Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27600

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27595 and QEN71_RS27600 are separated by 411 nucleotidesQEN71_RS27600 and QEN71_RS27605 are separated by 270 nucleotides QEN71_RS27595: QEN71_RS27595 - UbiH/UbiF family hydroxylase, at 6,149,992 to 6,151,164 _RS27595 QEN71_RS27600: QEN71_RS27600 - redox-regulated ATPase YchF, at 6,151,576 to 6,152,670 _RS27600 QEN71_RS27605: QEN71_RS27605 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 6,152,941 to 6,154,266 _RS27605 Position (kb) 6151 6152 6153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6151.174 kb on - strandat 6151.174 kb on - strandat 6151.174 kb on - strandat 6151.174 kb on - strandat 6151.174 kb on - strandat 6151.175 kb on + strandat 6151.175 kb on + strandat 6151.175 kb on + strandat 6151.176 kb on - strandat 6151.176 kb on - strandat 6151.366 kb on + strandat 6151.366 kb on + strandat 6151.366 kb on + strandat 6151.366 kb on + strandat 6151.366 kb on + strandat 6151.366 kb on + strandat 6151.366 kb on + strandat 6151.366 kb on + strandat 6151.367 kb on - strandat 6151.367 kb on - strandat 6151.367 kb on - strandat 6151.367 kb on - strandat 6151.367 kb on - strandat 6151.367 kb on - strandat 6151.367 kb on - strandat 6151.367 kb on - strandat 6151.565 kb on + strandat 6151.565 kb on + strandat 6151.565 kb on + strandat 6151.566 kb on - strandat 6151.608 kb on + strandat 6151.609 kb on - strandat 6151.609 kb on - strandat 6151.609 kb on - strandat 6151.609 kb on - strandat 6151.609 kb on - strandat 6151.670 kb on - strandat 6152.188 kb on + strand, within QEN71_RS27600at 6152.188 kb on + strand, within QEN71_RS27600at 6152.188 kb on + strand, within QEN71_RS27600at 6152.189 kb on - strand, within QEN71_RS27600at 6152.251 kb on + strand, within QEN71_RS27600at 6152.251 kb on + strand, within QEN71_RS27600at 6152.252 kb on - strand, within QEN71_RS27600at 6152.252 kb on - strand, within QEN71_RS27600at 6152.252 kb on - strand, within QEN71_RS27600at 6152.252 kb on - strand, within QEN71_RS27600at 6152.252 kb on - strand, within QEN71_RS27600at 6152.252 kb on - strand, within QEN71_RS27600at 6152.422 kb on + strand, within QEN71_RS27600at 6152.422 kb on + strand, within QEN71_RS27600at 6152.422 kb on + strand, within QEN71_RS27600at 6152.422 kb on + strand, within QEN71_RS27600at 6152.422 kb on + strand, within QEN71_RS27600at 6152.422 kb on + strand, within QEN71_RS27600at 6152.422 kb on + strand, within QEN71_RS27600at 6152.423 kb on - strand, within QEN71_RS27600at 6152.423 kb on - strand, within QEN71_RS27600at 6152.423 kb on - strand, within QEN71_RS27600at 6152.423 kb on - strand, within QEN71_RS27600at 6152.423 kb on - strand, within QEN71_RS27600at 6152.423 kb on - strand, within QEN71_RS27600at 6152.423 kb on - strand, within QEN71_RS27600at 6152.557 kb on + strand, within QEN71_RS27600at 6152.557 kb on + strand, within QEN71_RS27600at 6152.557 kb on + strand, within QEN71_RS27600at 6152.557 kb on + strand, within QEN71_RS27600at 6152.566 kb on + strandat 6152.566 kb on + strandat 6152.566 kb on + strandat 6152.566 kb on + strandat 6152.566 kb on + strandat 6152.566 kb on + strandat 6152.567 kb on - strandat 6152.623 kb on + strandat 6152.623 kb on + strandat 6152.623 kb on + strandat 6152.623 kb on + strandat 6152.623 kb on + strandat 6152.624 kb on - strandat 6152.624 kb on - strandat 6152.624 kb on - strandat 6152.682 kb on + strandat 6152.683 kb on - strandat 6152.700 kb on + strandat 6152.700 kb on + strandat 6152.700 kb on + strandat 6152.701 kb on - strandat 6152.821 kb on + strandat 6152.821 kb on + strandat 6152.821 kb on + strandat 6152.822 kb on - strandat 6152.822 kb on - strandat 6152.822 kb on - strandat 6152.822 kb on - strandat 6152.822 kb on - strandat 6152.822 kb on - strandat 6152.847 kb on + strandat 6152.847 kb on + strandat 6152.847 kb on + strandat 6152.847 kb on + strandat 6152.847 kb on + strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.848 kb on - strandat 6152.854 kb on - strandat 6152.854 kb on - strandat 6152.854 kb on - strandat 6152.854 kb on - strandat 6152.854 kb on - strandat 6152.854 kb on - strandat 6152.854 kb on - strandat 6152.892 kb on + strandat 6152.892 kb on + strandat 6152.893 kb on - strandat 6152.893 kb on - strandat 6152.893 kb on - strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.928 kb on + strandat 6152.929 kb on - strandat 6152.929 kb on - strandat 6152.929 kb on - strandat 6152.929 kb on - strandat 6152.929 kb on - strandat 6152.929 kb on - strandat 6152.970 kb on - strandat 6152.984 kb on + strandat 6152.984 kb on + strandat 6152.984 kb on + strandat 6152.985 kb on - strandat 6153.001 kb on + strandat 6153.001 kb on + strandat 6153.001 kb on + strandat 6153.112 kb on + strand, within QEN71_RS27605at 6153.113 kb on - strand, within QEN71_RS27605at 6153.113 kb on - strand, within QEN71_RS27605at 6153.113 kb on - strand, within QEN71_RS27605at 6153.113 kb on - strand, within QEN71_RS27605at 6153.142 kb on + strand, within QEN71_RS27605at 6153.142 kb on + strand, within QEN71_RS27605at 6153.142 kb on + strand, within QEN71_RS27605at 6153.142 kb on + strand, within QEN71_RS27605at 6153.143 kb on - strand, within QEN71_RS27605at 6153.143 kb on - strand, within QEN71_RS27605at 6153.143 kb on - strand, within QEN71_RS27605at 6153.143 kb on - strand, within QEN71_RS27605at 6153.175 kb on + strand, within QEN71_RS27605at 