Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26950

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS26945 and QEN71_RS26950 are separated by 51 nucleotidesQEN71_RS26950 and QEN71_RS26955 are separated by 42 nucleotides QEN71_RS26945: QEN71_RS26945 - DNA polymerase III subunit delta, at 6,009,701 to 6,010,825 _RS26945 QEN71_RS26950: QEN71_RS26950 - LPS assembly lipoprotein LptE, at 6,010,877 to 6,011,428 _RS26950 QEN71_RS26955: QEN71_RS26955 - leucine--tRNA ligase, at 6,011,471 to 6,014,065 _RS26955 Position (kb) 6010 6011 6012Strain fitness (log2 ratio) -2 -1 0 1at 6010.836 kb on - strandat 6010.836 kb on - strandat 6010.836 kb on - strandat 6011.059 kb on - strand, within QEN71_RS26950at 6011.059 kb on - strand, within QEN71_RS26950at 6011.059 kb on - strand, within QEN71_RS26950at 6011.059 kb on - strand, within QEN71_RS26950at 6011.131 kb on - strand, within QEN71_RS26950at 6011.282 kb on - strand, within QEN71_RS26950at 6011.282 kb on - strand, within QEN71_RS26950at 6011.282 kb on - strand, within QEN71_RS26950at 6011.344 kb on - strand, within QEN71_RS26950at 6011.344 kb on - strand, within QEN71_RS26950at 6011.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,010,836 - -1.1
6,010,836 - -0.4
6,010,836 - -1.6
6,011,059 - QEN71_RS26950 0.33 +0.0
6,011,059 - QEN71_RS26950 0.33 +0.0
6,011,059 - QEN71_RS26950 0.33 -1.6
6,011,059 - QEN71_RS26950 0.33 -0.8
6,011,131 - QEN71_RS26950 0.46 -1.8
6,011,282 - QEN71_RS26950 0.73 +0.0
6,011,282 - QEN71_RS26950 0.73 -0.3
6,011,282 - QEN71_RS26950 0.73 +0.0
6,011,344 - QEN71_RS26950 0.85 -0.3
6,011,344 - QEN71_RS26950 0.85 -0.3
6,011,450 - -0.6

Or see this region's nucleotide sequence