Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22510

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22495 and QEN71_RS22500 are separated by 2 nucleotidesQEN71_RS22500 and QEN71_RS22505 are separated by 76 nucleotidesQEN71_RS22505 and QEN71_RS22510 are separated by 201 nucleotidesQEN71_RS22510 and QEN71_RS22515 overlap by 11 nucleotidesQEN71_RS22515 and QEN71_RS22520 are separated by 156 nucleotides QEN71_RS22495: QEN71_RS22495 - 30S ribosomal protein S18, at 4,998,840 to 4,999,115 _RS22495 QEN71_RS22500: QEN71_RS22500 - primosomal replication protein N, at 4,999,118 to 4,999,417 _RS22500 QEN71_RS22505: QEN71_RS22505 - 30S ribosomal protein S6, at 4,999,494 to 4,999,868 _RS22505 QEN71_RS22510: QEN71_RS22510 - anti-sigma factor, at 5,000,070 to 5,001,020 _RS22510 QEN71_RS22515: QEN71_RS22515 - RNA polymerase sigma factor, at 5,001,010 to 5,001,849 _RS22515 QEN71_RS22520: QEN71_RS22520 - metallophosphoesterase, at 5,002,006 to 5,002,899 _RS22520 Position (kb) 5000 5001 5002Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5000.010 kb on + strandat 5000.011 kb on - strandat 5000.068 kb on + strandat 5000.068 kb on + strandat 5000.068 kb on + strandat 5000.068 kb on + strandat 5000.069 kb on - strandat 5000.212 kb on + strand, within QEN71_RS22510at 5000.213 kb on - strand, within QEN71_RS22510at 5000.213 kb on - strand, within QEN71_RS22510at 5000.275 kb on + strand, within QEN71_RS22510at 5000.276 kb on - strand, within QEN71_RS22510at 5000.276 kb on - strand, within QEN71_RS22510at 5000.276 kb on - strand, within QEN71_RS22510at 5000.276 kb on - strand, within QEN71_RS22510at 5000.276 kb on - strand, within QEN71_RS22510at 5000.305 kb on + strand, within QEN71_RS22510at 5000.306 kb on - strand, within QEN71_RS22510at 5000.306 kb on - strand, within QEN71_RS22510at 5000.339 kb on - strand, within QEN71_RS22510at 5000.401 kb on + strand, within QEN71_RS22510at 5000.402 kb on - strand, within QEN71_RS22510at 5000.858 kb on - strand, within QEN71_RS22510at 5000.892 kb on + strand, within QEN71_RS22510at 5000.933 kb on + strandat 5001.012 kb on - strandat 5001.012 kb on - strandat 5001.012 kb on - strandat 5001.187 kb on + strand, within QEN71_RS22515at 5001.188 kb on - strand, within QEN71_RS22515at 5001.368 kb on + strand, within QEN71_RS22515at 5001.369 kb on - strand, within QEN71_RS22515at 5001.369 kb on - strand, within QEN71_RS22515at 5001.587 kb on + strand, within QEN71_RS22515at 5001.587 kb on + strand, within QEN71_RS22515at 5001.587 kb on + strand, within QEN71_RS22515at 5001.587 kb on + strand, within QEN71_RS22515at 5001.588 kb on - strand, within QEN71_RS22515at 5001.588 kb on - strand, within QEN71_RS22515at 5001.588 kb on - strand, within QEN71_RS22515at 5001.588 kb on - strand, within QEN71_RS22515at 5001.659 kb on + strand, within QEN71_RS22515at 5001.659 kb on + strand, within QEN71_RS22515at 5001.660 kb on - strand, within QEN71_RS22515at 5001.734 kb on + strand, within QEN71_RS22515at 5001.734 kb on + strand, within QEN71_RS22515at 5001.734 kb on + strand, within QEN71_RS22515at 5001.734 kb on + strand, within QEN71_RS22515at 5001.734 kb on + strand, within