Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS24235

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS24225 and QEN71_RS24230 are separated by 408 nucleotidesQEN71_RS24230 and QEN71_RS24235 overlap by 4 nucleotidesQEN71_RS24235 and QEN71_RS24240 are separated by 17 nucleotidesQEN71_RS24240 and QEN71_RS24245 are separated by 84 nucleotides QEN71_RS24225: QEN71_RS24225 - acetolactate synthase 3 catalytic subunit, at 5,389,325 to 5,391,088 _RS24225 QEN71_RS24230: QEN71_RS24230 - RNA polymerase sigma factor, at 5,391,497 to 5,392,060 _RS24230 QEN71_RS24235: QEN71_RS24235 - DUF3619 family protein, at 5,392,057 to 5,392,488 _RS24235 QEN71_RS24240: QEN71_RS24240 - DUF3106 domain-containing protein, at 5,392,506 to 5,393,264 _RS24240 QEN71_RS24245: QEN71_RS24245 - RDD family protein, at 5,393,349 to 5,393,855 _RS24245 Position (kb) 5392 5393Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.082 kb on + strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.083 kb on - strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.219 kb on + strandat 5391.220 kb on - strandat 5391.220 kb on - strandat 5391.220 kb on - strandat 5391.220 kb on - strandat 5391.220 kb on - strandat 5391.220 kb on - strandat 5391.220 kb on - strandat 5391.220 kb on - strandat 5391.233 kb on + strandat 5391.233 kb on + strandat 5391.240 kb on + strandat 5391.240 kb on + strandat 5391.241 kb on - strandat 5391.241 kb on - strandat 5391.241 kb on - strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.244 kb on + strandat 5391.245 kb on - strandat 5391.245 kb on - strandat 5391.245 kb on - strandat 5391.245 kb on - strandat 5391.245 kb on - strandat 5391.245 kb on - strandat 5391.245 kb on - strandat 5391.245 kb on - strandat 5391.249 kb on + strandat 5391.250 kb on - strandat 5391.250 kb on - strandat 5391.250 kb on - strandat 5391.250 kb on - strandat 5391.250 kb on - strandat 5391.270 kb on + strandat 5391.271 kb on - strandat 5391.361 kb on + strandat 5391.361 kb on + strandat 5391.361 kb on + strandat 5391.362 kb on - strandat 5391.362 kb on - strandat 5391.362 kb on - strandat 5391.362 kb on - strandat 5391.362 kb on - strandat 5391.369 kb on + strandat 5391.369 kb on + strandat 5391.369 kb on + strandat 5391.369 kb on + strandat 5391.369 kb on + strandat 5391.370 kb on - strandat 5391.370 kb on - strandat 5391.370 kb on - strandat 5391.370 kb on - strandat 5391.370 kb on - strandat 5391.428 kb on + strandat 5391.429 kb on - strandat 5391.429 kb on - strandat 5391.429 kb on - strandat 5391.444 kb on + strandat 5391.444 kb on + strandat 5391.566 kb on + strand, within QEN71_RS24230at 5391.566 kb on + strand, within QEN71_RS24230at 5391.566 kb on + strand, within QEN71_RS24230at 5391.567 kb on - strand, within QEN71_RS24230at 5391.567 kb on - strand, within QEN71_RS24230at 5391.635 kb on + strand, within QEN71_RS24230at 5391.636 