151.367 kb on - strand at 6151.367 kb on - strand at 6151.367 kb on - strand at 6151.367 kb on - strand at 6151.367 kb on - strand at 6151.367 kb on - strand at 6151.565 kb on + strand at 6151.565 kb on + strand at 6151.565 kb on + strand at 6151.566 kb on - strand at 6151.608 kb on + strand at 6151.609 kb on - strand at 6151.609 kb on - strand at 6151.609 kb on - strand at 6151.609 kb on - strand at 6151.609 kb on - strand at 6151.670 kb on - strand at 6152.188 kb on + strand, within QEN71_RS27600 at 6152.188 kb on + strand, within QEN71_RS27600 at 6152.188 kb on + strand, within QEN71_RS27600 at 6152.189 kb on - strand, within QEN71_RS27600 at 6152.251 kb on + strand, within QEN71_RS27600 at 6152.251 kb on + strand, within QEN71_RS27600 at 6152.252 kb on - strand, within QEN71_RS27600 at 6152.252 kb on - strand, within QEN71_RS27600 at 6152.252 kb on - strand, within QEN71_RS27600 at 6152.252 kb on - strand, within QEN71_RS27600 at 6152.252 kb on - strand, within QEN71_RS27600 at 6152.252 kb on - strand, within QEN71_RS27600 at 6152.422 kb on + strand, within QEN71_RS27600 at 6152.422 kb on + strand, within QEN71_RS27600 at 6152.422 kb on + strand, within QEN71_RS27600 at 6152.422 kb on + strand, within QEN71_RS27600 at 6152.422 kb on + strand, within QEN71_RS27600 at 6152.422 kb on + strand, within QEN71_RS27600 at 6152.422 kb on + strand, within QEN71_RS27600 at 6152.423 kb on - strand, within QEN71_RS27600 at 6152.423 kb on - strand, within QEN71_RS27600 at 6152.423 kb on - strand, within QEN71_RS27600 at 6152.423 kb on - strand, within QEN71_RS27600 at 6152.423 kb on - strand, within QEN71_RS27600 at 6152.423 kb on - strand, within QEN71_RS27600 at 6152.423 kb on - strand, within QEN71_RS27600 at 6152.557 kb on + strand, within QEN71_RS27600 at 6152.557 kb on + strand, within QEN71_RS27600 at 6152.557 kb on + strand, within QEN71_RS27600 at 6152.557 kb on + strand, within QEN71_RS27600 at 6152.566 kb on + strand at 6152.566 kb on + strand at 6152.566 kb on + strand at 6152.566 kb on + strand at 6152.566 kb on + strand at 6152.566 kb on + strand at 6152.567 kb on - strand at 6152.623 kb on + strand at 6152.623 kb on + strand at 6152.623 kb on + strand at 6152.623 kb on + strand at 6152.623 kb on + strand at 6152.624 kb on - strand at 6152.624 kb on - strand at 6152.624 kb on - strand at 6152.682 kb on + strand at 6152.683 kb on - strand at 6152.700 kb on + strand at 6152.700 kb on + strand at 6152.700 kb on + strand at 6152.701 kb on - strand at 6152.821 kb on + strand at 6152.821 kb on + strand at 6152.821 kb on + strand at 6152.822 kb on - strand at 6152.822 kb on - strand at 6152.822 kb on - strand at 6152.822 kb on - strand at 6152.822 kb on - strand at 6152.822 kb on - strand at 6152.847 kb on + strand at 6152.847 kb on + strand at 6152.847 kb on + strand at 6152.847 kb on + strand at 6152.847 kb on + strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.848 kb on - strand at 6152.854 kb on - strand at 6152.854 kb on - strand at 6152.854 kb on - strand at 6152.854 kb on - strand at 6152.854 kb on - strand at 6152.854 kb on - strand at 6152.854 kb on - strand at 6152.892 