Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS20115 and QEN71_RS20120 are separated by 102 nucleotides QEN71_RS20120 and QEN71_RS20125 are separated by 16 nucleotides QEN71_RS20125 and QEN71_RS20130 are separated by 548 nucleotides
QEN71_RS20115: QEN71_RS20115 - Nramp family divalent metal transporter, at 4,478,569 to 4,479,897
_RS20115
QEN71_RS20120: QEN71_RS20120 - flagellar transcriptional regulator FlhC, at 4,480,000 to 4,480,623
_RS20120
QEN71_RS20125: QEN71_RS20125 - flagellar transcriptional regulator FlhD, at 4,480,640 to 4,480,960
_RS20125
QEN71_RS20130: QEN71_RS20130 - YeeE/YedE family protein, at 4,481,509 to 4,482,723
_RS20130
Position (kb) 4479
4480
4481 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 4479.214 kb on + strand, within QEN71_RS20115 at 4479.214 kb on + strand, within QEN71_RS20115 at 4479.215 kb on - strand, within QEN71_RS20115 at 4479.215 kb on - strand, within QEN71_RS20115 at 4479.215 kb on - strand, within QEN71_RS20115 at 4479.262 kb on + strand, within QEN71_RS20115 at 4479.263 kb on - strand, within QEN71_RS20115 at 4479.263 kb on - strand, within QEN71_RS20115 at 4479.263 kb on - strand, within QEN71_RS20115 at 4479.342 kb on + strand, within QEN71_RS20115 at 4479.342 kb on + strand, within QEN71_RS20115 at 4479.349 kb on - strand, within QEN71_RS20115 at 4479.461 kb on - strand, within QEN71_RS20115 at 4479.611 kb on - strand, within QEN71_RS20115 at 4479.749 kb on - strand, within QEN71_RS20115 at 4479.858 kb on + strand at 4479.858 kb on + strand at 4479.858 kb on + strand at 4479.858 kb on + strand at 4479.858 kb on + strand at 4479.859 kb on - strand at 4479.859 kb on - strand at 4479.859 kb on - strand at 4479.911 kb on - strand at 4479.962 kb on + strand at 4479.962 kb on + strand at 4479.963 kb on - strand at 4479.963 kb on - strand at 4479.963 kb on - strand at 4480.299 kb on + strand, within QEN71_RS20120 at 4480.299 kb on + strand, within QEN71_RS20120 at 4480.319 kb on + strand, within QEN71_RS20120 at 4480.319 kb on + strand, within QEN71_RS20120 at 4480.319 kb on + strand, within QEN71_RS20120 at 4480.320 kb on - strand, within QEN71_RS20120 at 4480.320 kb on - strand, within QEN71_RS20120 at 4480.320 kb on - strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.385 kb on + strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.386 kb on - strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.394 kb on + strand, within QEN71_RS20120 at 4480.395 kb on - strand, within QEN71_RS20120 at 4480.395 kb on - strand, within QEN71_RS20120 at 4480.395 kb on - strand, within QEN71_RS20120 at 4480.395 kb on - strand, within QEN71_RS20120 at 4480.433 kb on + strand, within QEN71_RS20120 at 4480.433 kb on + strand, within QEN71_RS20120 at 4480.433 kb on + strand, within QEN71_RS20120 at 4480.433 kb on + strand, within QEN71_RS20120 at 4480.433 kb on + strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.434 kb on - strand, within QEN71_RS20120 at 4480.605 kb on + strand at 4480.606 kb on - strand at 4480.641 kb on + strand at 4480.642 kb on - strand at 4480.642 kb on - strand at 4480.825 kb on + strand, within QEN71_RS20125 at 4480.825 kb on + strand, within QEN71_RS20125 at 4480.826 kb on - strand, within QEN71_RS20125 at 4480.826 kb on - strand, within QEN71_RS20125 at 4480.826 kb on - strand, within QEN71_RS20125 at 4480.826 kb on - strand, within QEN71_RS20125 at 4480.826 kb on - strand, within QEN71_RS20125 at 4480.908 kb on + strand, within QEN71_RS20125 at 4480.931 kb on - strand at 4480.931 kb on - strand at 4480.951 kb on + strand at 4480.952 kb on - strand at 4480.952 kb on - strand at 4480.952 kb on - strand at 4481.012 kb on - strand at 4481.019 kb on + strand at 4481.019 kb on + strand at 4481.019 kb on + strand at 4481.019 kb on + strand at 4481.019 kb on + strand at 4481.019 kb on + strand at 4481.020 kb on - strand at 4481.020 kb on - strand at 4481.020 kb on - strand at 4481.020 kb on - strand at 4481.020 kb on - strand at 4481.020 kb on - strand at 4481.020 kb on - strand at 4481.020 kb on - strand at 4481.068 kb on + strand at 4481.068 kb on + strand at 4481.068 kb on + strand at 4481.068 kb on + strand at 4481.068 kb on + strand at 4481.068 kb on + strand at 4481.068 kb on + strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.069 kb on - strand at 4481.088 kb on + strand at 4481.088 kb on + strand at 4481.088 kb on + strand at 4481.088 kb on + strand at 4481.088 kb on + strand at 4481.089 kb on - strand at 4481.089 kb on - strand at 4481.098 kb on + strand at 4481.098 kb on + strand at 4481.099 kb on - strand at 4481.107 kb on + strand at 4481.127 kb on + strand at 4481.127 kb on + strand at 4481.127 kb on + strand at 4481.127 kb on + strand at 4481.127 kb on + strand at 4481.128 kb on - strand at 4481.128 kb on - strand at 4481.128 kb on - strand at 4481.128 kb on - strand at 4481.128 kb on - strand at 4481.128 kb on - strand at 4481.128 kb on - strand at 4481.128 kb on - strand at 4481.152 kb on + strand at 4481.152 kb on + strand at 4481.219 kb on + strand at 4481.219 kb on + strand at 4481.219 kb on + strand at 4481.226 kb on + strand at 4481.226 kb on + strand at 4481.226 kb on + strand at 4481.226 kb on + strand at 4481.227 kb on - strand at 4481.227 kb on - strand at 4481.227 kb on - strand at 4481.227 kb on - strand at 4481.227 kb on - strand at 4481.227 kb on - strand at 4481.230 kb on + strand at 4481.231 kb on - strand at 4481.424 kb on + strand at 4481.424 kb on + strand at 4481.425 kb on - strand at 4481.425 kb on - strand at 4481.425 kb on - strand at 4481.425 kb on - strand at 4481.438 kb on + strand at 4481.438 kb on + strand at 4481.438 kb on + strand at 4481.439 kb on - strand at 4481.439 kb on - strand at 4481.458 kb on + strand at 