Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06465

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06460 and QEN71_RS06465 are separated by 86 nucleotidesQEN71_RS06465 and QEN71_RS06470 are separated by 92 nucleotides QEN71_RS06460: QEN71_RS06460 - outer membrane protein assembly factor BamA, at 1,435,066 to 1,437,378 _RS06460 QEN71_RS06465: QEN71_RS06465 - OmpH family outer membrane protein, at 1,437,465 to 1,437,956 _RS06465 QEN71_RS06470: QEN71_RS06470 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,438,049 to 1,439,125 _RS06470 Position (kb) 1437 1438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1437.405 kb on + strandat 1437.405 kb on + strandat 1437.430 kb on + strandat 1437.430 kb on + strandat 1437.437 kb on + strandat 1437.437 kb on + strandat 1437.437 kb on + strandat 1437.437 kb on + strandat 1437.864 kb on + strand, within QEN71_RS06465at 1437.864 kb on + strand, within QEN71_RS06465at 1437.864 kb on + strand, within QEN71_RS06465at 1437.891 kb on + strand, within QEN71_RS06465at 1437.891 kb on + strand, within QEN71_RS06465at 1438.018 kb on + strandat 1438.018 kb on + strandat 1438.022 kb on + strandat 1438.022 kb on + strandat 1438.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,437,405 + -1.4
1,437,405 + +0.5
1,437,430 + -2.0
1,437,430 + +1.9
1,437,437 + -1.6
1,437,437 + -2.6
1,437,437 + -2.1
1,437,437 + -2.8
1,437,864 + QEN71_RS06465 0.81 -2.4
1,437,864 + QEN71_RS06465 0.81 -2.0
1,437,864 + QEN71_RS06465 0.81 -4.2
1,437,891 + QEN71_RS06465 0.87 +0.9
1,437,891 + QEN71_RS06465 0.87 -0.4
1,438,018 + -0.8
1,438,018 + -1.0
1,438,022 + +0.2
1,438,022 + +1.2
1,438,022 + +0.9

Or see this region's nucleotide sequence