kb on - strand, within QEN71_RS24230at 5391.679 kb on + strand, within QEN71_RS24230at 5391.679 kb on + strand, within QEN71_RS24230at 5391.679 kb on + strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.680 kb on - strand, within QEN71_RS24230at 5391.704 kb on + strand, within QEN71_RS24230at 5391.704 kb on + strand, within QEN71_RS24230at 5391.704 kb on + strand, within QEN71_RS24230at 5391.705 kb on - strand, within QEN71_RS24230at 5391.705 kb on - strand, within QEN71_RS24230at 5391.705 kb on - strand, within QEN71_RS24230at 5391.705 kb on - strand, within QEN71_RS24230at 5391.705 kb on - strand, within QEN71_RS24230at 5391.929 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.940 kb on + strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5391.941 kb on - strand, within QEN71_RS24230at 5392.056 kb on + strandat 5392.056 kb on + strandat 5392.056 kb on + strandat 5392.056 kb on + strandat 5392.056 kb on + strandat 5392.057 kb on - strandat 5392.135 kb on - strand, within QEN71_RS24235at 5392.135 kb on - strand, within QEN71_RS24235at 5392.135 kb on - strand, within QEN71_RS24235at 5392.146 kb on + strand, within QEN71_RS24235at 5392.441 kb on + strand, within QEN71_RS24235at 5392.442 kb on - strand, within QEN71_RS24235at 5392.442 kb on - strand, within QEN71_RS24235at 5392.466 kb on - strandat 5392.466 kb on - strandat 5392.466 kb on - strandat 5392.512 kb on + strandat 5392.512 kb on + strandat 5392.512 kb on + strandat 5392.512 kb on + strandat 5392.512 kb on + strandat 5392.513 kb on - strandat 5392.513 kb on - strandat 5392.513 kb on - strandat 5392.578 kb on + strandat 5392.578 kb on + strandat 5392.578 kb on + strandat 5392.578 kb on + strandat 5392.579 kb on - strandat 5392.579 kb on - strandat 5392.911 kb on + strand, within QEN71_RS24240at 5392.911 kb on + strand, within QEN71_RS24240at 5392.911 kb on + strand, within QEN71_RS24240at 5392.911 kb on + strand, within QEN71_RS24240at 5392.911 kb on + strand, within QEN71_RS24240at 5392.911 kb on + strand, within QEN71_RS24240at 5392.911 kb on + strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.912 kb on - strand, within QEN71_RS24240at 5392.965 kb on + strand, within QEN71_RS24240at 5393.262 kb on + strandat 5393.262 kb on + strandat 5393.262 kb on + strandat 5393.262 kb on + strandat 5393.262 kb on + strandat 5393.262 kb on + strandat 5393.262 kb on + strandat 5393.371 kb on + strandat 5393.372 kb on - strandat 5393.418 kb on + strand, within QEN71_RS24245at 5393.418 kb on + strand, within QEN71_RS24245at 5393.418 kb on + strand, within QEN71_RS24245at 5393.419 kb on - strand, within QEN71_RS24245at 5393.419 kb on - strand, within QEN71_RS24245at 5393.419 kb on - strand, within QEN71_RS24245at 5393.419 kb on - strand, within QEN71_RS24245at 5393.460 kb on + strand, within QEN71_RS24245at 5393.461 kb on - strand, within QEN71_RS24245at 5393.461 kb on - strand, within QEN71_RS24245

