Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25195 and QEN71_RS25200 are separated by 93 nucleotides QEN71_RS25200 and QEN71_RS25205 are separated by 46 nucleotides QEN71_RS25205 and QEN71_RS25210 are separated by 136 nucleotides
QEN71_RS25195: QEN71_RS25195 - DUF2486 family protein, at 5,606,516 to 5,607,271
_RS25195
QEN71_RS25200: QEN71_RS25200 - DNA polymerase III subunit chi, at 5,607,365 to 5,607,781
_RS25200
QEN71_RS25205: QEN71_RS25205 - leucyl aminopeptidase, at 5,607,828 to 5,609,339
_RS25205
QEN71_RS25210: QEN71_RS25210 - LPS export ABC transporter permease LptF, at 5,609,476 to 5,610,588
_RS25210
Position (kb) 5607
5608
5609
5610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5606.973 kb on + strand, within QEN71_RS25195 at 5606.974 kb on - strand, within QEN71_RS25195 at 5606.974 kb on - strand, within QEN71_RS25195 at 5606.974 kb on - strand, within QEN71_RS25195 at 5607.288 kb on + strand at 5607.314 kb on + strand at 5607.314 kb on + strand at 5607.315 kb on - strand at 5607.381 kb on + strand at 5607.381 kb on + strand at 5607.381 kb on + strand at 5607.381 kb on + strand at 5607.381 kb on + strand at 5607.381 kb on + strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.382 kb on - strand at 5607.527 kb on + strand, within QEN71_RS25200 at 5607.823 kb on - strand at 5607.823 kb on - strand at 5607.823 kb on - strand at 5607.823 kb on - strand at 5607.823 kb on - strand at 5607.823 kb on - strand at 5607.823 kb on - strand at 5607.823 kb on - strand at 5607.824 kb on + strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.825 kb on - strand at 5607.947 kb on - strand at 5608.052 kb on - strand, within QEN71_RS25205 at 5608.052 kb on - strand, within QEN71_RS25205 at 5608.235 kb on - strand, within QEN71_RS25205 at 5608.454 kb on - strand, within QEN71_RS25205 at 5608.454 kb on - strand, within QEN71_RS25205 at 5608.454 kb on - strand, within QEN71_RS25205 at 5608.715 kb on - strand, within QEN71_RS25205 at 5608.715 kb on - strand, within QEN71_RS25205 at 5608.904 kb on - strand, within QEN71_RS25205 at 5608.904 kb on - strand, within QEN71_RS25205 at 5608.904 kb on - strand, within QEN71_RS25205 at 5608.986 kb on - strand, within QEN71_RS25205 at 5609.051 kb on - strand, within QEN71_RS25205 at 5609.325 kb on + strand at 5609.369 kb on + strand at 5609.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 5,606,973 + QEN71_RS25195 0.60 -3.1 5,606,974 - QEN71_RS25195 0.61 -0.9 5,606,974 - QEN71_RS25195 0.61 -0.1 5,606,974 - QEN71_RS25195 0.61 +0.7 5,607,288 + -0.7 5,607,314 + -1.6 5,607,314 + +0.1 5,607,315 - -0.4 5,607,381 + +2.0 5,607,381 + -0.0 5,607,381 + -1.7 5,607,381 + -1.5 5,607,381 + -0.8 5,607,381 + -0.7 5,607,382 - +0.4 5,607,382 - +0.4 5,607,382 - +0.3 5,607,382 - -1.0 5,607,382 - +0.7 5,607,382 - -0.4 5,607,382 - +0.6 5,607,382 - -2.2 5,607,382 - +0.1 5,607,382 - +1.1 5,607,382 - +0.2 5,607,382 - -0.6 5,607,527 + QEN71_RS25200 0.39 +2.1 5,607,823 - +0.8 5,607,823 - +0.1 5,607,823 - +1.1 5,607,823 - -1.4 5,607,823 - -0.1 5,607,823 - +0.3 5,607,823 - -0.1 5,607,823 - -0.3 5,607,824 + -1.4 5,607,825 - +1.6 5,607,825 - -0.2 5,607,825 - -0.4 5,607,825 - -0.7 5,607,825 - -0.8 5,607,825 - -0.8 5,607,825 - -0.3 5,607,825 - -1.8 5,607,825 - -0.5 5,607,825 - -0.2 5,607,947 - -1.7 5,608,052 - QEN71_RS25205 0.15 -0.9 5,608,052 - QEN71_RS25205 0.15 +0.1 5,608,235 - QEN71_RS25205 0.27 -2.3 5,608,454 - QEN71_RS25205 0.41 -2.5 5,608,454 - QEN71_RS25205 0.41 -3.7 5,608,454 - QEN71_RS25205 0.41 -0.7 5,608,715 - QEN71_RS25205 0.59 -0.5 5,608,715 - QEN71_RS25205 0.59 -3.0 5,608,904 - QEN71_RS25205 0.71 -4.0 5,608,904 - QEN71_RS25205 0.71 -2.4 5,608,904 - QEN71_RS25205 0.71 +0.1 5,608,986 - QEN71_RS25205 0.77 +1.1 5,609,051 - QEN71_RS25205 0.81 -0.9 5,609,325 + -0.5 5,609,369 + -0.7 5,609,387 + -0.7
Or see this region's nucleotide sequence