Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22210 and QEN71_RS22215 overlap by 4 nucleotides QEN71_RS22215 and QEN71_RS22220 are separated by 39 nucleotides
QEN71_RS22210: QEN71_RS22210 - peptidoglycan editing factor PgeF, at 4,931,124 to 4,931,963
_RS22210
QEN71_RS22215: QEN71_RS22215 - RluA family pseudouridine synthase, at 4,931,960 to 4,933,282
_RS22215
QEN71_RS22220: QEN71_RS22220 - outer membrane protein assembly factor BamD, at 4,933,322 to 4,934,179
_RS22220
Position (kb)
4931
4932
4933
4934 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4931.004 kb on + strand at 4931.014 kb on + strand at 4931.014 kb on + strand at 4931.014 kb on + strand at 4931.014 kb on + strand at 4931.014 kb on + strand at 4931.015 kb on - strand at 4931.015 kb on - strand at 4931.015 kb on - strand at 4931.034 kb on + strand at 4931.034 kb on + strand at 4931.035 kb on - strand at 4931.051 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.102 kb on + strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.103 kb on - strand at 4931.114 kb on + strand at 4931.114 kb on + strand at 4931.114 kb on + strand at 4931.114 kb on + strand at 4931.115 kb on - strand at 4931.182 kb on + strand at 4931.183 kb on - strand at 4931.293 kb on + strand, within QEN71_RS22210 at 4931.293 kb on + strand, within QEN71_RS22210 at 4931.293 kb on + strand, within QEN71_RS22210 at 4931.293 kb on + strand, within QEN71_RS22210 at 4931.293 kb on + strand, within QEN71_RS22210 at 4931.293 kb on + strand, within QEN71_RS22210 at 4931.294 kb on - strand, within QEN71_RS22210 at 4931.294 kb on - strand, within QEN71_RS22210 at 4931.294 kb on - strand, within QEN71_RS22210 at 4931.294 kb on - strand, within QEN71_RS22210 at 4931.294 kb on - strand, within QEN71_RS22210 at 4931.294 kb on - strand, within QEN71_RS22210 at 4931.294 kb on - strand, within QEN71_RS22210 at 4931.431 kb on + strand, within QEN71_RS22210 at 4931.431 kb on + strand, within QEN71_RS22210 at 4931.431 kb on + strand, within QEN71_RS22210 at 4931.431 kb on + strand, within QEN71_RS22210 at 4931.431 kb on + strand, within QEN71_RS22210 at 4931.431 kb on + strand, within QEN71_RS22210 at 4931.431 kb on + strand, within QEN71_RS22210 at 4931.432 kb on - strand, within QEN71_RS22210 at 4931.432 kb on - strand, within QEN71_RS22210 at 4931.432 kb on - strand, within QEN71_RS22210 at 4931.486 kb on + strand, within QEN71_RS22210 at 4931.487 kb on - strand, within QEN71_RS22210 at 4931.601 kb on + strand, within QEN71_RS22210 at 4931.601 kb on + strand, within QEN71_RS22210 at 4931.955 kb on + strand at 4931.955 kb on + strand at 4931.955 kb on + strand at 4931.955 kb on + strand at 4931.955 kb on + strand at 4931.955 kb on + strand at 4931.956 kb on - strand at 4931.956 kb on - strand at 4931.956 kb on - strand at 4931.956 kb on - strand at 4931.956 kb on - strand at 4931.956 kb on - strand at 4932.027 kb on + strand at 4932.069 kb on + strand at 4932.069 kb on + strand at 4932.070 kb on - strand at 4932.070 kb on - strand at 4932.078 kb on + strand at 4932.078 kb on + strand at 4932.078 kb on + strand at 4932.078 kb on + strand at 4932.079 kb on - strand at 4932.079 kb on - strand at 4932.090 kb on + strand at 4932.090 kb on + strand