Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS20960 and QEN71_RS20965 are separated by 95 nucleotides QEN71_RS20965 and QEN71_RS20970 are separated by 306 nucleotides
QEN71_RS20960: QEN71_RS20960 - glycogen/starch/alpha-glucan phosphorylase, at 4,646,335 to 4,648,827
_RS20960
QEN71_RS20965: QEN71_RS20965 - LysR family transcriptional regulator, at 4,648,923 to 4,649,852
_RS20965
QEN71_RS20970: QEN71_RS20970 - response regulator transcription factor, at 4,650,159 to 4,650,928
_RS20970
Position (kb)
4648
4649
4650 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4647.929 kb on + strand, within QEN71_RS20960 at 4647.981 kb on - strand, within QEN71_RS20960 at 4648.032 kb on - strand, within QEN71_RS20960 at 4648.101 kb on + strand, within QEN71_RS20960 at 4648.102 kb on - strand, within QEN71_RS20960 at 4648.102 kb on - strand, within QEN71_RS20960 at 4648.164 kb on - strand, within QEN71_RS20960 at 4648.238 kb on + strand, within QEN71_RS20960 at 4648.238 kb on + strand, within QEN71_RS20960 at 4648.406 kb on + strand, within QEN71_RS20960 at 4648.407 kb on - strand, within QEN71_RS20960 at 4648.407 kb on - strand, within QEN71_RS20960 at 4648.407 kb on - strand, within QEN71_RS20960 at 4648.407 kb on - strand, within QEN71_RS20960 at 4648.583 kb on + strand at 4648.584 kb on - strand at 4648.584 kb on - strand at 4648.613 kb on + strand at 4648.664 kb on + strand at 4648.677 kb on + strand at 4648.678 kb on - strand at 4648.679 kb on + strand at 4648.680 kb on - strand at 4648.680 kb on - strand at 4648.682 kb on + strand at 4648.924 kb on + strand at 4648.924 kb on + strand at 4649.153 kb on + strand, within QEN71_RS20965 at 4649.153 kb on + strand, within QEN71_RS20965 at 4649.153 kb on + strand, within QEN71_RS20965 at 4649.417 kb on + strand, within QEN71_RS20965 at 4649.494 kb on + strand, within QEN71_RS20965 at 4649.494 kb on + strand, within QEN71_RS20965 at 4649.865 kb on + strand at 4649.865 kb on + strand at 4650.057 kb on + strand at 4650.061 kb on + strand at 4650.082 kb on + strand at 4650.083 kb on - strand at 4650.092 kb on + strand at 4650.093 kb on - strand at 4650.093 kb on - strand at 4650.142 kb on + strand at 4650.148 kb on + strand at 4650.149 kb on - strand at 4650.149 kb on - strand at 4650.149 kb on - strand at 4650.225 kb on + strand at 4650.496 kb on - strand, within QEN71_RS20970 at 4650.827 kb on + strand, within QEN71_RS20970 at 4650.828 kb on - strand, within QEN71_RS20970
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 4,647,929 + QEN71_RS20960 0.64 -0.1 4,647,981 - QEN71_RS20960 0.66 +1.2 4,648,032 - QEN71_RS20960 0.68 +1.5 4,648,101 + QEN71_RS20960 0.71 +0.3 4,648,102 - QEN71_RS20960 0.71 -0.0 4,648,102 - QEN71_RS20960 0.71 +1.7 4,648,164 - QEN71_RS20960 0.73 -0.3 4,648,238 + QEN71_RS20960 0.76 -0.1 4,648,238 + QEN71_RS20960 0.76 +0.8 4,648,406 + QEN71_RS20960 0.83 +0.6 4,648,407 - QEN71_RS20960 0.83 +0.2 4,648,407 - QEN71_RS20960 0.83 -0.5 4,648,407 - QEN71_RS20960 0.83 +0.2 4,648,407 - QEN71_RS20960 0.83 -0.3 4,648,583 + -0.1 4,648,584 - +1.0 4,648,584 - -0.6 4,648,613 + +1.6 4,648,664 + +0.1 4,648,677 + -0.1 4,648,678 - +0.1 4,648,679 + +0.6 4,648,680 - -0.8 4,648,680 - -0.2 4,648,682 + -1.9 4,648,924 + -1.2 4,648,924 + -0.5 4,649,153 + QEN71_RS20965 0.25 -1.4 4,649,153 + QEN71_RS20965 0.25 +0.1 4,649,153 + QEN71_RS20965 0.25 -0.7 4,649,417 + QEN71_RS20965 0.53 -0.2 4,649,494 + QEN71_RS20965 0.61 -1.1 4,649,494 + QEN71_RS20965 0.61 -1.0 4,649,865 + -1.3 4,649,865 + -0.9 4,650,057 + -0.6 4,650,061 + -0.2 4,650,082 + +0.1 4,650,083 - +0.4 4,650,092 + +1.2 4,650,093 - +0.5 4,650,093 - -0.6 4,650,142 + +2.1 4,650,148 + +0.6 4,650,149 - -0.2 4,650,149 - +0.7 4,650,149 - -0.3 4,650,225 + -0.0 4,650,496 - QEN71_RS20970 0.44 +0.3 4,650,827 + QEN71_RS20970 0.87 -0.4 4,650,828 - QEN71_RS20970 0.87 +2.5
Or see this region's nucleotide sequence