6153.211 kb on + strand, within QEN71_RS27605at 6153.211 kb on + strand, within QEN71_RS27605at 6153.211 kb on + strand, within QEN71_RS27605at 6153.212 kb on - strand, within QEN71_RS27605at 6153.212 kb on - strand, within QEN71_RS27605at 6153.212 kb on - strand, within QEN71_RS27605at 6153.212 kb on - strand, within QEN71_RS27605at 6153.212 kb on - strand, within QEN71_RS27605at 6153.212 kb on - strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.331 kb on + strand, within QEN71_RS27605at 6153.332 kb on - strand, within QEN71_RS27605at 6153.332 kb on - strand, within QEN71_RS27605at 6153.332 kb on - strand, within QEN71_RS27605at 6153.332 kb on - strand, within QEN71_RS27605at 6153.332 kb on - strand, within QEN71_RS27605at 6153.332 kb on - strand, within QEN71_RS27605at 6153.334 kb on + strand, within QEN71_RS27605at 6153.334 kb on + strand, within QEN71_RS27605at 6153.334 kb on + strand, within QEN71_RS27605at 6153.334 kb on + strand, within QEN71_RS27605at 6153.334 kb on + strand, within QEN71_RS27605at 6153.334 kb on + strand, within QEN71_RS27605at 6153.334 kb on + strand, within QEN71_RS27605at 6153.335 kb on - strand, within QEN71_RS27605at 6153.335 kb on - strand, within QEN71_RS27605at 6153.335 kb on - strand, within QEN71_RS27605at 6153.335 kb on - strand, within QEN71_RS27605at 6153.398 kb on - strand, within QEN71_RS27605at 6153.398 kb on - strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.400 kb on + strand, within QEN71_RS27605at 6153.401 kb on - strand, within QEN71_RS27605at 6153.401 kb on - strand, within QEN71_RS27605at 6153.401 kb on - strand, within QEN71_RS27605at 6153.401 kb on - strand, within QEN71_RS27605at 6153.401 kb on - strand, within QEN71_RS27605at 6153.401 kb on - strand, within QEN71_RS27605at 6153.401 kb on - strand, within QEN71_RS27605at 6153.515 kb on - strand, within QEN71_RS27605at 6153.553 kb on + strand, within QEN71_RS27605at 6153.553 kb on + strand, within QEN71_RS27605at 6153.553 kb on + strand, within QEN71_RS27605at 6153.554 kb on - strand, within QEN71_RS27605at 6153.554 kb on - strand, within QEN71_RS27605

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,151,174 - -0.6
6,151,174 - -0.0
6,151,174 - -1.3
6,151,174 - +0.7
6,151,174 - +0.2
6,151,175 + -0.3
6,151,175 + -0.1
6,151,175 + +1.0
6,151,176 - -0.7
6,151,176 - +0.5
6,151,366 + -0.3
6,151,366 + -0.6
6,151,366 + -0.6
6,151,366 + +0.3
6,151,366 + -0.4
6,151,366 + +1.3
6,151,366 + -0.5
6,151,366 + -0.3
6,151,367 - -1.2
6,151,367 - -0.1
6,151,367 - +0.8
6,151,367 - -0.6
6,151,367 - -0.8
6,151,367 - -0.3
6,151,367 - -0.2
6,151,367 - +0.7
6,151,565 + -0.7
6,151,565 + -1.3
6,151,565 + -0.6
6,151,566 - +0.4
6,151,608 + -0.0
6,151,609 - -1.7
