Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS07395 and QEN71_RS07400 are separated by 242 nucleotides QEN71_RS07400 and QEN71_RS07405 are separated by 116 nucleotides QEN71_RS07405 and QEN71_RS07410 are separated by 14 nucleotides QEN71_RS07410 and QEN71_RS07415 are separated by 90 nucleotides
QEN71_RS07395: QEN71_RS07395 - glycosyltransferase family 2 protein, at 1,646,215 to 1,647,192
_RS07395
QEN71_RS07400: QEN71_RS07400 - hypothetical protein, at 1,647,435 to 1,647,623
_RS07400
QEN71_RS07405: QEN71_RS07405 - hypothetical protein, at 1,647,740 to 1,647,970
_RS07405
QEN71_RS07410: QEN71_RS07410 - hypothetical protein, at 1,647,985 to 1,648,461
_RS07410
QEN71_RS07415: QEN71_RS07415 - MFS transporter, at 1,648,552 to 1,649,871
_RS07415
Position (kb)
1647
1648
1649 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1647.003 kb on - strand, within QEN71_RS07395 at 1647.003 kb on - strand, within QEN71_RS07395 at 1647.010 kb on - strand, within QEN71_RS07395 at 1647.010 kb on - strand, within QEN71_RS07395 at 1647.082 kb on + strand, within QEN71_RS07395 at 1647.082 kb on + strand, within QEN71_RS07395 at 1647.083 kb on - strand, within QEN71_RS07395 at 1647.083 kb on - strand, within QEN71_RS07395 at 1647.083 kb on - strand, within QEN71_RS07395 at 1647.152 kb on + strand at 1647.152 kb on + strand at 1647.152 kb on + strand at 1647.152 kb on + strand at 1647.152 kb on + strand at 1647.152 kb on + strand at 1647.152 kb on + strand at 1647.153 kb on - strand at 1647.153 kb on - strand at 1647.153 kb on - strand at 1647.153 kb on - strand at 1647.153 kb on - strand at 1647.263 kb on + strand at 1647.263 kb on + strand at 1647.263 kb on + strand at 1647.263 kb on + strand at 1647.263 kb on + strand at 1647.264 kb on - strand at 1647.264 kb on - strand at 1647.302 kb on + strand at 1647.306 kb on + strand at 1647.306 kb on + strand at 1647.307 kb on - strand at 1647.395 kb on + strand at 1647.395 kb on + strand at 1647.396 kb on - strand at 1647.687 kb on + strand at 1647.687 kb on + strand at 1647.688 kb on - strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.707 kb on + strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.708 kb on - strand at 1647.809 kb on + strand, within QEN71_RS07405 at 1647.809 kb on + strand, within QEN71_RS07405 at 1647.810 kb on - strand, within QEN71_RS07405 at 1647.810 kb on - strand, within QEN71_RS07405 at 1647.810 kb on - strand, within QEN71_RS07405 at 1647.882 kb on + strand, within QEN71_RS07405 at 1647.883 kb on - strand, within QEN71_RS07405 at 1647.883 kb on - strand, within QEN71_RS07405 at 1647.917 kb on - strand, within QEN71_RS07405 at 1647.917 kb on - strand, within QEN71_RS07405 at 1647.917 kb on - strand, within QEN71_RS07405 