Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19640 and QEN71_RS19645 are separated by 170 nucleotides QEN71_RS19645 and QEN71_RS19650 are separated by 66 nucleotides
QEN71_RS19640: QEN71_RS19640 - porin, at 4,374,999 to 4,376,045
_RS19640
QEN71_RS19645: QEN71_RS19645 - C4-dicarboxylate transporter DctA, at 4,376,216 to 4,377,571
_RS19645
QEN71_RS19650: QEN71_RS19650 - hypothetical protein, at 4,377,638 to 4,378,552
_RS19650
Position (kb)
4376
4377
4378 Strain fitness (log2 ratio)
-2
-1
0
1 at 4375.222 kb on + strand, within QEN71_RS19640 at 4375.363 kb on + strand, within QEN71_RS19640 at 4375.379 kb on - strand, within QEN71_RS19640 at 4375.444 kb on + strand, within QEN71_RS19640 at 4375.445 kb on - strand, within QEN71_RS19640 at 4375.850 kb on + strand, within QEN71_RS19640 at 4376.001 kb on + strand at 4376.100 kb on + strand at 4376.178 kb on + strand at 4376.381 kb on + strand, within QEN71_RS19645 at 4376.611 kb on - strand, within QEN71_RS19645 at 4376.640 kb on + strand, within QEN71_RS19645 at 4376.641 kb on - strand, within QEN71_RS19645 at 4376.768 kb on - strand, within QEN71_RS19645 at 4376.853 kb on + strand, within QEN71_RS19645 at 4377.178 kb on - strand, within QEN71_RS19645 at 4377.178 kb on - strand, within QEN71_RS19645 at 4377.298 kb on - strand, within QEN71_RS19645 at 4377.660 kb on - strand at 4377.847 kb on - strand, within QEN71_RS19650 at 4377.917 kb on + strand, within QEN71_RS19650 at 4377.917 kb on + strand, within QEN71_RS19650 at 4377.921 kb on + strand, within QEN71_RS19650 at 4377.922 kb on - strand, within QEN71_RS19650 at 4377.936 kb on + strand, within QEN71_RS19650 at 4378.158 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.276 kb on + strand, within QEN71_RS19650 at 4378.276 kb on + strand, within QEN71_RS19650 at 4378.277 kb on - strand, within QEN71_RS19650 at 4378.356 kb on + strand, within QEN71_RS19650 at 4378.356 kb on + strand, within QEN71_RS19650 at 4378.357 kb on - strand, within QEN71_RS19650 at 4378.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 4,375,222 + QEN71_RS19640 0.21 -2.6 4,375,363 + QEN71_RS19640 0.35 +0.1 4,375,379 - QEN71_RS19640 0.36 -0.3 4,375,444 + QEN71_RS19640 0.43 -0.1 4,375,445 - QEN71_RS19640 0.43 +0.0 4,375,850 + QEN71_RS19640 0.81 +0.6 4,376,001 + -1.0 4,376,100 + +0.3 4,376,178 + -0.6 4,376,381 + QEN71_RS19645 0.12 +0.7 4,376,611 - QEN71_RS19645 0.29 -0.1 4,376,640 + QEN71_RS19645 0.31 -0.3 4,376,641 - QEN71_RS19645 0.31 -0.5 4,376,768 - QEN71_RS19645 0.41 +0.9 4,376,853 + QEN71_RS19645 0.47 +0.1 4,377,178 - QEN71_RS19645 0.71 -0.8 4,377,178 - QEN71_RS19645 0.71 -0.5 4,377,298 - QEN71_RS19645 0.80 -0.5 4,377,660 - +1.6 4,377,847 - QEN71_RS19650 0.23 -0.9 4,377,917 + QEN71_RS19650 0.30 -0.7 4,377,917 + QEN71_RS19650 0.30 -0.6 4,377,921 + QEN71_RS19650 0.31 +0.0 4,377,922 - QEN71_RS19650 0.31 -1.3 4,377,936 + QEN71_RS19650 0.33 -0.9 4,378,158 + QEN71_RS19650 0.57 -0.7 4,378,272 + QEN71_RS19650 0.69 -0.5 4,378,272 + QEN71_RS19650 0.69 -2.5 4,378,272 + QEN71_RS19650 0.69 -0.8 4,378,273 - QEN71_RS19650 0.69 -1.8 4,378,273 - QEN71_RS19650 0.69 -0.3 4,378,273 - QEN71_RS19650 0.69 -0.9 4,378,276 + QEN71_RS19650 0.70 -0.4 4,378,276 + QEN71_RS19650 0.70 -0.7 4,378,277 - QEN71_RS19650 0.70 -1.1 4,378,356 + QEN71_RS19650 0.78 -0.0 4,378,356 + QEN71_RS19650 0.78 -0.8 4,378,357 - QEN71_RS19650 0.79 +0.6 4,378,555 - -2.4
Or see this region's nucleotide sequence