6,151,609 - -2.5
6,151,609 - -1.2
6,151,609 - -1.3
6,151,609 - -0.8
6,151,670 - -1.4
6,152,188 + QEN71_RS27600 0.56 -2.7
6,152,188 + QEN71_RS27600 0.56 -1.5
6,152,188 + QEN71_RS27600 0.56 -0.3
6,152,189 - QEN71_RS27600 0.56 -0.6
6,152,251 + QEN71_RS27600 0.62 -2.0
6,152,251 + QEN71_RS27600 0.62 -1.0
6,152,252 - QEN71_RS27600 0.62 -1.3
6,152,252 - QEN71_RS27600 0.62 -1.9
6,152,252 - QEN71_RS27600 0.62 -0.0
6,152,252 - QEN71_RS27600 0.62 -1.0
6,152,252 - QEN71_RS27600 0.62 -1.5
6,152,252 - QEN71_RS27600 0.62 -0.9
6,152,422 + QEN71_RS27600 0.77 -1.9
6,152,422 + QEN71_RS27600 0.77 -0.3
6,152,422 + QEN71_RS27600 0.77 -1.3
6,152,422 + QEN71_RS27600 0.77 -1.3
6,152,422 + QEN71_RS27600 0.77 -1.2
6,152,422 + QEN71_RS27600 0.77 -1.3
6,152,422 + QEN71_RS27600 0.77 -0.6
6,152,423 - QEN71_RS27600 0.77 -1.6
6,152,423 - QEN71_RS27600 0.77 -1.0
6,152,423 - QEN71_RS27600 0.77 -0.3
6,152,423 - QEN71_RS27600 0.77 -0.8
6,152,423 - QEN71_RS27600 0.77 -0.8
6,152,423 - QEN71_RS27600 0.77 -1.0
6,152,423 - QEN71_RS27600 0.77 -1.7
6,152,557 + QEN71_RS27600 0.90 -0.0
6,152,557 + QEN71_RS27600 0.90 -1.7
6,152,557 + QEN71_RS27600 0.90 -1.9
6,152,557 + QEN71_RS27600 0.90 -1.3
6,152,566 + -1.6
6,152,566 + -0.3
6,152,566 + -2.5
6,152,566 + -0.0
6,152,566 + -1.2
6,152,566 + -1.0
6,152,567 - -0.8
6,152,623 + -0.8
6,152,623 + -1.0
6,152,623 + -1.9
6,152,623 + -0.0
6,152,623 + -1.0
6,152,624 - -0.0
6,152,624 - -0.6
6,152,624 - -1.5
6,152,682 + -1.0
6,152,683 - +1.0
6,152,700 + +0.6
6,152,700 + +0.4
6,152,700 + +1.0
6,152,701 - +0.8
6,152,821 + -0.7
6,152,821 + -0.3
6,152,821 + +0.1
6,152,822 - -0.1
6,152,822 - -0.1
6,152,822 - -1.3
6,152,822 - -0.8
6,152,822 - +0.0
6,152,822 - +0.0
6,152,847 + -0.6
6,152,847 + +0.8
6,152,847 + -0.7
6,152,847 + +1.0
6,152,847 + +0.5
6,152,848 - -0.8
6,152,848 - +1.6
6,152,848 - -0.5
6,152,848 - -1.0
6,152,848 - +0.2
6,152,848 - -0.0
6,152,848 - -0.3
6,152,848 - +0.3
6,152,848 - -0.6
6,152,848 - +0.5
6,152,848 - -1.6
6,152,848 - +2.6
6,152,848 - +1.0
6,152,848 - +1.2
6,152,848 - -3.0
6,152,848 - -0.7
6,152,848 - +0.0
6,152,854 - +0.8
6,152,854 - -1.1
6,152,854 - -0.6
6,152,854 - -0.3
6,152,854 - -0.4
6,152,854 - +0.5
6,152,854 - +2.3
6,152,892 + -0.4
6,152,892 + -0.3
6,152,893 - -0.6
6,152,893 - +0.0
6,152,893 - -0.3
6,152,928 + +1.0
6,152,928 + -0.2
6,152,928 + +1.7
6,152,928 + +0.8
6,152,928 + -1.3
6,152,928 + -0.3
6,152,928 + +0.0
6,152,928 + +0.5
6,152,928 + -1.0
6,152,929 - +1.3
6,152,929 - +1.1
6,152,929 - -0.0
6,152,929 - -2.8
6,152,929 - -0.5
6,152,929 - +0.2
6,152,970 - +0.0
6,152,984 + +0.0
6,152,984 + +0.2
6,152,984 + -0.2
6,152,985 - -0.5
6,153,001 + -0.5
6,153,001 + -0.8
6,153,001 + +0.1
6,153,112 + QEN71_RS27605 0.13 -2.0
6,153,113 - QEN71_RS27605 0.13 +0.9
