Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19645

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19640 and QEN71_RS19645 are separated by 170 nucleotidesQEN71_RS19645 and QEN71_RS19650 are separated by 66 nucleotides QEN71_RS19640: QEN71_RS19640 - porin, at 4,374,999 to 4,376,045 _RS19640 QEN71_RS19645: QEN71_RS19645 - C4-dicarboxylate transporter DctA, at 4,376,216 to 4,377,571 _RS19645 QEN71_RS19650: QEN71_RS19650 - hypothetical protein, at 4,377,638 to 4,378,552 _RS19650 Position (kb) 4376 4377 4378Strain fitness (log2 ratio) -2 -1 0 1at 4375.222 kb on + strand, within QEN71_RS19640at 4375.363 kb on + strand, within QEN71_RS19640at 4375.379 kb on - strand, within QEN71_RS19640at 4375.444 kb on + strand, within QEN71_RS19640at 4375.445 kb on - strand, within QEN71_RS19640at 4375.850 kb on + strand, within QEN71_RS19640at 4376.001 kb on + strandat 4376.100 kb on + strandat 4376.178 kb on + strandat 4376.381 kb on + strand, within QEN71_RS19645at 4376.611 kb on - strand, within QEN71_RS19645at 4376.640 kb on + strand, within QEN71_RS19645at 4376.641 kb on - strand, within QEN71_RS19645at 4376.768 kb on - strand, within QEN71_RS19645at 4376.853 kb on + strand, within QEN71_RS19645at 4377.178 kb on - strand, within QEN71_RS19645at 4377.178 kb on - strand, within QEN71_RS19645at 4377.298 kb on - strand, within QEN71_RS19645at 4377.660 kb on - strandat 4377.847 kb on - strand, within QEN71_RS19650at 4377.917 kb on + strand, within QEN71_RS19650at 4377.917 kb on + strand, within QEN71_RS19650at 4377.921 kb on + strand, within QEN71_RS19650at 4377.922 kb on - strand, within QEN71_RS19650at 4377.936 kb on + strand, within QEN71_RS19650at 4378.158 kb on + strand, within QEN71_RS19650at 4378.272 kb on + strand, within QEN71_RS19650at 4378.272 kb on + strand, within QEN71_RS19650at 4378.272 kb on + strand, within QEN71_RS19650at 4378.273 kb on - strand, within QEN71_RS19650at 4378.273 kb on - strand, within QEN71_RS19650at 4378.273 kb on - strand, within QEN71_RS19650at 4378.276 kb on + strand, within QEN71_RS19650at 4378.276 kb on + strand, within QEN71_RS19650at 4378.277 kb on - strand, within QEN71_RS19650at 4378.356 kb on + strand, within QEN71_RS19650at 4378.356 kb on + strand, within QEN71_RS19650at 4378.357 kb on - strand, within QEN71_RS19650at 4378.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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4,375,222 + QEN71_RS19640 0.21 -2.6
4,375,363 + QEN71_RS19640 0.35 +0.1
4,375,379 - QEN71_RS19640 0.36 -0.3
4,375,444 + QEN71_RS19640 0.43 -0.1
4,375,445 - QEN71_RS19640 0.43 +0.0
4,375,850 + QEN71_RS19640 0.81 +0.6
4,376,001 + -1.0
4,376,100 + +0.3
4,376,178 + -0.6
4,376,381 + QEN71_RS19645 0.12 +0.7
4,376,611 - QEN71_RS19645 0.29 -0.1
4,376,640 + QEN71_RS19645 0.31 -0.3
4,376,641 - QEN71_RS19645 0.31 -0.5
4,376,768 - QEN71_RS19645 0.41 +0.9
4,376,853 + QEN71_RS19645 0.47 +0.1
4,377,178 - QEN71_RS19645 0.71 -0.8
4,377,178 - QEN71_RS19645 0.71 -0.5
4,377,298 - QEN71_RS19645 0.80 -0.5
4,377,660 - +1.6
4,377,847 - QEN71_RS19650 0.23 -0.9
4,377,917 + QEN71_RS19650 0.30 -0.7
4,377,917 + QEN71_RS19650 0.30 -0.6
4,377,921 + QEN71_RS19650 0.31 +0.0
4,377,922 - QEN71_RS19650 0.31 -1.3
4,377,936 + QEN71_RS19650 0.33 -0.9
4,378,158 + QEN71_RS19650 0.57 -0.7
4,378,272 + QEN71_RS19650 0.69 -0.5
4,378,272 + QEN71_RS19650 0.69 -2.5
4,378,272 + QEN71_RS19650 0.69 -0.8
4,378,273 - QEN71_RS19650 0.69 -1.8
4,378,273 - QEN71_RS19650 0.69 -0.3
4,378,273 - QEN71_RS19650 0.69 -0.9
4,378,276 + QEN71_RS19650 0.70 -0.4
4,378,276 + QEN71_RS19650 0.70 -0.7
4,378,277 - QEN71_RS19650 0.70 -1.1
4,378,356 + QEN71_RS19650 0.78 -0.0
4,378,356 + QEN71_RS19650 0.78 -0.8
4,378,357 - QEN71_RS19650 0.79 +0.6
4,378,555 - -2.4

Or see this region's nucleotide sequence