kb on + strand at 6152.892 kb on + strand at 6152.893 kb on - strand at 6152.893 kb on - strand at 6152.893 kb on - strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.928 kb on + strand at 6152.929 kb on - strand at 6152.929 kb on - strand at 6152.929 kb on - strand at 6152.929 kb on - strand at 6152.929 kb on - strand at 6152.929 kb on - strand at 6152.970 kb on - strand at 6152.984 kb on + strand at 6152.984 kb on + strand at 6152.984 kb on + strand at 6152.985 kb on - strand at 6153.001 kb on + strand at 6153.001 kb on + strand at 6153.001 kb on + strand at 6153.112 kb on + strand, within QEN71_RS27605 at 6153.113 kb on - strand, within QEN71_RS27605 at 6153.113 kb on - strand, within QEN71_RS27605 at 6153.113 kb on - strand, within QEN71_RS27605 at 6153.113 kb on - strand, within QEN71_RS27605 at 6153.142 kb on + strand, within QEN71_RS27605 at 6153.142 kb on + strand, within QEN71_RS27605 at 6153.142 kb on + strand, within QEN71_RS27605 at 6153.142 kb on + strand, within QEN71_RS27605 at 6153.143 kb on - strand, within QEN71_RS27605 at 6153.143 kb on - strand, within QEN71_RS27605 at 6153.143 kb on - strand, within QEN71_RS27605 at 6153.143 kb on - strand, within QEN71_RS27605 at 6153.175 kb on + strand, within QEN71_RS27605 at 6153.211 kb on + strand, within QEN71_RS27605 at 6153.211 kb on + strand, within QEN71_RS27605 at 6153.211 kb on + strand, within QEN71_RS27605 at 6153.212 kb on - strand, within QEN71_RS27605 at 6153.212 kb on - strand, within QEN71_RS27605 at 6153.212 kb on - strand, within QEN71_RS27605 at 6153.212 kb on - strand, within QEN71_RS27605 at 6153.212 kb on - strand, within QEN71_RS27605 at 6153.212 kb on - strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.331 kb on + strand, within QEN71_RS27605 at 6153.332 kb on - strand, within QEN71_RS27605 at 6153.332 kb on - strand, within QEN71_RS27605 at 6153.332 kb on - strand, within QEN71_RS27605 at 6153.332 kb on - strand, within QEN71_RS27605 at 6153.332 kb on - strand, within QEN71_RS27605 at 6153.332 kb on - strand, within QEN71_RS27605 at 6153.334 kb on + strand, within QEN71_RS27605 at 6153.334 kb on + strand, within QEN71_RS27605 at 6153.334 kb on + strand, within QEN71_RS27605 at 6153.334 kb on + strand, within QEN71_RS27605 at 6153.334 kb on + strand, within QEN71_RS27605 at 6153.334 kb on + strand, within QEN71_RS27605 at 6153.334 kb on + strand, within QEN71_RS27605 at 6153.335 kb on - strand, within QEN71_RS27605 at 6153.335 kb on - strand, within QEN71_RS27605 at 6153.335 kb on - strand, within QEN71_RS27605 at 6153.335 kb on - strand, within QEN71_RS27605 at 6153.398 kb on - strand, within QEN71_RS27605 at 6153.398 kb on - strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.400 kb on + strand, within QEN71_RS27605 at 6153.401 kb on - strand, within QEN71_RS27605 at 6153.401 kb on - strand, within QEN71_RS27605 at 6153.401 kb on - strand, within QEN71_RS27605 at 6153.401 kb on - strand, within QEN71_RS27605 at 6153.401 kb on - strand, within QEN71_RS27605 at 6153.401 kb on - strand, within QEN71_RS27605 at 6153.401 kb on - strand, within QEN71_RS27605 at 6153.515 kb on - strand, within QEN71_RS27605 at 6153.553 kb on + strand, within QEN71_RS27605 at 6153.553 kb on + strand, within QEN71_RS27605 at 6153.553 kb on + strand, within QEN71_RS27605 at 6153.554 kb on - strand, within QEN71_RS27605 at 6153.554 kb on - strand, within QEN71_RS27605