at 4932.090 kb on + strand at 4932.314 kb on - strand, within QEN71_RS22215 at 4933.198 kb on + strand at 4933.198 kb on + strand at 4933.198 kb on + strand at 4933.199 kb on - strand at 4933.199 kb on - strand at 4933.200 kb on + strand at 4933.267 kb on + strand at 4933.304 kb on + strand at 4933.311 kb on + strand at 4933.311 kb on + strand at 4933.311 kb on + strand at 4934.126 kb on + strand at 4934.126 kb on + strand at 4934.126 kb on + strand at 4934.126 kb on + strand at 4934.126 kb on + strand at 4934.127 kb on - strand at 4934.127 kb on - strand at 4934.127 kb on - strand at 4934.259 kb on + strand at 4934.259 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 4,931,004 + +0.5 4,931,014 + -0.5 4,931,014 + +2.0 4,931,014 + -1.5 4,931,014 + +2.6 4,931,014 + -0.9 4,931,015 - +0.4 4,931,015 - -0.0 4,931,015 - -0.6 4,931,034 + -1.8 4,931,034 + +0.7 4,931,035 - +0.3 4,931,051 + +0.2 4,931,102 + -0.6 4,931,102 + +1.3 4,931,102 + -0.7 4,931,102 + +0.1 4,931,102 + -1.5 4,931,102 + +0.9 4,931,102 + -0.2 4,931,102 + -0.1 4,931,102 + -0.2 4,931,102 + -1.9 4,931,102 + -0.4 4,931,102 + -1.0 4,931,103 - -0.5 4,931,103 - -0.8 4,931,103 - -1.5 4,931,103 - -0.6 4,931,103 - +0.2 4,931,103 - -1.7 4,931,103 - -0.4 4,931,103 - -0.4 4,931,103 - +1.6 4,931,114 + -1.0 4,931,114 + -0.3 4,931,114 + +0.2 4,931,114 + +0.9 4,931,115 - -0.6 4,931,182 + -0.7 4,931,183 - +0.7 4,931,293 + QEN71_RS22210 0.20 +1.2 4,931,293 + QEN71_RS22210 0.20 +0.7 4,931,293 + QEN71_RS22210 0.20 -1.8 4,931,293 + QEN71_RS22210 0.20 -0.1 4,931,293 + QEN71_RS22210 0.20 -0.2 4,931,293 + QEN71_RS22210 0.20 -0.7 4,931,294 - QEN71_RS22210 0.20 -1.1 4,931,294 - QEN71_RS22210 0.20 +0.4 4,931,294 - QEN71_RS22210 0.20 +1.0 4,931,294 - QEN71_RS22210 0.20 -0.0 4,931,294 - QEN71_RS22210 0.20 +2.0 4,931,294 - QEN71_RS22210 0.20 -0.5 4,931,294 - QEN71_RS22210 0.20 +0.1 4,931,431 + QEN71_RS22210 0.37 -0.3 4,931,431 + QEN71_RS22210 0.37 +0.3 4,931,431 + QEN71_RS22210 0.37 +0.6 4,931,431 + QEN71_RS22210 0.37 +0.6 4,931,431 + QEN71_RS22210 0.37 +1.9 4,931,431 + QEN71_RS22210 0.37 -2.0 4,931,431 + QEN71_RS22210 0.37 -0.3 4,931,432 - QEN71_RS22210 0.37 +1.4 4,931,432 - QEN71_RS22210 0.37 +0.5 4,931,432 - QEN71_RS22210 0.37 -0.1 4,931,486 + QEN71_RS22210 0.43 -1.1 4,931,487 - QEN71_RS22210 0.43 -0.4 4,931,601 + QEN71_RS22210 0.57 +0.7 4,931,601 + QEN71_RS22210 0.57 -0.1 4,931,955 + -1.5 4,931,955 + +0.2 4,931,955 + +0.6 4,931,955 + -0.7 4,931,955 + -0.5 4,931,955 + +0.0 4,931,956 - -0.4 4,931,956 - +0.4 4,931,956 - +0.3 4,931,956 - +1.3 4,931,956 - -0.3 4,931,956 - +0.3 4,932,027 + -0.8 4,932,069 + -0.1 4,932,069 + +0.6 4,932,070 - -0.5 4,932,070 - +0.2 4,932,078 + -0.3 4,932,078 + -0.2 4,932,078 + -0.5 4,932,078 + +0.2 4,932,079 - -1.4 4,932,079 - -0.4 4,932,090 + -1.8 4,932,090 + -1.6 4,932,090 + -0.8 4,932,314 - QEN71_RS22215 0.27 -0.8 4,933,198 + -0.7 4,933,198 + -1.2 4,933,198 + -1.5 4,933,199 - +0.2 4,933,199 - -2.2 4,933,200 + -0.4 4,933,267 + -1.5 4,933,304 + -2.1 4,933,311 + -1.9 4,933,311 + -1.2 4,933,311 + +1.3 4,934,126 + -1.5 4,934,126 + -1.5 4,934,126 + -0.4 4,934,126 + -0.4 4,934,126 + -0.1 4,934,127 - -1.5 4,934,127 - -1.2 4,934,127 - -2.7 4,934,259 + -0.8 4,934,259 + -0.2
Or see this region's nucleotide sequence