Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22215

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22210 and QEN71_RS22215 overlap by 4 nucleotidesQEN71_RS22215 and QEN71_RS22220 are separated by 39 nucleotides QEN71_RS22210: QEN71_RS22210 - peptidoglycan editing factor PgeF, at 4,931,124 to 4,931,963 _RS22210 QEN71_RS22215: QEN71_RS22215 - RluA family pseudouridine synthase, at 4,931,960 to 4,933,282 _RS22215 QEN71_RS22220: QEN71_RS22220 - outer membrane protein assembly factor BamD, at 4,933,322 to 4,934,179 _RS22220 Position (kb) 4931 4932 4933 4934Strain fitness (log2 ratio) -2 -1 0 1 2at 4931.004 kb on + strandat 4931.014 kb on + strandat 4931.014 kb on + strandat 4931.014 kb on + strandat 4931.014 kb on + strandat 4931.014 kb on + strandat 4931.015 kb on - strandat 4931.015 kb on - strandat 4931.015 kb on - strandat 4931.034 kb on + strandat 4931.034 kb on + strandat 4931.035 kb on - strandat 4931.051 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.102 kb on + strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.103 kb on - strandat 4931.114 kb on + strandat 4931.114 kb on + strandat 4931.114 kb on + strandat 4931.114 kb on + strandat 4931.115 kb on - strandat 4931.182 kb on + strandat 4931.183 kb on - strandat 4931.293 kb on + strand, within QEN71_RS22210at 4931.293 kb on + strand, within QEN71_RS22210at 4931.293 kb on + strand, within QEN71_RS22210at 4931.293 kb on + strand, within QEN71_RS22210at 4931.293 kb on + strand, within QEN71_RS22210at 4931.293 kb on + strand, within QEN71_RS22210at 4931.294 kb on - strand, within QEN71_RS22210at 4931.294 kb on - strand, within QEN71_RS22210at 4931.294 kb on - strand, within QEN71_RS22210at 4931.294 kb on - strand, within QEN71_RS22210at 4931.294 kb on - strand, within QEN71_RS22210at 4931.294 kb on - strand, within QEN71_RS22210at 4931.294 kb on - strand, within QEN71_RS22210at 4931.431 kb on + strand, within QEN71_RS22210at 4931.431 kb on + strand, within QEN71_RS22210at 4931.431 kb on + strand, within QEN71_RS22210at 4931.431 kb on + strand, within QEN71_RS22210at 4931.431 kb on + strand, within QEN71_RS22210at 4931.431 kb on + strand, within QEN71_RS22210at 4931.431 kb on + strand, within QEN71_RS22210at 4931.432 kb on - strand, within QEN71_RS22210at 4931.432 kb on - strand, within QEN71_RS22210at 4931.432 kb on - strand, within QEN71_RS22210at 4931.486 kb on + strand, within QEN71_RS22210at 4931.487 kb on - strand, within QEN71_RS22210at 4931.601 kb on + strand, within QEN71_RS22210at 4931.601 kb on + strand, within QEN71_RS22210at 4931.955 kb on + strandat 4931.955 kb on + strandat 4931.955 kb on + strandat 4931.955 kb on + strandat 4931.955 kb on + strandat 4931.955 kb on + strandat 4931.956 kb on - strandat 4931.956 kb on - strandat 4931.956 kb on - strandat 4931.956 kb on - strandat 4931.956 kb on - strandat 4931.956 kb on - strandat 4932.027 kb on + strandat 4932.069 kb on + strandat 4932.069 kb on + strandat 4932.070 kb on - strandat 4932.070 kb on - strandat 4932.078 kb on + strandat 4932.078 kb on + strandat 4932.078 kb on + strandat 4932.078 kb on + strandat 4932.079 kb on - strandat 4932.079 kb on - strandat 4932.090 kb on + strandat 