Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS20965

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS20960 and QEN71_RS20965 are separated by 95 nucleotidesQEN71_RS20965 and QEN71_RS20970 are separated by 306 nucleotides QEN71_RS20960: QEN71_RS20960 - glycogen/starch/alpha-glucan phosphorylase, at 4,646,335 to 4,648,827 _RS20960 QEN71_RS20965: QEN71_RS20965 - LysR family transcriptional regulator, at 4,648,923 to 4,649,852 _RS20965 QEN71_RS20970: QEN71_RS20970 - response regulator transcription factor, at 4,650,159 to 4,650,928 _RS20970 Position (kb) 4648 4649 4650Strain fitness (log2 ratio) -2 -1 0 1 2at 4647.929 kb on + strand, within QEN71_RS20960at 4647.981 kb on - strand, within QEN71_RS20960at 4648.032 kb on - strand, within QEN71_RS20960at 4648.101 kb on + strand, within QEN71_RS20960at 4648.102 kb on - strand, within QEN71_RS20960at 4648.102 kb on - strand, within QEN71_RS20960at 4648.164 kb on - strand, within QEN71_RS20960at 4648.238 kb on + strand, within QEN71_RS20960at 4648.238 kb on + strand, within QEN71_RS20960at 4648.406 kb on + strand, within QEN71_RS20960at 4648.407 kb on - strand, within QEN71_RS20960at 4648.407 kb on - strand, within QEN71_RS20960at 4648.407 kb on - strand, within QEN71_RS20960at 4648.407 kb on - strand, within QEN71_RS20960at 4648.583 kb on + strandat 4648.584 kb on - strandat 4648.584 kb on - strandat 4648.613 kb on + strandat 4648.664 kb on + strandat 4648.677 kb on + strandat 4648.678 kb on - strandat 4648.679 kb on + strandat 4648.680 kb on - strandat 4648.680 kb on - strandat 4648.682 kb on + strandat 4648.924 kb on + strandat 4648.924 kb on + strandat 4649.153 kb on + strand, within QEN71_RS20965at 4649.153 kb on + strand, within QEN71_RS20965at 4649.153 kb on + strand, within QEN71_RS20965at 4649.417 kb on + strand, within QEN71_RS20965at 4649.494 kb on + strand, within QEN71_RS20965at 4649.494 kb on + strand, within QEN71_RS20965at 4649.865 kb on + strandat 4649.865 kb on + strandat 4650.057 kb on + strandat 4650.061 kb on + strandat 4650.082 kb on + strandat 4650.083 kb on - strandat 4650.092 kb on + strandat 4650.093 kb on - strandat 4650.093 kb on - strandat 4650.142 kb on + strandat 4650.148 kb on + strandat 4650.149 kb on - strandat 4650.149 kb on - strandat 4650.149 kb on - strandat 4650.225 kb on + strandat 4650.496 kb on - strand, within QEN71_RS20970at 4650.827 kb on + strand, within QEN71_RS20970at 4650.828 kb on - strand, within QEN71_RS20970

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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4,647,929 + QEN71_RS20960 0.64 -0.1
4,647,981 - QEN71_RS20960 0.66 +1.2
4,648,032 - QEN71_RS20960 0.68 +1.5
4,648,101 + QEN71_RS20960 0.71 +0.3
4,648,102 - QEN71_RS20960 0.71 -0.0
4,648,102 - QEN71_RS20960 0.71 +1.7
4,648,164 - QEN71_RS20960 0.73 -0.3
4,648,238 + QEN71_RS20960 0.76 -0.1
4,648,238 + QEN71_RS20960 0.76 +0.8
4,648,406 + QEN71_RS20960 0.83 +0.6
4,648,407 - QEN71_RS20960 0.83 +0.2
4,648,407 - QEN71_RS20960 0.83 -0.5
4,648,407 - QEN71_RS20960 0.83 +0.2
4,648,407 - QEN71_RS20960 0.83 -0.3
4,648,583 + -0.1
4,648,584 - +1.0
4,648,584 - -0.6
4,648,613 + +1.6
4,648,664 + +0.1
4,648,677 + -0.1
4,648,678 - +0.1
4,648,679 + +0.6
4,648,680 - -0.8
4,648,680 - -0.2
4,648,682 + -1.9
4,648,924 + -1.2
4,648,924 + -0.5
4,649,153 + QEN71_RS20965 0.25 -1.4
4,649,153 + QEN71_RS20965 0.25 +0.1
4,649,153 + QEN71_RS20965 0.25 -0.7
4,649,417 + QEN71_RS20965 0.53 -0.2
4,649,494 + QEN71_RS20965 0.61 -1.1
4,649,494 + QEN71_RS20965 0.61 -1.0
4,649,865 + -1.3
4,649,865 + -0.9
4,650,057 + -0.6
4,650,061 + -0.2
4,650,082 + +0.1
4,650,083 - +0.4
4,650,092 + +1.2
4,650,093 - +0.5
4,650,093 - -0.6
4,650,142 + +2.1
4,650,148 + +0.6
4,650,149 - -0.2
4,650,149 - +0.7
4,650,149 - -0.3
4,650,225 + -0.0
4,650,496 - QEN71_RS20970 0.44 +0.3
4,650,827 + QEN71_RS20970 0.87 -0.4
4,650,828 - QEN71_RS20970 0.87 +2.5

Or see this region's nucleotide sequence