at 1647.936 kb on - strand, within QEN71_RS07405 at 1647.986 kb on + strand at 1647.986 kb on + strand at 1647.987 kb on - strand at 1647.987 kb on - strand at 1648.076 kb on + strand, within QEN71_RS07410 at 1648.076 kb on + strand, within QEN71_RS07410 at 1648.076 kb on + strand, within QEN71_RS07410 at 1648.076 kb on + strand, within QEN71_RS07410 at 1648.076 kb on + strand, within QEN71_RS07410 at 1648.076 kb on + strand, within QEN71_RS07410 at 1648.076 kb on + strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.077 kb on - strand, within QEN71_RS07410 at 1648.079 kb on - strand, within QEN71_RS07410 at 1648.208 kb on + strand, within QEN71_RS07410 at 1648.208 kb on + strand, within QEN71_RS07410 at 1648.208 kb on + strand, within QEN71_RS07410 at 1648.208 kb on + strand, within QEN71_RS07410 at 1648.208 kb on + strand, within QEN71_RS07410 at 1648.209 kb on - strand, within QEN71_RS07410 at 1648.209 kb on - strand, within QEN71_RS07410 at 1648.248 kb on - strand, within QEN71_RS07410 at 1648.299 kb on + strand, within QEN71_RS07410 at 1648.380 kb on + strand, within QEN71_RS07410 at 1648.381 kb on - strand, within QEN71_RS07410 at 1648.381 kb on - strand, within QEN71_RS07410 at 1648.381 kb on - strand, within QEN71_RS07410 at 1648.381 kb on - strand, within QEN71_RS07410 at 1648.381 kb on - strand, within QEN71_RS07410 at 1648.381 kb on - strand, within QEN71_RS07410 at 1648.381 kb on - strand, within QEN71_RS07410 at 1648.554 kb on - strand at 1648.554 kb on - strand at 1648.593 kb on + strand at 1648.593 kb on + strand at 1648.593 kb on + strand at 1648.594 kb on - strand at 1649.276 kb on + strand, within QEN71_RS07415 at 1649.276 kb on + strand, within QEN71_RS07415 at 1649.277 kb on - strand, within QEN71_RS07415 at 1649.277 kb on - strand, within QEN71_RS07415 at 1649.277 kb on - strand, within QEN71_RS07415 at 1649.277 kb on - strand, within QEN71_RS07415 at 1649.277 kb on - strand, within QEN71_RS07415 at 1649.300 kb on + strand, within QEN71_RS07415 at 1649.301 kb on - strand, within QEN71_RS07415
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 1,647,003 - QEN71_RS07395 0.81 -0.1 1,647,003 - QEN71_RS07395 0.81 -1.1 1,647,010 - QEN71_RS07395 0.81 -0.4 1,647,010 - QEN71_RS07395 0.81 -0.8 1,647,082 + QEN71_RS07395 0.89 -0.3 1,647,082 + QEN71_RS07395 0.89 -0.3 1,647,083 - QEN71_RS07395 0.89 -0.2 1,647,083 - QEN71_RS07395 0.89 +0.0 1,647,083 - QEN71_RS07395 0.89 +0.3 1,647,152 + +0.2 1,647,152 + +1.5 1,647,152 + -0.2 1,647,152 + -2.2 1,647,152 + -0.3 1,647,152 + +0.6 1,647,152 + -0.2 1,647,153 - -1.1 1,647,153 - -0.1 1,647,153 - +1.0 1,647,153 - -0.2 1,647,153 - -0.3 1,647,263 + -0.9 1,647,263 + +0.5 1,647,263 + +0.7 1,647,263 + +0.9 1,647,263 + +0.3 1,647,264 - -0.7 1,647,264 - -0.4 1,647,302 + -0.3 1,647,306 + -1.6 1,647,306 + +0.8 1,647,307 - -0.5 1,647,395 + +0.5 1,647,395 + -0.0 1,647,396 - +1.5 1,647,687 + -0.1 1,647,687 + -3.1 1,647,688 - +0.1 1,647,707 + -1.5 1,647,707 + -0.8 1,647,707 + -0.4 1,647,707 + -0.1 1,647,707 + +1.0 1,647,707 + -0.3 1,647,707 + -0.1 1,647,707 + +1.4 1,647,707 + -0.3 1,647,708 - -0.2 1,647,708 - -0.5 1,647,708 - +0.0 1,647,708 - -0.9 1,647,708 - +0.7 1,647,708 - +1.7 1,647,708 - -0.1 1,647,708 - +0.8 1,647,708 - -2.3 1,647,809 + QEN71_RS07405 0.30 -1.4 1,647,809 + QEN71_RS07405 0.30 -0.3 1,647,810 - QEN71_RS07405 0.30 +1.6 1,647,810 - QEN71_RS07405 0.30 +0.2 1,647,810 - QEN71_RS07405 0.30 -1.8 1,647,882 + QEN71_RS07405 0.61 +0.5 1,647,883 - QEN71_RS07405 0.62 -0.1 1,647,883 - QEN71_RS07405 0.62 -0.8 1,647,917 - QEN71_RS07405 0.77 +0.5 1,647,917 - QEN71_RS07405 0.77 -0.1 1,647,917 - QEN71_RS07405 0.77 +0.2 1,647,936 - QEN71_RS07405 0.85 -1.4 1,647,986 + -0.5 1,647,986 + -1.7 1,647,987 - -1.0 1,647,987 - +1.3 1,648,076 + QEN71_RS07410 0.19 -0.6 1,648,076 + QEN71_RS07410 0.19 +3.0 1,648,076 + QEN71_RS07410 0.19 -2.8 1,648,076 + QEN71_RS07410 0.19 +0.5 1,648,076 + QEN71_RS07410 0.19 -0.3 1,648,076 + QEN71_RS07410 0.19 -0.3 1,648,076 + QEN71_RS07410 0.19 +0.8 1,648,077 - QEN71_RS07410 0.19 -0.5 1,648,077 - QEN71_RS07410 0.19 +0.3 1,648,077 - QEN71_RS07410 0.19 +0.0 1,648,077 - QEN71_RS07410 0.19 -0.2 1,648,077 - QEN71_RS07410 0.19 -1.4 1,648,077 - QEN71_RS07410 0.19 -0.1 1,648,077 - QEN71_RS07410 0.19 +0.2 1,648,077 - QEN71_RS07410 0.19 -1.4 1,648,077 - QEN71_RS07410 0.19 +1.6 1,648,077 - QEN71_RS07410 0.19 -0.0 1,648,079 - QEN71_RS07410 0.20 +0.4 1,648,208 + QEN71_RS07410 0.47 -0.8 1,648,208 + QEN71_RS07410 0.47 -0.2 1,648,208 + QEN71_RS07410 0.47 +0.6 1,648,208 + QEN71_RS07410 0.47 -0.2 1,648,208 + QEN71_RS07410 0.47 +0.1 1,648,209 - QEN71_RS07410 0.47 -0.4 1,648,209 - QEN71_RS07410 0.47 -0.3 1,648,248 - QEN71_RS07410 0.55 -0.3 1,648,299 + QEN71_RS07410 0.66 +1.2 1,648,380 + QEN71_RS07410 0.83 -0.8 1,648,381 - QEN71_RS07410 0.83 -0.4 1,648,381 - QEN71_RS07410 0.83 -0.2 1,648,381 - QEN71_RS07410 0.83 -0.4 1,648,381 - QEN71_RS07410 0.83 +0.9 1,648,381 - QEN71_RS07410 0.83 -2.1 1,648,381 - QEN71_RS07410 0.83 +0.3 1,648,381 - QEN71_RS07410 0.83 -0.8 1,648,554 - +0.8 1,648,554 - -1.5 1,648,593 + -0.5 1,648,593 + +0.5 1,648,593 + +0.9 1,648,594 - -2.6 1,649,276 + QEN71_RS07415 0.55 -1.4 1,649,276 + QEN71_RS07415 0.55 -0.8 1,649,277 - QEN71_RS07415 0.55 -2.9 1,649,277 - QEN71_RS07415 0.55 -0.3 1,649,277 - QEN71_RS07415 0.55 -0.8 1,649,277 - QEN71_RS07415 0.55 -1.0 1,649,277 - QEN71_RS07415 0.55 -0.4 1,649,300 + QEN71_RS07415 0.57 +0.3 1,649,301 - QEN71_RS07415 0.57 -0.9
Or see this region's nucleotide sequence