Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS24230 and QEN71_RS24235 overlap by 4 nucleotides QEN71_RS24235 and QEN71_RS24240 are separated by 17 nucleotides QEN71_RS24240 and QEN71_RS24245 are separated by 84 nucleotides
QEN71_RS24230: QEN71_RS24230 - RNA polymerase sigma factor, at 5,391,497 to 5,392,060
_RS24230
QEN71_RS24235: QEN71_RS24235 - DUF3619 family protein, at 5,392,057 to 5,392,488
_RS24235
QEN71_RS24240: QEN71_RS24240 - DUF3106 domain-containing protein, at 5,392,506 to 5,393,264
_RS24240
QEN71_RS24245: QEN71_RS24245 - RDD family protein, at 5,393,349 to 5,393,855
_RS24245
Position (kb) 5392
5393
5394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5391.566 kb on + strand, within QEN71_RS24230 at 5391.566 kb on + strand, within QEN71_RS24230 at 5391.566 kb on + strand, within QEN71_RS24230 at 5391.567 kb on - strand, within QEN71_RS24230 at 5391.567 kb on - strand, within QEN71_RS24230 at 5391.635 kb on + strand, within QEN71_RS24230 at 5391.636 kb on - strand, within QEN71_RS24230 at 5391.679 kb on + strand, within QEN71_RS24230 at 5391.679 kb on + strand, within QEN71_RS24230 at 5391.679 kb on + strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.680 kb on - strand, within QEN71_RS24230 at 5391.704 kb on + strand, within QEN71_RS24230 at 5391.704 kb on + strand, within QEN71_RS24230 at 5391.704 kb on + strand, within QEN71_RS24230 at 5391.705 kb on - strand, within QEN71_RS24230 at 5391.705 kb on - strand, within QEN71_RS24230 at 5391.705 kb on - strand, within QEN71_RS24230 at 5391.705 kb on - strand, within QEN71_RS24230 at 5391.705 kb on - strand, within QEN71_RS24230 at 5391.929 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.940 kb on + strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5391.941 kb on - strand, within QEN71_RS24230 at 5392.056 kb on + strand at 5392.056 kb on + strand at 5392.056 kb on + strand at 5392.056 kb on + strand at 5392.056 kb on + strand at 5392.057 kb on - strand at 5392.135 kb on - strand, within QEN71_RS24235 at 5392.135 kb on - strand, within QEN71_RS24235 at 5392.135 kb on - strand, within QEN71_RS24235 at 5392.146 kb on + strand, within QEN71_RS24235 at 5392.441 kb on + strand, within QEN71_RS24235 at 5392.442 kb on - strand, within QEN71_RS24235 at 5392.442 kb on - strand, within QEN71_RS24235 at 5392.466 kb on - strand at 5392.466 kb on - strand at 5392.466 kb on - strand at 5392.512 kb on + strand at 5392.512 kb on + strand at 5392.512 kb on + strand at 5392.512 kb on + strand at 5392.512 kb on + strand at 5392.513 kb on - strand at 5392.513 kb on - strand at 5392.513 kb on - strand at 5392.578 kb on + strand at 5392.578 kb on + strand at 5392.578 kb on + strand at 5392.578 kb on + strand at 