6,153,113 - QEN71_RS27605 0.13 -0.6
6,153,113 - QEN71_RS27605 0.13 +1.6
6,153,113 - QEN71_RS27605 0.13 +1.4
6,153,142 + QEN71_RS27605 0.15 +1.6
6,153,142 + QEN71_RS27605 0.15 -0.5
6,153,142 + QEN71_RS27605 0.15 +0.2
6,153,142 + QEN71_RS27605 0.15 +0.0
6,153,143 - QEN71_RS27605 0.15 +0.2
6,153,143 - QEN71_RS27605 0.15 +0.0
6,153,143 - QEN71_RS27605 0.15 -0.5
6,153,143 - QEN71_RS27605 0.15 +0.6
6,153,175 + QEN71_RS27605 0.18 +0.4
6,153,211 + QEN71_RS27605 0.20 +0.4
6,153,211 + QEN71_RS27605 0.20 -0.2
6,153,211 + QEN71_RS27605 0.20 -0.6
6,153,212 - QEN71_RS27605 0.20 +0.7
6,153,212 - QEN71_RS27605 0.20 +1.6
6,153,212 - QEN71_RS27605 0.20 +0.2
6,153,212 - QEN71_RS27605 0.20 +0.0
6,153,212 - QEN71_RS27605 0.20 +0.6
6,153,212 - QEN71_RS27605 0.20 +0.3
6,153,331 + QEN71_RS27605 0.29 +0.7
6,153,331 + QEN71_RS27605 0.29 -0.6
6,153,331 + QEN71_RS27605 0.29 -0.6
6,153,331 + QEN71_RS27605 0.29 +0.2
6,153,331 + QEN71_RS27605 0.29 +0.8
6,153,331 + QEN71_RS27605 0.29 +0.8
6,153,331 + QEN71_RS27605 0.29 -1.0
6,153,331 + QEN71_RS27605 0.29 -0.3
6,153,331 + QEN71_RS27605 0.29 +0.1
6,153,331 + QEN71_RS27605 0.29 -0.2
6,153,331 + QEN71_RS27605 0.29 +0.9
6,153,332 - QEN71_RS27605 0.29 -0.5
6,153,332 - QEN71_RS27605 0.29 -0.1
6,153,332 - QEN71_RS27605 0.29 -0.5
6,153,332 - QEN71_RS27605 0.29 -0.3
6,153,332 - QEN71_RS27605 0.29 -0.6
6,153,332 - QEN71_RS27605 0.29 -0.6
6,153,334 + QEN71_RS27605 0.30 -1.4
6,153,334 + QEN71_RS27605 0.30 +0.4
6,153,334 + QEN71_RS27605 0.30 -1.7
6,153,334 + QEN71_RS27605 0.30 +0.2
6,153,334 + QEN71_RS27605 0.30 -2.4
6,153,334 + QEN71_RS27605 0.30 -0.1
6,153,334 + QEN71_RS27605 0.30 -0.2
6,153,335 - QEN71_RS27605 0.30 +2.1
6,153,335 - QEN71_RS27605 0.30 +0.2
6,153,335 - QEN71_RS27605 0.30 -0.7
6,153,335 - QEN71_RS27605 0.30 -3.2
6,153,398 - QEN71_RS27605 0.34 -0.6
6,153,398 - QEN71_RS27605 0.34 +0.2
6,153,400 + QEN71_RS27605 0.35 +0.2
6,153,400 + QEN71_RS27605 0.35 +0.7
6,153,400 + QEN71_RS27605 0.35 +0.2
6,153,400 + QEN71_RS27605 0.35 +0.0
6,153,400 + QEN71_RS27605 0.35 -1.0
6,153,400 + QEN71_RS27605 0.35 -0.4
6,153,400 + QEN71_RS27605 0.35 +0.6
6,153,400 + QEN71_RS27605 0.35 +0.7
6,153,400 + QEN71_RS27605 0.35 -0.0
6,153,400 + QEN71_RS27605 0.35 +0.7
6,153,401 - QEN71_RS27605 0.35 +0.1
6,153,401 - QEN71_RS27605 0.35 -0.3
6,153,401 - QEN71_RS27605 0.35 +0.3
6,153,401 - QEN71_RS27605 0.35 -1.0
6,153,401 - QEN71_RS27605 0.35 +0.2
6,153,401 - QEN71_RS27605 0.35 +0.1
6,153,401 - QEN71_RS27605 0.35 -0.2
6,153,515 - QEN71_RS27605 0.43 -0.4
6,153,553 + QEN71_RS27605 0.46 -1.9
6,153,553 + QEN71_RS27605 0.46 -1.4
6,153,553 + QEN71_RS27605 0.46 -1.3
6,153,554 - QEN71_RS27605 0.46 -0.2
6,153,554 - QEN71_RS27605 0.46 +0.5

Or see this region's nucleotide sequence