4481.459 kb on - strand at 4481.481 kb on + strand at 4481.482 kb on - strand at 4481.502 kb on + strand at 4481.503 kb on - strand at 4481.503 kb on - strand at 4481.503 kb on - strand at 4481.536 kb on + strand at 4481.536 kb on + strand at 4481.536 kb on + strand at 4481.536 kb on + strand at 4481.536 kb on + strand at 4481.536 kb on + strand at 4481.536 kb on + strand at 4481.537 kb on - strand at 4481.537 kb on - strand at 4481.537 kb on - strand at 4481.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 4,479,214 + QEN71_RS20115 0.49 -0.7 4,479,214 + QEN71_RS20115 0.49 -2.0 4,479,215 - QEN71_RS20115 0.49 -1.3 4,479,215 - QEN71_RS20115 0.49 +0.0 4,479,215 - QEN71_RS20115 0.49 +2.4 4,479,262 + QEN71_RS20115 0.52 -0.3 4,479,263 - QEN71_RS20115 0.52 -0.7 4,479,263 - QEN71_RS20115 0.52 +1.0 4,479,263 - QEN71_RS20115 0.52 -1.1 4,479,342 + QEN71_RS20115 0.58 +0.6 4,479,342 + QEN71_RS20115 0.58 -0.5 4,479,349 - QEN71_RS20115 0.59 +1.1 4,479,461 - QEN71_RS20115 0.67 -1.2 4,479,611 - QEN71_RS20115 0.78 -0.9 4,479,749 - QEN71_RS20115 0.89 -1.7 4,479,858 + -1.6 4,479,858 + +0.1 4,479,858 + -0.7 4,479,858 + -1.4 4,479,858 + -1.8 4,479,859 - -1.7 4,479,859 - -3.2 4,479,859 - -0.3 4,479,911 - +1.1 4,479,962 + -0.9 4,479,962 + -0.5 4,479,963 - +1.7 4,479,963 - +0.4 4,479,963 - +0.7 4,480,299 + QEN71_RS20120 0.48 -5.3 4,480,299 + QEN71_RS20120 0.48 -1.3 4,480,319 + QEN71_RS20120 0.51 -5.6 4,480,319 + QEN71_RS20120 0.51 -4.6 4,480,319 + QEN71_RS20120 0.51 -5.0 4,480,320 - QEN71_RS20120 0.51 -6.1 4,480,320 - QEN71_RS20120 0.51 -4.0 4,480,320 - QEN71_RS20120 0.51 -3.9 4,480,385 + QEN71_RS20120 0.62 -2.3 4,480,385 + QEN71_RS20120 0.62 -4.2 4,480,385 + QEN71_RS20120 0.62 -3.4 4,480,385 + QEN71_RS20120 0.62 -4.9 4,480,385 + QEN71_RS20120 0.62 +0.1 4,480,385 + QEN71_RS20120 0.62 -5.7 4,480,385 + QEN71_RS20120 0.62 -5.7 4,480,385 + QEN71_RS20120 0.62 -3.3 4,480,385 + QEN71_RS20120 0.62 -5.5 4,480,385 + QEN71_RS20120 0.62 -4.8 4,480,385 + QEN71_RS20120 0.62 -3.1 4,480,385 + QEN71_RS20120 0.62 -1.8 4,480,386 - QEN71_RS20120 0.62 -5.0 4,480,386 - QEN71_RS20120 0.62 -5.4 4,480,386 - QEN71_RS20120 0.62 +0.1 4,480,386 - QEN71_RS20120 0.62 -6.1 4,480,386 - QEN71_RS20120 0.62 -0.3 4,480,386 - QEN71_RS20120 0.62 -6.0 4,480,386 - QEN71_RS20120 0.62 -5.0 4,480,386 - QEN71_RS20120 0.62 -2.3 4,480,386 - QEN71_RS20120 0.62 -6.4 4,480,386 - QEN71_RS20120 0.62 -0.9 4,480,386 - QEN71_RS20120 0.62 -6.5 4,480,386 - QEN71_RS20120 0.62 -4.5 4,480,386 - QEN71_RS20120 0.62 -6.1 4,480,386 - QEN71_RS20120 0.62 -4.2 4,480,394 + QEN71_RS20120 0.63 -2.5 4,480,394 + QEN71_RS20120 0.63 -3.8 4,480,394 + QEN71_RS20120 0.63 -2.8 4,480,394 + QEN71_RS20120 0.63 -4.9 4,480,394 + QEN71_RS20120 0.63 -4.9 4,480,394 + QEN71_RS20120 0.63 -4.7 4,480,394 + QEN71_RS20120 0.63 -2.9 4,480,394 + QEN71_RS20120 0.63 -5.1 4,480,394 + QEN71_RS20120 0.63 -5.7 4,480,395 - QEN71_RS20120 