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 6,151,174 - -0.6 6,151,174 - -0.0 6,151,174 - -1.3 6,151,174 - +0.7 6,151,174 - +0.2 6,151,175 + -0.3 6,151,175 + -0.1 6,151,175 + +1.0 6,151,176 - -0.7 6,151,176 - +0.5 6,151,366 + -0.3 6,151,366 + -0.6 6,151,366 + -0.6 6,151,366 + +0.3 6,151,366 + -0.4 6,151,366 + +1.3 6,151,366 + -0.5 6,151,366 + -0.3 6,151,367 - -1.2 6,151,367 - -0.1 6,151,367 - +0.8 6,151,367 - -0.6 6,151,367 - -0.8 6,151,367 - -0.3 6,151,367 - -0.2 6,151,367 - +0.7 6,151,565 + -0.7 6,151,565 + -1.3 6,151,565 + -0.6 6,151,566 - +0.4 6,151,608 + -0.0 6,151,609 - -1.7 6,151,609 - -2.5 6,151,609 - -1.2 6,151,609 - -1.3 6,151,609 - -0.8 6,151,670 - -1.4 6,152,188 + QEN71_RS27600 0.56 -2.7 6,152,188 + QEN71_RS27600 0.56 -1.5 6,152,188 + QEN71_RS27600 0.56 -0.3 6,152,189 - QEN71_RS27600 0.56 -0.6 6,152,251 + QEN71_RS27600 0.62 -2.0 6,152,251 + QEN71_RS27600 0.62 -1.0 6,152,252 - QEN71_RS27600 0.62 -1.3 6,152,252 - QEN71_RS27600 0.62 -1.9 6,152,252 - QEN71_RS27600 0.62 -0.0 6,152,252 - QEN71_RS27600 0.62 -1.0 6,152,252 - QEN71_RS27600 0.62 -1.5 6,152,252 - QEN71_RS27600 0.62 -0.9 6,152,422 + QEN71_RS27600 0.77 -1.9 6,152,422 + QEN71_RS27600 0.77 -0.3 6,152,422 + QEN71_RS27600 0.77 -1.3 6,152,422 + QEN71_RS27600 0.77 -1.3 6,152,422 + QEN71_RS27600 0.77 -1.2 6,152,422 + QEN71_RS27600 0.77 -1.3 6,152,422 + QEN71_RS27600 0.77 -0.6 6,152,423 - QEN71_RS27600 0.77 -1.6 6,152,423 - QEN71_RS27600 0.77 -1.0 6,152,423 - QEN71_RS27600 0.77 -0.3 6,152,423 - QEN71_RS27600 0.77 -0.8 6,152,423 - QEN71_RS27600 0.77 -0.8 6,152,423 - QEN71_RS27600 0.77 -1.0 6,152,423 - QEN71_RS27600 0.77 -1.7 6,152,557 + QEN71_RS27600 0.90 -0.0 6,152,557 + QEN71_RS27600 0.90 -1.7 6,152,557 + QEN71_RS27600 0.90 -1.9 6,152,557 + QEN71_RS27600 0.90 -1.3 6,152,566 + -1.6 6,152,566 + -0.3 6,152,566 + -2.5 6,152,566 + -0.0 6,152,566 + -1.2 6,152,566 + -1.0 6,152,567 - -0.8 6,152,623 + -0.8 6,152,623 + -1.0 6,152,623 + -1.9 6,152,623 + -0.0 6,152,623 + -1.0 6,152,624 - -0.0 6,152,624 - -0.6 6,152,624 - -1.5 6,152,682 + -1.0 6,152,683 - +1.0 6,152,700 + +0.6 6,152,700 + +0.4 6,152,700 + +1.0 6,152,701 - +0.8 6,152,821 + -0.7 6,152,821 + -0.3 6,152,821 + +0.1 6,152,822 - -0.1 6,152,822 - -0.1 6,152,822 - -1.3 6,152,822 - -0.8 6,152,822 - +0.0 6,152,822 - +0.0 6,152,847 + -0.6 6,152,847 + +0.8 6,152,847 + -0.7 6,152,847 + +1.0 6,152,847 + +0.5 6,152,848 - -0.8 6,152,848 - +1.6 6,152,848 - -0.5 6,152,848 - -1.0 6,152,848 - +0.2 6,152,848 - -0.0 6,152,848 - -0.3 6,152,848 - +0.3 6,152,848 - -0.6 6,152,848 - +0.5 6,152,848 - -1.6 6,152,848 - +2.6 6,152,848 - +1.0 6,152,848 - +1.2 6,152,848 - -3.0 6,152,848 - -0.7 6,152,848 - +0.0 6,152,854 - +0.8 6,152,854 - -1.1 6,152,854 - -0.6 6,152,854 - -0.3 6,152,854 - -0.4 6,152,854 - +0.5 6,152,854 - +2.3 6,152,892 + -0.4 6,152,892 + -0.3 6,152,893 - -0.6 6,152,893 - +0.0 6,152,893 - -0.3 6,152,928 + +1.0 6,152,928 + -0.2 6,152,928 + +1.7 6,152,928 + +0.8 6,152,928 + -1.3 6,152,928 + -0.3 6,152,928 + +0.0 6,152,928 + +0.5 6,152,928 + -1.0 6,152,929 - +1.3 6,152,929 - +1.1 6,152,929 - -0.0 6,152,929 - -2.8 6,152,929 - -0.5 6,152,929 - +0.2 6,152,970 - +0.0 6,152,984 + +0.0 6,152,984 + +0.2 6,152,984 + -0.2 6,152,985 - -0.5 6,153,001 + -0.5 6,153,001 + -0.8 6,153,001 + +0.1 6,153,112 + QEN71_RS27605 0.13 -2.0 6,153,113 - QEN71_RS27605 0.13 +0.9 6,153,113 - QEN71_RS27605 0.13 -0.6 6,153,113 - QEN71_RS27605 0.13 +1.6 6,153,113 - QEN71_RS27605 0.13 +1.4 6,153,142 + QEN71_RS27605 0.15 +1.6 6,153,142 + QEN71_RS27605 0.15 -0.5 6,153,142 + QEN71_RS27605 0.15 +0.2 6,153,142 + QEN71_RS27605 0.15 +0.0 6,153,143 - QEN71_RS27605 0.15 +0.2 6,153,143 - QEN71_RS27605 0.15 +0.0 6,153,143 - QEN71_RS27605 0.15 -0.5 6,153,143 - QEN71_RS27605 0.15 +0.6 6,153,175 + QEN71_RS27605 0.18 +0.4 6,153,211 + QEN71_RS27605 0.20 +0.4 6,153,211 + QEN71_RS27605 0.20 -0.2 6,153,211 + QEN71_RS27605 0.20 -0.6 6,153,212 - QEN71_RS27605 0.20 +0.7 6,153,212 - QEN71_RS27605 0.20 +1.6 6,153,212 - QEN71_RS27605 0.20 +0.2 6,153,212 - QEN71_RS27605 0.20 +0.0 6,153,212 - QEN71_RS27605 0.20 +0.6 6,153,212 - QEN71_RS27605 0.20 +0.3 6,153,331 + QEN71_RS27605 0.29 +0.7 6,153,331 + QEN71_RS27605 0.29 -0.6 6,153,331 + QEN71_RS27605 0.29 -0.6 6,153,331 + QEN71_RS27605 0.29 +0.2 6,153,331 + QEN71_RS27605 0.29 +0.8 6,153,331 + QEN71_RS27605 0.29 +0.8 6,153,331 + QEN71_RS27605 0.29 -1.0 6,153,331 + QEN71_RS27605 0.29 -0.3 6,153,331 + QEN71_RS27605 0.29 +0.1 6,153,331 + QEN71_RS27605 0.29 -0.2 6,153,331 + QEN71_RS27605 0.29 +0.9 6,153,332 - QEN71_RS27605 0.29 -0.5 6,153,332 - QEN71_RS27605 0.29 -0.1 6,153,332 - QEN71_RS27605 0.29 -0.5 6,153,332 - QEN71_RS27605 0.29 -0.3 6,153,332 - QEN71_RS27605 0.29 -0.6 6,153,332 - QEN71_RS27605 0.29 -0.6 6,153,334 + QEN71_RS27605 0.30 -1.4 6,153,334 + QEN71_RS27605 0.30 +0.4 6,153,334 + QEN71_RS27605 0.30 -1.7 6,153,334 + QEN71_RS27605 0.30 +0.2 6,153,334 + QEN71_RS27605 0.30 -2.4 6,153,334 + QEN71_RS27605 0.30 -0.1 6,153,334 + QEN71_RS27605 0.30 -0.2 6,153,335 - QEN71_RS27605 0.30 +2.1 6,153,335 - QEN71_RS27605 0.30 +0.2 6,153,335 - QEN71_RS27605 0.30 -0.7 6,153,335 - QEN71_RS27605 0.30 -3.2 6,153,398 - QEN71_RS27605 0.34 -0.6 6,153,398 - QEN71_RS27605 0.34 +0.2 6,153,400 + QEN71_RS27605 0.35 +0.2 6,153,400 + QEN71_RS27605 0.35 +0.7 6,153,400 + QEN71_RS27605 0.35 +0.2 6,153,400 + QEN71_RS27605 0.35 +0.0 6,153,400 + QEN71_RS27605 0.35 -1.0 6,153,400 + QEN71_RS27605 0.35 -0.4 6,153,400 + QEN71_RS27605 0.35 +0.6 6,153,400 + QEN71_RS27605 0.35 +0.7 6,153,400 + QEN71_RS27605 0.35 -0.0 6,153,400 + QEN71_RS27605 0.35 +0.7 6,153,401 - QEN71_RS27605 0.35 +0.1 6,153,401 - QEN71_RS27605 0.35 -0.3 6,153,401 - QEN71_RS27605 0.35 +0.3 6,153,401 - QEN71_RS27605 0.35 -1.0 6,153,401 - QEN71_RS27605 0.35 +0.2 6,153,401 - QEN71_RS27605 0.35 +0.1 6,153,401 - QEN71_RS27605 0.35 -0.2 6,153,515 - QEN71_RS27605 0.43 -0.4 6,153,553 + QEN71_RS27605 0.46 -1.9 6,153,553 + QEN71_RS27605 0.46 -1.4 6,153,553 + QEN71_RS27605 0.46 -1.3 6,153,554 - QEN71_RS27605 0.46 -0.2 6,153,554 - QEN71_RS27605 0.46 +0.5
Or see this region's nucleotide sequence