Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22495 and QEN71_RS22500 are separated by 2 nucleotides QEN71_RS22500 and QEN71_RS22505 are separated by 76 nucleotides QEN71_RS22505 and QEN71_RS22510 are separated by 201 nucleotides QEN71_RS22510 and QEN71_RS22515 overlap by 11 nucleotides QEN71_RS22515 and QEN71_RS22520 are separated by 156 nucleotides
QEN71_RS22495: QEN71_RS22495 - 30S ribosomal protein S18, at 4,998,840 to 4,999,115
_RS22495
QEN71_RS22500: QEN71_RS22500 - primosomal replication protein N, at 4,999,118 to 4,999,417
_RS22500
QEN71_RS22505: QEN71_RS22505 - 30S ribosomal protein S6, at 4,999,494 to 4,999,868
_RS22505
QEN71_RS22510: QEN71_RS22510 - anti-sigma factor, at 5,000,070 to 5,001,020
_RS22510
QEN71_RS22515: QEN71_RS22515 - RNA polymerase sigma factor, at 5,001,010 to 5,001,849
_RS22515
QEN71_RS22520: QEN71_RS22520 - metallophosphoesterase, at 5,002,006 to 5,002,899
_RS22520
Position (kb)
5000
5001
5002 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5000.010 kb on + strand at 5000.011 kb on - strand at 5000.068 kb on + strand at 5000.068 kb on + strand at 5000.068 kb on + strand at 5000.068 kb on + strand at 5000.069 kb on - strand at 5000.212 kb on + strand, within QEN71_RS22510 at 5000.213 kb on - strand, within QEN71_RS22510 at 5000.213 kb on - strand, within QEN71_RS22510 at 5000.275 kb on + strand, within QEN71_RS22510 at 5000.276 kb on - strand, within QEN71_RS22510 at 5000.276 kb on - strand, within QEN71_RS22510 at 5000.276 kb on - strand, within QEN71_RS22510 at 5000.276 kb on - strand, within QEN71_RS22510 at 5000.276 kb on - strand, within QEN71_RS22510 at 5000.305 kb on + strand, within QEN71_RS22510 at 5000.306 kb on - strand, within QEN71_RS22510 at 5000.306 kb on - strand, within QEN71_RS22510 at 5000.339 kb on - strand, within QEN71_RS22510 at 5000.401 kb on + strand, within QEN71_RS22510 at 5000.402 kb on - strand, within QEN71_RS22510 at 5000.858 kb on - strand, within QEN71_RS22510 at 5000.892 kb on + strand, within QEN71_RS22510 at 5000.933 kb on + strand at 5001.012 kb on - strand at 5001.012 kb on - strand at 5001.012 kb on - strand at 5001.187 kb on + strand, within QEN71_RS22515 at 5001.188 kb on - strand, within QEN71_RS22515 at 5001.368 kb on + strand, within QEN71_RS22515 at 5001.369 kb on - strand, within QEN71_RS22515 at 5001.369 kb on - strand, within QEN71_RS22515 at 5001.587 kb on + strand, within QEN71_RS22515 at 5001.587 kb on + strand, within QEN71_RS22515 at 5001.587 kb on + strand, within QEN71_RS22515 at 5001.587 kb on + strand, within QEN71_RS22515 at 5001.588 kb on - strand, within QEN71_RS22515 at 5001.588 kb on - strand, within QEN71_RS22515 at 5001.588 kb on - strand, within QEN71_RS22515 at 5001.588 kb on - strand, within QEN71_RS22515 at 5001.659 kb on + strand, within QEN71_RS22515 at 5001.659 kb on + strand, within QEN71_RS22515 at 5001.660 kb on - strand, within QEN71_RS22515 at 5001.734 kb on + strand, within QEN71_RS22515 at 5001.734 kb on + strand, within QEN71_RS22515 at 5001.734 kb on + strand, within QEN71_RS22515 at 5001.734 kb on + strand, within QEN71_RS22515 at 5001.734 kb on + strand, within QEN71_RS22515 at 5001.734 kb on + strand, within QEN71_RS22515 at 5001.734 kb on + strand, within QEN71_RS22515 at 5001.735 kb on - strand, within QEN71_RS22515 at 5001.735 kb on - strand, within QEN71_RS22515 at 5001.735 kb on - strand, within QEN71_RS22515 at 5001.735 kb on - strand, within QEN71_RS22515 at 5001.735 kb on - strand, within QEN71_RS22515 at 5001.735 kb on - strand, within QEN71_RS22515 at 5001.735 kb on - strand, within QEN71_RS22515 at 5001.892 kb on + strand at 5001.892 kb on + strand at 5001.892 kb on + strand at 5001.909 kb on - strand at 5001.939 kb on + strand at 5001.951 kb on + strand at 5001.951 kb on + strand at 5001.951 kb on + strand at 5001.952 kb on - strand at 5001.952 kb on - strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand at 5002.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 5,000,010 + +0.2 5,000,011 - +0.3 5,000,068 + -0.5 5,000,068 + +1.5 5,000,068 + +1.2 5,000,068 + +1.6 5,000,069 - -1.3 5,000,212 + QEN71_RS22510 0.15 +0.2 5,000,213 - QEN71_RS22510 0.15 -1.7 5,000,213 - QEN71_RS22510 0.15 -1.2 5,000,275 + QEN71_RS22510 0.22 -0.4 5,000,276 - QEN71_RS22510 0.22 -1.3 5,000,276 - QEN71_RS22510 0.22 -0.6 5,000,276 - QEN71_RS22510 0.22 -1.9 5,000,276 - QEN71_RS22510 0.22 -1.2 5,000,276 - QEN71_RS22510 0.22 +0.2 5,000,305 + QEN71_RS22510 0.25 +0.8 5,000,306 - QEN71_RS22510 0.25 -1.5 5,000,306 - QEN71_RS22510 0.25 +0.2 5,000,339 - QEN71_RS22510 0.28 -0.6 5,000,401 + QEN71_RS22510 0.35 -1.0 5,000,402 - QEN71_RS22510 0.35 +0.2 5,000,858 - QEN71_RS22510 0.83 -0.6 5,000,892 + QEN71_RS22510 0.86 +0.2 5,000,933 + +0.2 5,001,012 - +0.4 5,001,012 - -0.7 5,001,012 - -1.1 5,001,187 + QEN71_RS22515 0.21 -0.8 5,001,188 - QEN71_RS22515 0.21 -0.5 5,001,368 + QEN71_RS22515 0.43 +0.4 5,001,369 - QEN71_RS22515 0.43 +0.4 5,001,369 - QEN71_RS22515 0.43 +0.2 5,001,587 + QEN71_RS22515 0.69 -0.1 5,001,587 + QEN71_RS22515 0.69 +0.0 5,001,587 + QEN71_RS22515 0.69 +1.3 5,001,587 + QEN71_RS22515 0.69 -1.2 5,001,588 - QEN71_RS22515 0.69 +0.7 5,001,588 - QEN71_RS22515 0.69 -0.4 5,001,588 - QEN71_RS22515 0.69 -0.5 5,001,588 - QEN71_RS22515 0.69 -0.2 5,001,659 + QEN71_RS22515 0.77 -0.2 5,001,659 + QEN71_RS22515 0.77 -0.8 5,001,660 - QEN71_RS22515 0.77 +0.2 5,001,734 + QEN71_RS22515 0.86 +0.5 5,001,734 + QEN71_RS22515 0.86 +0.2 5,001,734 + QEN71_RS22515 0.86 +0.0 5,001,734 + QEN71_RS22515 0.86 -2.1 5,001,734 + QEN71_RS22515 0.86 -0.6 5,001,734 + QEN71_RS22515 0.86 -0.2 5,001,734 + QEN71_RS22515 0.86 +0.8 5,001,735 - QEN71_RS22515 0.86 +2.8 5,001,735 - QEN71_RS22515 0.86 -0.1 5,001,735 - QEN71_RS22515 0.86 +1.0 5,001,735 - QEN71_RS22515 0.86 +0.7 5,001,735 - QEN71_RS22515 0.86 -2.1 5,001,735 - QEN71_RS22515 0.86 +0.4 5,001,735 - QEN71_RS22515 0.86 -0.4 5,001,892 + -0.3 5,001,892 + -1.7 5,001,892 + +0.7 5,001,909 - -0.5 5,001,939 + -1.8 5,001,951 + -0.5 5,001,951 + +1.8 5,001,951 + -0.9 5,001,952 - -1.3 5,001,952 - -0.0 5,002,020 + -0.6 5,002,020 + +0.7 5,002,020 + +0.1 5,002,020 + -1.0 5,002,020 + +0.4 5,002,020 + +0.4 5,002,020 + +3.0 5,002,020 + -0.0 5,002,020 + +0.2 5,002,020 + +1.2 5,002,020 + -0.3
Or see this region's nucleotide sequence