Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS17425 and QEN71_RS17430 are separated by 12 nucleotides QEN71_RS17430 and QEN71_RS17435 are separated by 242 nucleotides QEN71_RS17435 and QEN71_RS17440 are separated by 19 nucleotides QEN71_RS17440 and QEN71_RS17445 are separated by 27 nucleotides
QEN71_RS17425: QEN71_RS17425 - hybrid sensor histidine kinase/response regulator, at 3,870,333 to 3,872,345
_RS17425
QEN71_RS17430: QEN71_RS17430 - response regulator transcription factor, at 3,872,358 to 3,872,933
_RS17430
QEN71_RS17435: QEN71_RS17435 - response regulator transcription factor, at 3,873,176 to 3,873,760
_RS17435
QEN71_RS17440: QEN71_RS17440 - Hpt domain-containing protein, at 3,873,780 to 3,874,079
_RS17440
QEN71_RS17445: QEN71_RS17445 - OmpA family protein, at 3,874,107 to 3,875,168
_RS17445
Position (kb) 3873
3874 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3872.246 kb on - strand at 3872.444 kb on - strand, within QEN71_RS17430 at 3872.444 kb on - strand, within QEN71_RS17430 at 3872.516 kb on - strand, within QEN71_RS17430 at 3873.082 kb on + strand at 3873.104 kb on + strand at 3873.647 kb on - strand, within QEN71_RS17435 at 3873.675 kb on - strand, within QEN71_RS17435 at 3873.850 kb on + strand, within QEN71_RS17440 at 3873.973 kb on + strand, within QEN71_RS17440 at 3874.313 kb on + strand, within QEN71_RS17445 at 3874.343 kb on - strand, within QEN71_RS17445 at 3874.343 kb on - strand, within QEN71_RS17445 at 3874.526 kb on + strand, within QEN71_RS17445 at 3874.725 kb on + strand, within QEN71_RS17445 at 3874.725 kb on + strand, within QEN71_RS17445 at 3874.726 kb on - strand, within QEN71_RS17445 at 3874.726 kb on - strand, within QEN71_RS17445 at 3874.727 kb on + strand, within QEN71_RS17445 at 3874.728 kb on - strand, within QEN71_RS17445
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 3,872,246 - +0.4 3,872,444 - QEN71_RS17430 0.15 -0.0 3,872,444 - QEN71_RS17430 0.15 +0.0 3,872,516 - QEN71_RS17430 0.27 +0.6 3,873,082 + -0.9 3,873,104 + -1.8 3,873,647 - QEN71_RS17435 0.81 -1.9 3,873,675 - QEN71_RS17435 0.85 -1.7 3,873,850 + QEN71_RS17440 0.23 +1.5 3,873,973 + QEN71_RS17440 0.64 -1.4 3,874,313 + QEN71_RS17445 0.19 -1.6 3,874,343 - QEN71_RS17445 0.22 +0.5 3,874,343 - QEN71_RS17445 0.22 +2.2 3,874,526 + QEN71_RS17445 0.39 -1.0 3,874,725 + QEN71_RS17445 0.58 -1.0 3,874,725 + QEN71_RS17445 0.58 -0.6 3,874,726 - QEN71_RS17445 0.58 -1.7 3,874,726 - QEN71_RS17445 0.58 -0.1 3,874,727 + QEN71_RS17445 0.58 -1.5 3,874,728 - QEN71_RS17445 0.58 -0.1
Or see this region's nucleotide sequence