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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5,391,082 + -0.1
5,391,082 + +0.6
5,391,082 + -0.7
5,391,082 + +0.1
5,391,082 + -0.7
5,391,082 + -1.3
5,391,082 + +0.8
5,391,082 + -1.2
5,391,082 + +0.1
5,391,083 - -0.8
5,391,083 - +0.5
5,391,083 - -0.1
5,391,083 - +0.6
5,391,083 - -0.2
5,391,083 - +0.4
5,391,083 - -0.9
5,391,083 - -1.1
5,391,083 - -0.9
5,391,083 - +0.6
5,391,219 + -0.3
5,391,219 + +1.5
5,391,219 + +1.8
5,391,219 + -1.2
5,391,219 + +0.7
5,391,219 + -3.0
5,391,219 + -0.2
5,391,219 + +1.8
5,391,219 + +0.9
5,391,220 - +0.2
5,391,220 - +0.0
5,391,220 - +0.4
5,391,220 - -0.7
5,391,220 - -0.8
5,391,220 - -0.5
5,391,220 - +0.2
5,391,220 - -0.8
5,391,233 + -2.0
5,391,233 + -1.0
5,391,240 + -0.3
5,391,240 + -0.2
5,391,241 - -0.7
5,391,241 - +1.5
5,391,241 - -1.4
5,391,244 + -0.8
5,391,244 + -0.8
5,391,244 + +1.0
5,391,244 + -0.5
5,391,244 + +0.6
5,391,244 + -1.0
5,391,244 + +0.8
5,391,244 + -0.2
5,391,244 + +0.3
5,391,244 + -0.5
5,391,245 - +1.3
5,391,245 - -1.2
5,391,245 - -1.6
5,391,245 - -1.2
5,391,245 - -0.1
5,391,245 - +0.2
5,391,245 - -1.2
5,391,245 - -1.6
5,391,249 + -2.3
5,391,250 - -1.9
5,391,250 - +0.8
5,391,250 - +0.3
5,391,250 - +1.1
5,391,250 - +0.1
5,391,270 + +0.5
5,391,271 - -0.0
5,391,361 + +0.3
5,391,361 + -0.3
5,391,361 + -0.4
5,391,362 - -0.2
5,391,362 - +1.0
5,391,362 - +0.3
5,391,362 - +0.6
5,391,362 - +0.7
5,391,369 + -0.6
5,391,369 + +0.3
5,391,369 + +0.1
5,391,369 + -0.9
5,391,369 + -0.6
5,391,370 - -0.1
5,391,370 - -0.6
5,391,370 - -0.2
5,391,370 - +0.4
5,391,370 - +0.1
5,391,428 + -1.5
5,391,429 - +0.1
5,391,429 - +0.3
5,391,429 - -1.5
5,391,444 + -0.4
5,391,444 + -1.6
5,391,566 + QEN71_RS24230 0.12 -0.8
5,391,566 + QEN71_RS24230 0.12 -0.5
5,391,566 + QEN71_RS24230 0.12 +1.3
5,391,567 - QEN71_RS24230 0.12 -1.3
5,391,567 - QEN71_RS24230 0.12 -2.3
5,391,635 + QEN71_RS24230 0.24 -0.1
5,391,636 - QEN71_RS24230 0.25 +0.6
5,391,679 + QEN71_RS24230 0.32 -2.0
5,391,679 + QEN71_RS24230 0.32 -2.6
5,391,679 + QEN71_RS24230 0.32 +0.2
5,391,680 - QEN71_RS24230 0.32 +1.5
5,391,680 - QEN71_RS24230 0.32 -0.9
5,391,680 - QEN71_RS24230 0.32 +0.3
5,391,680 - QEN71_RS24230 0.32 -1.1
5,391,680 - QEN71_RS24230 0.32 -0.3
5,391,680 - QEN71_RS24230 0.32 -0.8
5,391,680 - QEN71_RS24230 0.32 -0.5
5,391,680 - QEN71_RS24230 0.32 -1.2
5,391,680 - QEN71_RS24230 0.32 +0.0
5,391,704 + QEN71_RS24230 0.37 +0.5
5,391,704 + QEN71_RS24230 0.37 -0.4
5,391,704 + QEN71_RS24230 0.37 -0.1
5,391,705 - QEN71_RS24230 0.37 -0.2
5,391,705 - QEN71_RS24230 0.37 -0.9
5,391,705 - QEN71_RS24230 0.37 -0.7
5,391,705 - QEN71_RS24230 0.37 -2.9
5,391,705 - QEN71_RS24230 0.37 +0.8
5,391,929 + QEN71_RS24230 0.77 -0.2
5,391,940 + QEN71_RS24230 0.79 -0.7
5,391,940 + QEN71_RS24230 0.79 -1.7
5,391,940 + QEN71_RS24230 0.79 -1.2
5,391,940 + QEN71_RS24230 0.79 +0.1