0.63 -2.9 4,480,395 - QEN71_RS20120 0.63 -4.6 4,480,395 - QEN71_RS20120 0.63 -1.3 4,480,395 - QEN71_RS20120 0.63 -3.9 4,480,433 + QEN71_RS20120 0.69 -5.3 4,480,433 + QEN71_RS20120 0.69 -4.5 4,480,433 + QEN71_RS20120 0.69 -4.8 4,480,433 + QEN71_RS20120 0.69 -5.0 4,480,433 + QEN71_RS20120 0.69 -4.3 4,480,434 - QEN71_RS20120 0.70 -4.1 4,480,434 - QEN71_RS20120 0.70 -4.3 4,480,434 - QEN71_RS20120 0.70 -2.2 4,480,434 - QEN71_RS20120 0.70 -1.4 4,480,434 - QEN71_RS20120 0.70 -1.3 4,480,434 - QEN71_RS20120 0.70 -5.4 4,480,434 - QEN71_RS20120 0.70 -1.5 4,480,434 - QEN71_RS20120 0.70 -2.0 4,480,434 - QEN71_RS20120 0.70 -6.3 4,480,605 + -4.0 4,480,606 - -5.8 4,480,641 + -5.3 4,480,642 - -0.8 4,480,642 - +0.2 4,480,825 + QEN71_RS20125 0.58 -5.5 4,480,825 + QEN71_RS20125 0.58 -5.2 4,480,826 - QEN71_RS20125 0.58 -5.6 4,480,826 - QEN71_RS20125 0.58 -4.7 4,480,826 - QEN71_RS20125 0.58 -3.0 4,480,826 - QEN71_RS20125 0.58 -5.1 4,480,826 - QEN71_RS20125 0.58 -7.0 4,480,908 + QEN71_RS20125 0.83 -6.5 4,480,931 - -2.5 4,480,931 - -2.6 4,480,951 + -4.9 4,480,952 - -6.0 4,480,952 - -3.7 4,480,952 - -2.8 4,481,012 - -1.5 4,481,019 + -5.4 4,481,019 + -6.2 4,481,019 + -5.3 4,481,019 + -1.1 4,481,019 + -4.4 4,481,019 + -4.5 4,481,020 - -1.1 4,481,020 - -0.5 4,481,020 - -2.6 4,481,020 - -3.7 4,481,020 - -2.4 4,481,020 - -1.4 4,481,020 - +0.1 4,481,020 - -1.7 4,481,068 + -5.4 4,481,068 + -0.5 4,481,068 + -4.8 4,481,068 + -3.2 4,481,068 + -6.0 4,481,068 + -4.9 4,481,068 + -4.1 4,481,069 - -1.6 4,481,069 - -2.5 4,481,069 - -1.6 4,481,069 - -0.9 4,481,069 - -2.3 4,481,069 - -4.1 4,481,069 - -3.2 4,481,069 - -3.2 4,481,069 - -0.5 4,481,088 + -2.3 4,481,088 + -2.2 4,481,088 + -5.2 4,481,088 + -4.7 4,481,088 + -3.2 4,481,089 - -4.1 4,481,089 - -1.8 4,481,098 + -1.5 4,481,098 + -4.1 4,481,099 - -2.6 4,481,107 + -5.8 4,481,127 + -5.0 4,481,127 + -6.3 4,481,127 + -5.3 4,481,127 + -0.9 4,481,127 + -5.1 4,481,128 - -4.7 4,481,128 - -5.0 4,481,128 - -3.4 4,481,128 - -4.1 4,481,128 - -3.9 4,481,128 - -4.6 4,481,128 - +0.1 4,481,128 - -3.5 4,481,152 + -6.3 4,481,152 + -2.8 4,481,219 + +1.6 4,481,219 + +0.4 4,481,219 + +2.2 4,481,226 + +0.8 4,481,226 + +0.1 4,481,226 + -0.0 4,481,226 + -0.8 4,481,227 - +3.8 4,481,227 - +3.5 4,481,227 - +2.5 4,481,227 - +3.5 4,481,227 - +3.7 4,481,227 - +3.6 4,481,230 + +1.4 4,481,231 - +2.7 4,481,424 + -2.2 4,481,424 + -3.0 4,481,425 - +2.5 4,481,425 - +2.6 4,481,425 - +1.1 4,481,425 - +0.8 4,481,438 + -3.5 4,481,438 + -3.0 4,481,438 + -3.2 4,481,439 - +1.8 4,481,439 - +1.9 4,481,458 + -4.4 4,481,459 - +1.5 4,481,481 + -4.5 4,481,482 - +0.3 4,481,502 + -4.5 4,481,503 - +1.2 4,481,503 - +1.1 4,481,503 - +0.7 4,481,536 + -3.6 4,481,536 + -2.8 4,481,536 + -3.8 4,481,536 + -3.1 4,481,536 + -4.3 4,481,536 + -3.4 4,481,536 + -4.1 4,481,537 - +1.8 4,481,537 - +1.7 4,481,537 - +0.9 4,481,537 - +0.7
Or see this region's nucleotide sequence