4932.090 kb on + strandat 4932.090 kb on + strandat 4932.314 kb on - strand, within QEN71_RS22215at 4933.198 kb on + strandat 4933.198 kb on + strandat 4933.198 kb on + strandat 4933.199 kb on - strandat 4933.199 kb on - strandat 4933.200 kb on + strandat 4933.267 kb on + strandat 4933.304 kb on + strandat 4933.311 kb on + strandat 4933.311 kb on + strandat 4933.311 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.127 kb on - strandat 4934.127 kb on - strandat 4934.127 kb on - strandat 4934.259 kb on + strandat 4934.259 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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4,931,004 + +0.5
4,931,014 + -0.5
4,931,014 + +2.0
4,931,014 + -1.5
4,931,014 + +2.6
4,931,014 + -0.9
4,931,015 - +0.4
4,931,015 - -0.0
4,931,015 - -0.6
4,931,034 + -1.8
4,931,034 + +0.7
4,931,035 - +0.3
4,931,051 + +0.2
4,931,102 + -0.6
4,931,102 + +1.3
4,931,102 + -0.7
4,931,102 + +0.1
4,931,102 + -1.5
4,931,102 + +0.9
4,931,102 + -0.2
4,931,102 + -0.1
4,931,102 + -0.2
4,931,102 + -1.9
4,931,102 + -0.4
4,931,102 + -1.0
4,931,103 - -0.5
4,931,103 - -0.8
4,931,103 - -1.5
4,931,103 - -0.6
4,931,103 - +0.2
4,931,103 - -1.7
4,931,103 - -0.4
4,931,103 - -0.4
4,931,103 - +1.6
4,931,114 + -1.0
4,931,114 + -0.3
4,931,114 + +0.2
4,931,114 + +0.9
4,931,115 - -0.6
4,931,182 + -0.7
4,931,183 - +0.7
4,931,293 + QEN71_RS22210 0.20 +1.2
4,931,293 + QEN71_RS22210 0.20 +0.7
4,931,293 + QEN71_RS22210 0.20 -1.8
4,931,293 + QEN71_RS22210 0.20 -0.1
4,931,293 + QEN71_RS22210 0.20 -0.2
4,931,293 + QEN71_RS22210 0.20 -0.7
4,931,294 - QEN71_RS22210 0.20 -1.1
4,931,294 - QEN71_RS22210 0.20 +0.4
4,931,294 - QEN71_RS22210 0.20 +1.0
4,931,294 - QEN71_RS22210 0.20 -0.0
4,931,294 - QEN71_RS22210 0.20 +2.0
4,931,294 - QEN71_RS22210 0.20 -0.5
4,931,294 - QEN71_RS22210 0.20 +0.1
4,931,431 + QEN71_RS22210 0.37 -0.3
4,931,431 + QEN71_RS22210 0.37 +0.3
4,931,431 + QEN71_RS22210 0.37 +0.6
4,931,431 + QEN71_RS22210 0.37 +0.6
4,931,431 + QEN71_RS22210 0.37 +1.9
4,931,431 + QEN71_RS22210 0.37 -2.0
4,931,431 + QEN71_RS22210 0.37 -0.3
4,931,432 - QEN71_RS22210 0.37 +1.4
4,931,432 - QEN71_RS22210 0.37 +0.5
4,931,432 - QEN71_RS22210 0.37 -0.1
4,931,486 + QEN71_RS22210 0.43 -1.1
4,931,487 - QEN71_RS22210 0.43 -0.4
4,931,601 + QEN71_RS22210 0.57 +0.7
4,931,601 + QEN71_RS22210 0.57 -0.1
4,931,955 + -1.5
4,931,955 + +0.2
4,931,955 + +0.6
4,931,955 + -0.7
4,931,955 + -0.5
4,931,955 + +0.0
4,931,956 - -0.4
4,931,956 - +0.4
4,931,956 - +0.3
4,931,956 - +1.3
4,931,956 - -0.3
4,931,956 - +0.3
4,932,027 + -0.8
4,932,069 + -0.1
4,932,069 + +0.6
4,932,070 - -0.5
4,932,070 - +0.2
4,932,078 + -0.3
4,932,078 + -0.2
4,932,078 + -0.5
4,932,078 + +0.2
4,932,079 - -1.4
4,932,079 - -0.4
4,932,090 + -1.8
4,932,090 + -1.6
4,932,090 + -0.8
4,932,314 - QEN71_RS22215 0.27 -0.8
4,933,198 + -0.7
4,933,198 + -1.2
4,933,198 + -1.5
4,933,199 - +0.2
4,933,199 - -2.2
4,933,200 + -0.4
4,933,267 + -1.5
4,933,304 + -2.1
4,933,311 + -1.9
4,933,311 + -1.2
4,933,311 + +1.3
4,934,126 + -1.5
4,934,126 + -1.5
4,934,126 + -0.4
4,934,126 + -0.4
4,934,126 + -0.1
4,934,127 - -1.5
4,934,127 - -1.2
4,934,127 - -2.7
4,934,259 + -0.8
4,934,259 + -0.2

Or see this region's nucleotide sequence