5,391,940 + QEN71_RS24230 0.79 +0.8
5,391,940 + QEN71_RS24230 0.79 +0.5
5,391,940 + QEN71_RS24230 0.79 -1.1
5,391,940 + QEN71_RS24230 0.79 +0.0
5,391,940 + QEN71_RS24230 0.79 -0.9
5,391,940 + QEN71_RS24230 0.79 +1.3
5,391,940 + QEN71_RS24230 0.79 -0.9
5,391,940 + QEN71_RS24230 0.79 -1.3
5,391,940 + QEN71_RS24230 0.79 -0.9
5,391,940 + QEN71_RS24230 0.79 +0.2
5,391,940 + QEN71_RS24230 0.79 -0.7
5,391,941 - QEN71_RS24230 0.79 +0.4
5,391,941 - QEN71_RS24230 0.79 +0.2
5,391,941 - QEN71_RS24230 0.79 -0.9
5,391,941 - QEN71_RS24230 0.79 +0.3
5,391,941 - QEN71_RS24230 0.79 -0.9
5,391,941 - QEN71_RS24230 0.79 -0.1
5,391,941 - QEN71_RS24230 0.79 -0.8
5,391,941 - QEN71_RS24230 0.79 -1.6
5,391,941 - QEN71_RS24230 0.79 -0.7
5,391,941 - QEN71_RS24230 0.79 -1.5
5,391,941 - QEN71_RS24230 0.79 -3.4
5,391,941 - QEN71_RS24230 0.79 -0.2
5,391,941 - QEN71_RS24230 0.79 -1.3
5,391,941 - QEN71_RS24230 0.79 +0.1
5,391,941 - QEN71_RS24230 0.79 +0.1
5,391,941 - QEN71_RS24230 0.79 +0.4
5,391,941 - QEN71_RS24230 0.79 -2.1
5,391,941 - QEN71_RS24230 0.79 -1.8
5,391,941 - QEN71_RS24230 0.79 -0.3
5,392,056 + -1.4
5,392,056 + +0.4
5,392,056 + -0.6
5,392,056 + -0.8
5,392,056 + +0.1
5,392,057 - +0.3
5,392,135 - QEN71_RS24235 0.18 -1.8
5,392,135 - QEN71_RS24235 0.18 -1.8
5,392,135 - QEN71_RS24235 0.18 -1.8
5,392,146 + QEN71_RS24235 0.21 -4.1
5,392,441 + QEN71_RS24235 0.89 +0.1
5,392,442 - QEN71_RS24235 0.89 +1.1
5,392,442 - QEN71_RS24235 0.89 -2.1
5,392,466 - -1.3
5,392,466 - -2.2
5,392,466 - -0.5
5,392,512 + -2.8
5,392,512 + -1.9
5,392,512 + -1.7
5,392,512 + -1.9
5,392,512 + -1.1
5,392,513 - -3.6
5,392,513 - -1.3
5,392,513 - -1.9
5,392,578 + -2.0
5,392,578 + -2.7
5,392,578 + -1.3
5,392,578 + -2.8
5,392,579 - +0.1
5,392,579 - -0.9
5,392,911 + QEN71_RS24240 0.53 -4.2
5,392,911 + QEN71_RS24240 0.53 -1.7
5,392,911 + QEN71_RS24240 0.53 -2.7
5,392,911 + QEN71_RS24240 0.53 -1.6
5,392,911 + QEN71_RS24240 0.53 -2.9
5,392,911 + QEN71_RS24240 0.53 -1.7
5,392,911 + QEN71_RS24240 0.53 -3.9
5,392,912 - QEN71_RS24240 0.53 -0.7
5,392,912 - QEN71_RS24240 0.53 -0.6
5,392,912 - QEN71_RS24240 0.53 -1.5
5,392,912 - QEN71_RS24240 0.53 -2.0
5,392,912 - QEN71_RS24240 0.53 -2.9
5,392,912 - QEN71_RS24240 0.53 -2.4
5,392,912 - QEN71_RS24240 0.53 -2.0
5,392,912 - QEN71_RS24240 0.53 -1.1
5,392,965 + QEN71_RS24240 0.60 -1.6
5,393,262 + -0.2
5,393,262 + -0.0
5,393,262 + -2.0
5,393,262 + +0.7
5,393,262 + +0.8
5,393,262 + +1.0
5,393,262 + -1.3
5,393,371 + +0.0
5,393,372 - -0.5
5,393,418 + QEN71_RS24245 0.14 -0.2
5,393,418 + QEN71_RS24245 0.14 -1.6
5,393,418 + QEN71_RS24245 0.14 -0.6
5,393,419 - QEN71_RS24245 0.14 -0.2
5,393,419 - QEN71_RS24245 0.14 -0.2
5,393,419 - QEN71_RS24245 0.14 -1.9
5,393,419 - QEN71_RS24245 0.14 +0.1
5,393,460 + QEN71_RS24245 0.22 -1.0
5,393,461 - QEN71_RS24245 0.22 -0.7
5,393,461 - QEN71_RS24245 0.22 -2.1

Or see this region's nucleotide sequence