QEN71_RS22515at 5001.734 kb on + strand, within QEN71_RS22515at 5001.734 kb on + strand, within QEN71_RS22515at 5001.735 kb on - strand, within QEN71_RS22515at 5001.735 kb on - strand, within QEN71_RS22515at 5001.735 kb on - strand, within QEN71_RS22515at 5001.735 kb on - strand, within QEN71_RS22515at 5001.735 kb on - strand, within QEN71_RS22515at 5001.735 kb on - strand, within QEN71_RS22515at 5001.735 kb on - strand, within QEN71_RS22515at 5001.892 kb on + strandat 5001.892 kb on + strandat 5001.892 kb on + strandat 5001.909 kb on - strandat 5001.939 kb on + strandat 5001.951 kb on + strandat 5001.951 kb on + strandat 5001.951 kb on + strandat 5001.952 kb on - strandat 5001.952 kb on - strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strandat 5002.020 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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5,000,010 + +0.2
5,000,011 - +0.3
5,000,068 + -0.5
5,000,068 + +1.5
5,000,068 + +1.2
5,000,068 + +1.6
5,000,069 - -1.3
5,000,212 + QEN71_RS22510 0.15 +0.2
5,000,213 - QEN71_RS22510 0.15 -1.7
5,000,213 - QEN71_RS22510 0.15 -1.2
5,000,275 + QEN71_RS22510 0.22 -0.4
5,000,276 - QEN71_RS22510 0.22 -1.3
5,000,276 - QEN71_RS22510 0.22 -0.6
5,000,276 - QEN71_RS22510 0.22 -1.9
5,000,276 - QEN71_RS22510 0.22 -1.2
5,000,276 - QEN71_RS22510 0.22 +0.2
5,000,305 + QEN71_RS22510 0.25 +0.8
5,000,306 - QEN71_RS22510 0.25 -1.5
5,000,306 - QEN71_RS22510 0.25 +0.2
5,000,339 - QEN71_RS22510 0.28 -0.6
5,000,401 + QEN71_RS22510 0.35 -1.0
5,000,402 - QEN71_RS22510 0.35 +0.2
5,000,858 - QEN71_RS22510 0.83 -0.6
5,000,892 + QEN71_RS22510 0.86 +0.2
5,000,933 + +0.2
5,001,012 - +0.4
5,001,012 - -0.7
5,001,012 - -1.1
5,001,187 + QEN71_RS22515 0.21 -0.8
5,001,188 - QEN71_RS22515 0.21 -0.5
5,001,368 + QEN71_RS22515 0.43 +0.4
5,001,369 - QEN71_RS22515 0.43 +0.4
5,001,369 - QEN71_RS22515 0.43 +0.2
5,001,587 + QEN71_RS22515 0.69 -0.1
5,001,587 + QEN71_RS22515 0.69 +0.0
5,001,587 + QEN71_RS22515 0.69 +1.3
5,001,587 + QEN71_RS22515 0.69 -1.2
5,001,588 - QEN71_RS22515 0.69 +0.7
5,001,588 - QEN71_RS22515 0.69 -0.4
5,001,588 - QEN71_RS22515 0.69 -0.5
5,001,588 - QEN71_RS22515 0.69 -0.2
5,001,659 + QEN71_RS22515 0.77 -0.2
5,001,659 + QEN71_RS22515 0.77 -0.8
5,001,660 - QEN71_RS22515 0.77 +0.2
5,001,734 + QEN71_RS22515 0.86 +0.5
5,001,734 + QEN71_RS22515 0.86 +0.2
5,001,734 + QEN71_RS22515 0.86 +0.0
5,001,734 + QEN71_RS22515 0.86 -2.1
5,001,734 + QEN71_RS22515 0.86 -0.6
5,001,734 + QEN71_RS22515 0.86 -0.2
5,001,734 + QEN71_RS22515 0.86 +0.8
5,001,735 - QEN71_RS22515 0.86 +2.8
5,001,735 - QEN71_RS22515 0.86 -0.1
5,001,735 - QEN71_RS22515 0.86 +1.0
5,001,735 - QEN71_RS22515 0.86 +0.7
5,001,735 - QEN71_RS22515 0.86 -2.1
5,001,735 - QEN71_RS22515 0.86 +0.4
5,001,735 - QEN71_RS22515 0.86 -0.4
5,001,892 + -0.3
5,001,892 + -1.7
5,001,892 + +0.7
5,001,909 - -0.5
5,001,939 + -1.8
5,001,951 + -0.5
5,001,951 + +1.8
5,001,951 + -0.9
5,001,952 - -1.3
5,001,952 - -0.0
5,002,020 + -0.6
5,002,020 + +0.7
5,002,020 + +0.1
5,002,020 + -1.0
5,002,020 + +0.4
5,002,020 + +0.4
5,002,020 + +3.0
5,002,020 + -0.0
5,002,020 + +0.2
5,002,020 + +1.2
5,002,020 + -0.3

Or see this region's nucleotide sequence