5392.579 kb on - strand at 5392.579 kb on - strand at 5392.911 kb on + strand, within QEN71_RS24240 at 5392.911 kb on + strand, within QEN71_RS24240 at 5392.911 kb on + strand, within QEN71_RS24240 at 5392.911 kb on + strand, within QEN71_RS24240 at 5392.911 kb on + strand, within QEN71_RS24240 at 5392.911 kb on + strand, within QEN71_RS24240 at 5392.911 kb on + strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.912 kb on - strand, within QEN71_RS24240 at 5392.965 kb on + strand, within QEN71_RS24240 at 5393.262 kb on + strand at 5393.262 kb on + strand at 5393.262 kb on + strand at 5393.262 kb on + strand at 5393.262 kb on + strand at 5393.262 kb on + strand at 5393.262 kb on + strand at 5393.371 kb on + strand at 5393.372 kb on - strand at 5393.418 kb on + strand, within QEN71_RS24245 at 5393.418 kb on + strand, within QEN71_RS24245 at 5393.418 kb on + strand, within QEN71_RS24245 at 5393.419 kb on - strand, within QEN71_RS24245 at 5393.419 kb on - strand, within QEN71_RS24245 at 5393.419 kb on - strand, within QEN71_RS24245 at 5393.419 kb on - strand, within QEN71_RS24245 at 5393.460 kb on + strand, within QEN71_RS24245 at 5393.461 kb on - strand, within QEN71_RS24245 at 5393.461 kb on - strand, within QEN71_RS24245 at 5393.547 kb on + strand, within QEN71_RS24245 at 5393.547 kb on + strand, within QEN71_RS24245 at 5393.547 kb on + strand, within QEN71_RS24245 at 5393.547 kb on + strand, within QEN71_RS24245 at 5393.547 kb on + strand, within QEN71_RS24245 at 5393.548 kb on - strand, within QEN71_RS24245 at 5393.548 kb on - strand, within QEN71_RS24245 at 5393.647 kb on + strand, within QEN71_RS24245 at 5393.648 kb on - strand, within QEN71_RS24245 at 5393.664 kb on + strand, within QEN71_RS24245 at 5393.664 kb on + strand, within QEN71_RS24245 at 5393.664 kb on + strand, within QEN71_RS24245 at 5393.665 kb on - strand, within QEN71_RS24245 at 5393.665 kb on - strand, within QEN71_RS24245 at 5393.713 kb on + strand, within QEN71_RS24245 at 5393.713 kb on + strand, within QEN71_RS24245 at 5393.713 kb on + strand, within QEN71_RS24245 at 5393.713 kb on + strand, within QEN71_RS24245 at 5393.714 kb on - strand, within QEN71_RS24245 at 5393.753 kb on + strand, within QEN71_RS24245 at 5393.753 kb on + strand, within QEN71_RS24245 at 5393.753 kb on + strand, within QEN71_RS24245 at 5393.754 kb on - strand, within QEN71_RS24245 at 5393.754 kb on - strand, within QEN71_RS24245 at 5393.769 kb on + strand, within QEN71_RS24245 at 5393.769 kb on + strand, within QEN71_RS24245 at 5393.769 kb on + strand, within QEN71_RS24245 at 5393.770 kb on - strand, within QEN71_RS24245 at 5393.770 kb on - strand, within QEN71_RS24245 at 5393.770 kb on - strand, within QEN71_RS24245 at 5393.841 kb on - strand at 5393.881 kb on - strand at 5393.881 kb on - strand at 5393.881 kb on - strand at 5393.881 kb on - strand at 5394.189 kb on - strand at 5394.232 kb on - strand at 5394.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 5,391,566 + QEN71_RS24230 0.12 -0.8 5,391,566 + QEN71_RS24230 0.12 -0.5 5,391,566 + QEN71_RS24230 0.12 +1.3 5,391,567 - QEN71_RS24230 0.12 -1.3 5,391,567 - QEN71_RS24230 0.12 -2.3 5,391,635 + QEN71_RS24230 0.24 -0.1 5,391,636 - QEN71_RS24230 0.25 +0.6 5,391,679 + QEN71_RS24230 0.32 -2.0 5,391,679 + QEN71_RS24230 0.32 -2.6 5,391,679 + QEN71_RS24230 0.32 +0.2 5,391,680 - QEN71_RS24230 0.32 +1.5 5,391,680 - QEN71_RS24230 0.32 -0.9 5,391,680 - QEN71_RS24230 0.32 +0.3 5,391,680 - QEN71_RS24230 0.32 -1.1 5,391,680 - QEN71_RS24230 0.32 -0.3 5,391,680 - QEN71_RS24230 0.32 -0.8 5,391,680 - QEN71_RS24230 0.32 -0.5 5,391,680 - QEN71_RS24230 0.32 -1.2 5,391,680 - QEN71_RS24230 0.32 +0.0 5,391,704 + QEN71_RS24230 0.37 +0.5 5,391,704 + QEN71_RS24230 0.37 -0.4 5,391,704 + QEN71_RS24230 0.37 -0.1 5,391,705 - QEN71_RS24230 0.37 -0.2 5,391,705 - QEN71_RS24230 0.37 -0.9 5,391,705 - QEN71_RS24230 0.37 -0.7 5,391,705 - QEN71_RS24230 0.37 -2.9 5,391,705 - QEN71_RS24230 0.37 +0.8 5,391,929 + QEN71_RS24230 0.77 -0.2 5,391,940 + QEN71_RS24230 0.79 -0.7 5,391,940 + QEN71_RS24230 0.79 -1.7 5,391,940 + QEN71_RS24230 0.79 -1.2 5,391,940 + QEN71_RS24230 0.79 +0.1 5,391,940 + QEN71_RS24230 0.79 +0.8 5,391,940 + QEN71_RS24230 0.79 +0.5 5,391,940 + QEN71_RS24230 0.79 -1.1 5,391,940 + QEN71_RS24230 0.79 +0.0 5,391,940 + QEN71_RS24230 0.79 -0.9 5,391,940 + QEN71_RS24230 0.79 +1.3 5,391,940 + QEN71_RS24230 0.79 -0.9 5,391,940 + QEN71_RS24230 0.79 -1.3 5,391,940 + QEN71_RS24230 0.79 -0.9 5,391,940 + QEN71_RS24230 0.79 +0.2 5,391,940 + QEN71_RS24230 0.79 -0.7 5,391,941 - QEN71_RS24230 0.79 +0.4 5,391,941 - QEN71_RS24230 0.79 +0.2 5,391,941 - QEN71_RS24230 0.79 -0.9 5,391,941 - QEN71_RS24230 0.79 +0.3 5,391,941 - QEN71_RS24230 0.79 -0.9 5,391,941 - QEN71_RS24230 0.79 -0.1 5,391,941 - QEN71_RS24230 0.79 -0.8 5,391,941 - QEN71_RS24230 0.79 -1.6 5,391,941 - QEN71_RS24230 0.79 -0.7 5,391,941 - QEN71_RS24230 0.79 -1.5 5,391,941 - QEN71_RS24230 0.79 -3.4 5,391,941 - QEN71_RS24230 0.79 -0.2 5,391,941 - QEN71_RS24230 0.79 -1.3 5,391,941 - QEN71_RS24230 0.79 +0.1 5,391,941 - QEN71_RS24230 0.79 +0.1 5,391,941 - QEN71_RS24230 0.79 +0.4 5,391,941 - QEN71_RS24230 0.79 -2.1 5,391,941 - QEN71_RS24230 0.79 -1.8 5,391,941 - QEN71_RS24230 0.79 -0.3 5,392,056 + -1.4 5,392,056 + +0.4 5,392,056 + -0.6 5,392,056 + -0.8 5,392,056 + +0.1 5,392,057 - +0.3 5,392,135 - QEN71_RS24235 0.18 -1.8 5,392,135 - QEN71_RS24235 0.18 -1.8 5,392,135 - QEN71_RS24235 0.18 -1.8 5,392,146 + QEN71_RS24235 0.21 -4.1 5,392,441 + QEN71_RS24235 0.89 +0.1 5,392,442 - QEN71_RS24235 0.89 +1.1 5,392,442 - QEN71_RS24235 0.89 -2.1 5,392,466 - -1.3 5,392,466 - -2.2 5,392,466 - -0.5 5,392,512 + -2.8 5,392,512 + -1.9 5,392,512 + -1.7 5,392,512 + -1.9 5,392,512 + -1.1 5,392,513 - -3.6 5,392,513 - -1.3 5,392,513 - -1.9 5,392,578 + -2.0 5,392,578 + -2.7 5,392,578 + -1.3 5,392,578 + -2.8 5,392,579 - +0.1 5,392,579 - -0.9 5,392,911 + QEN71_RS24240 0.53 -4.2 5,392,911 + QEN71_RS24240 0.53 -1.7 5,392,911 + QEN71_RS24240 0.53 -2.7 5,392,911 + QEN71_RS24240 0.53 -1.6 5,392,911 + QEN71_RS24240 0.53 -2.9 5,392,911 + QEN71_RS24240 0.53 -1.7 5,392,911 + QEN71_RS24240 0.53 -3.9 5,392,912 - QEN71_RS24240 0.53 -0.7 5,392,912 - QEN71_RS24240 0.53 -0.6 5,392,912 - QEN71_RS24240 0.53 -1.5 5,392,912 - QEN71_RS24240 0.53 -2.0 5,392,912 - QEN71_RS24240 0.53 -2.9 5,392,912 - QEN71_RS24240 0.53 -2.4 5,392,912 - QEN71_RS24240 0.53 -2.0 5,392,912 - QEN71_RS24240 0.53 -1.1 5,392,965 + QEN71_RS24240 0.60 -1.6 5,393,262 + -0.2 5,393,262 + -0.0 5,393,262 + -2.0 5,393,262 + +0.7 5,393,262 + +0.8 5,393,262 + +1.0 5,393,262 + -1.3 5,393,371 + +0.0 5,393,372 - -0.5 5,393,418 + QEN71_RS24245 0.14 -0.2 5,393,418 + QEN71_RS24245 0.14 -1.6 5,393,418 + QEN71_RS24245 0.14 -0.6 5,393,419 - QEN71_RS24245 0.14 -0.2 5,393,419 - QEN71_RS24245 0.14 -0.2 5,393,419 - QEN71_RS24245 0.14 -1.9 5,393,419 - QEN71_RS24245 0.14 +0.1 5,393,460 + QEN71_RS24245 0.22 -1.0 5,393,461 - QEN71_RS24245 0.22 -0.7 5,393,461 - QEN71_RS24245 0.22 -2.1 5,393,547 + QEN71_RS24245 0.39 -0.2 5,393,547 + QEN71_RS24245 0.39 +0.1 5,393,547 + QEN71_RS24245 0.39 -0.2 5,393,547 + QEN71_RS24245 0.39 +0.1 5,393,547 + QEN71_RS24245 0.39 -0.5 5,393,548 - QEN71_RS24245 0.39 -0.5 5,393,548 - QEN71_RS24245 0.39 -0.6 5,393,647 + QEN71_RS24245 0.59 -1.1 5,393,648 - QEN71_RS24245 0.59 -0.5 5,393,664 + QEN71_RS24245 0.62 +2.1 5,393,664 + QEN71_RS24245 0.62 -0.5 5,393,664 + QEN71_RS24245 0.62 -0.4 5,393,665 - QEN71_RS24245 0.62 -0.6 5,393,665 - QEN71_RS24245 0.62 -2.1 5,393,713 + QEN71_RS24245 0.72 -0.9 5,393,713 + QEN71_RS24245 0.72 -1.1 5,393,713 + QEN71_RS24245 0.72 -0.7 5,393,713 + QEN71_RS24245 0.72 -1.5 5,393,714 - QEN71_RS24245 0.72 -1.1 5,393,753 + QEN71_RS24245 0.80 +0.7 5,393,753 + QEN71_RS24245 0.80 -0.5 5,393,753 + QEN71_RS24245 0.80 +0.3 5,393,754 - QEN71_RS24245 0.80 -0.3 5,393,754 - QEN71_RS24245 0.80 -0.3 5,393,769 + QEN71_RS24245 0.83 -0.6 5,393,769 + QEN71_RS24245 0.83 +1.1 5,393,769 + QEN71_RS24245 0.83 -0.6 5,393,770 - QEN71_RS24245 0.83 -1.2 5,393,770 - QEN71_RS24245 0.83 -0.0 5,393,770 - QEN71_RS24245 0.83 +0.5 5,393,841 - -0.8 5,393,881 - -0.1 5,393,881 - -0.4 5,393,881 - +3.1 5,393,881 - -0.0 5,394,189 - -0.2 5,394,232 - +0.3 5,394,232 - +1.4
Or see this region's nucleotide sequence